BLASTX nr result
ID: Cocculus22_contig00005660
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00005660
(882 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 54 1e-18
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 50 1e-18
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 45 4e-17
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 55 6e-17
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 51 1e-15
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 56 1e-15
gb|ABK28243.1| unknown [Arabidopsis thaliana] 56 1e-15
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 56 1e-15
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 52 1e-14
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 44 1e-14
ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232... 62 2e-14
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A... 51 4e-12
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 44 5e-12
ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcr... 47 3e-11
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A... 74 1e-10
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 52 2e-10
ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein A... 57 6e-10
ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232... 43 2e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 42 2e-09
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 44 3e-09
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 53.9 bits (128), Expect(3) = 1e-18
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLA-SSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTL 705
W+ + LK S+W+ + SW+W+K++K R I I NG W D W L
Sbjct: 154 WIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDL 213
Query: 704 GVLVRGYGENVRRRTGLKMRAKIVD 630
G L+ G+ G+ A +V+
Sbjct: 214 GRLIDSAGDRGAIDLGINKHATVVE 238
Score = 47.4 bits (111), Expect(3) = 1e-18
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*E---FSFKSAWNSIRKKNQFFKWIELVWFP 430
L ++ R+ ++ +RA+W+ + + FS K WN IR + W + VWF
Sbjct: 253 LNRVEERLILSWNSRNQAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFA 312
Query: 429 NHIPRHAFTLWKLSSGRLAIANKLS 355
IP+HAF +W RL+ ++++
Sbjct: 313 QAIPKHAFCMWLAVHNRLSTGDRMT 337
Score = 39.3 bits (90), Expect(3) = 1e-18
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALY 230
C C A ES +HLFFSC F+ +IW + +Y
Sbjct: 347 CILCNKALESRDHLFFSCPFATEIWEPLAKTIY 379
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 49.7 bits (117), Expect(4) = 1e-18
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLA-SSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTL 705
W+ LK+ S+W + SW+WKKL+K R + + + NG+ W D W +
Sbjct: 1129 WIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQRTSFWYDDWSCM 1188
Query: 704 GVLVRGYGENVRRRTGLKMRAKIV 633
G ++ G+ G+K R K+V
Sbjct: 1189 GRIMNFIGDKGIIDLGIK-RDKLV 1211
Score = 40.0 bits (92), Expect(4) = 1e-18
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*---EFSFKSAWNSIRKKNQFFKWIELVWFP 430
L +++N + + + K + VWR +FS + WN+IR W + VWF
Sbjct: 1228 LNQVENVIATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFY 1287
Query: 429 NHIPRHAFTLWKLSSGRLAIANKLSKFR 346
P+ +F +W + RL+ ++++ ++
Sbjct: 1288 QATPKFSFCVWLAALDRLSTGDRMANWK 1315
Score = 35.0 bits (79), Expect(4) = 1e-18
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C FC + +S +HLFF+C +S+++W
Sbjct: 1322 CVFCNHPTKSRDHLFFNCPYSSEVW 1346
Score = 35.0 bits (79), Expect(4) = 1e-18
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -2
Query: 164 NSKANIIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVK 24
N N +V+ AF A ++ +W ERN RR S +++G + ++V+
Sbjct: 1375 NRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLIGWIDKQVR 1421
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 45.4 bits (106), Expect(4) = 4e-17
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRIDEAKHNRA-VWRL---EAS*EFSFKSAWNSIRKKNQFFKWIEL 442
+P++ LQ + A + + H+ +W++ S FS W+ ++ + W +
Sbjct: 930 NPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKA 989
Query: 441 VWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 349
VWF +H+P+ AF W ++ RL ++L ++
Sbjct: 990 VWFKDHVPKQAFICWVVAHNRLHTRDRLRRW 1020
Score = 41.6 bits (96), Expect(4) = 4e-17
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -3
Query: 343 NVNP*CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYL 227
++ P C C + ES EHLFF C FS++IW +RAL L
Sbjct: 1023 SIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNL 1061
Score = 38.9 bits (89), Expect(4) = 4e-17
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 818 SWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAK 639
+W+W+KL K+RP I +G+G + W D W G L+ G GL + +
Sbjct: 852 NWIWRKLCKLRPFARPFIICEVGSGVTASFWHDNWTDHGPLLHLTGPAGPLLAGLPLNSV 911
Query: 638 IVD 630
+ D
Sbjct: 912 VRD 914
Score = 28.5 bits (62), Expect(4) = 4e-17
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 149 IIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKVEDCS 3
+I KL F A ++ +W ERN+R R I+ + V+ +++ S
Sbjct: 1085 LITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARLDPLS 1133
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 54.7 bits (130), Expect(3) = 6e-17
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLAS-SWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTL 705
WV L++ S+W ++ SW+WKKL+K R + + +GNGK W D W L
Sbjct: 905 WVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDL 964
Query: 704 GVLVRGYGENVRRRTGLKMRAKIVDLFS 621
G L+ G+ G+ R + + ++
Sbjct: 965 GQLLERTGDRGLIDLGISRRMTVEEAWT 992
Score = 41.6 bits (96), Expect(3) = 6e-17
Identities = 17/81 (20%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = -1
Query: 591 LQNRVKKAYRIDEAKHNRAVWRLEAS*---EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
+++ +KK++ ++ +WR ++ FS + W+ R + W +++WF +
Sbjct: 1007 IEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHAT 1066
Query: 420 PRHAFTLWKLSSGRLAIANKL 358
P+++F W + GRL +++
Sbjct: 1067 PKYSFCSWLAAHGRLPTGDRM 1087
Score = 38.1 bits (87), Expect(3) = 6e-17
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 346 NNVNP*CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALY 230
N + C FC+ E+ +HLFF+C F++ IW R ++
Sbjct: 1092 NGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIF 1130
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 50.8 bits (120), Expect(3) = 1e-15
Identities = 23/91 (25%), Positives = 42/91 (46%)
Frame = -2
Query: 875 HGTYLKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVL 696
H ++W G SW W+ L+++RP+ + IGNG + W D W G L
Sbjct: 173 HNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCSIGNGLTASFWADSWTPFGPL 232
Query: 695 VRGYGENVRRRTGLKMRAKIVDLFSLEAFIL 603
+ G + R + + +K+ D+ + ++L
Sbjct: 233 LTFIGSDGPRNQRIPLCSKVADVVNGNRWLL 263
Score = 43.1 bits (100), Expect(3) = 1e-15
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 534 VWRLEAS*EFSFKSA--WNSIRKKNQFFKWIELVWFPNHIPRHAFTLWKLSSGRL 376
+W++E + F SA WN++R K W+ VWF P++AF +W RL
Sbjct: 294 LWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWFKGVTPKNAFNMWITHQDRL 348
Score = 35.8 bits (81), Expect(3) = 1e-15
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 340 VNP*CSFCRNAFESCEHLFFSCHFSNKIW 254
V+P C+ C+ FE+ +HL SC FS +W
Sbjct: 361 VSPVCALCQVGFETRDHLMLSCDFSVSVW 389
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 56.2 bits (134), Expect(4) = 1e-15
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRIDEAKHNRA-VWRLEA---S*EFSFKSAWNSIRKKNQFFKWIEL 442
+PI+++L+N + +A + + +H+ + +W+ + S FS W+++ ++ W +
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 441 VWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 349
VWF NH+P+HAF W ++ RL ++L +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 33.9 bits (76), Expect(4) = 1e-15
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -2
Query: 188 WILKQCKINSKANIIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKVED 9
W+L + +I++LAF +C++ +W ERN R +RS I+ + ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 8 CS 3
S
Sbjct: 275 LS 276
Score = 30.0 bits (66), Expect(4) = 1e-15
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
Score = 28.9 bits (63), Expect(4) = 1e-15
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 800 LVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAKIVD 630
+ K+R + I +G+G + W D W LG L+ G R GL + A + D
Sbjct: 1 MCKLRVVARPFIVCEVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRD 57
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 56.2 bits (134), Expect(4) = 1e-15
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRIDEAKHNRA-VWRLEA---S*EFSFKSAWNSIRKKNQFFKWIEL 442
+PI+++L+N + +A + + +H+ + +W+ + S FS W+++ ++ W +
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 441 VWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 349
VWF NH+P+HAF W ++ RL ++L +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 33.9 bits (76), Expect(4) = 1e-15
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -2
Query: 188 WILKQCKINSKANIIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKVED 9
W+L + +I++LAF +C++ +W ERN R +RS I+ + ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 8 CS 3
S
Sbjct: 275 LS 276
Score = 30.0 bits (66), Expect(4) = 1e-15
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
Score = 28.9 bits (63), Expect(4) = 1e-15
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 800 LVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAKIVD 630
+ K+R + I +G+G + W D W LG L+ G R GL + A + D
Sbjct: 1 MCKLRVVARPFIVCEVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRD 57
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 56.2 bits (134), Expect(4) = 1e-15
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRIDEAKHNRA-VWRLEA---S*EFSFKSAWNSIRKKNQFFKWIEL 442
+PI+++L+N + +A + + +H+ + +W+ + S FS W+++ ++ W +
Sbjct: 73 NPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKA 132
Query: 441 VWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 349
VWF NH+P+HAF W ++ RL ++L +
Sbjct: 133 VWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 33.9 bits (76), Expect(4) = 1e-15
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -2
Query: 188 WILKQCKINSKANIIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKVED 9
W+L + +I++LAF +C++ +W ERN R +RS I+ + ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 8 CS 3
S
Sbjct: 275 LS 276
Score = 30.0 bits (66), Expect(4) = 1e-15
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
Score = 28.9 bits (63), Expect(4) = 1e-15
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 800 LVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAKIVD 630
+ K+R + I +G+G + W D W LG L+ G R GL + A + D
Sbjct: 1 MCKLRVVARPFIVCEVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRD 57
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 52.0 bits (123), Expect(3) = 1e-14
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGL-ASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTL 705
WV LK E +W SW+WKK++K R + + +GNG+S W D W L
Sbjct: 458 WVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLL 517
Query: 704 GVLVRGYGENVRRRTGLKMRAKIVDLFS 621
G L+ G G+ + D ++
Sbjct: 518 GRLIDVAGIRGTIDMGISRTMSVADAWT 545
Score = 47.0 bits (110), Expect(3) = 1e-14
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -1
Query: 564 RIDEAKHNRAVWRLEAS*---EFSFKSAWNSIRKKNQFFKWIELVWFPNHIPRHAFTLWK 394
R + + R +W+ + +FS K+ WN +R + W + VWFP+ P+++F LW
Sbjct: 571 RTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWFPHATPKYSFCLWL 630
Query: 393 LSSGRLAIANKLSKF 349
+ RLA ++ K+
Sbjct: 631 AAHDRLATGARMIKW 645
Score = 27.3 bits (59), Expect(3) = 1e-14
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFF 281
C+FCR E+ +HLFF
Sbjct: 653 CTFCRQGIETRDHLFF 668
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 43.5 bits (101), Expect(4) = 1e-14
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = -2
Query: 866 YLKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRG 687
+L ++W+ + + SW+W++L K+R + + +G+G + W D W G L+
Sbjct: 34 FLGQRNFWTLNSTTSDSWIWRRLCKLREVARPFVVCDVGSGVTAKFWHDNWTGHGPLIDL 93
Query: 686 YGENVRRRTGLKMRA-KIVDLFSLEAFI 606
G + GL + A ++D ++FI
Sbjct: 94 VGPLGPQTVGLPIDAVGLIDCQHDDSFI 121
Score = 43.1 bits (100), Expect(4) = 1e-14
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 507 FSFKSAWNSIRKKNQFFKWIELVWFPNHIPRHAFTLWKLSSGRLAIANKL 358
FS ++ +N W + VWF NH+P+HAF W ++ RL ++L
Sbjct: 133 FSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRL 182
Score = 30.0 bits (66), Expect(4) = 1e-14
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C C + ES HLFF C F +W
Sbjct: 193 CLLCNSHDESRAHLFFECPFCGAVW 217
Score = 28.9 bits (63), Expect(4) = 1e-14
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 188 WILKQCKINSKANIIVKLAFSACMHHVWWERNM 90
W+L + + +I++LAF A ++ +W ERN+
Sbjct: 238 WLLNPSR-DKNTTLIIRLAFQAYVYAIWRERNL 269
>ref|XP_004174134.1| PREDICTED: uncharacterized protein LOC101232257, partial [Cucumis
sativus]
Length = 297
Score = 62.4 bits (150), Expect(2) = 2e-14
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLG 702
WV LK S W AG+ SW ++++++ + I++A++ +GNG+ +WL PW G
Sbjct: 121 WVESYILKGRSLWEIDAGVGRSWCFREILRKQDILKAHVKMEVGNGRKYRVWLVPWIQGG 180
Query: 701 VLVRGYGENVRRRTGLKMRAKIVD 630
+++ +GE V + A +VD
Sbjct: 181 PIIQQFGERVIYDASSRWDASLVD 204
Score = 43.5 bits (101), Expect(2) = 2e-14
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
LM++ +R++ R + +R VW + FS SAW +IR + W L+W +I
Sbjct: 221 LMDIWDRIQ-GVRPSPSVEDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGRGNI 279
Query: 420 PRHAFTLWKLSSGRL 376
P+H F W RL
Sbjct: 280 PKHLFCAWLAIRDRL 294
>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 342
Score = 50.8 bits (120), Expect(3) = 4e-12
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
LM++ +RV+ R + +R VW + FS SAW +IR + W L+W +I
Sbjct: 151 LMDIWDRVQ-GVRPSPSVEDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNI 209
Query: 420 PRHAFTLWKLSSGRLAIANKLSKFRTM*ILNVLFAG 313
P+H+F W RL+ ++LS++ L+ L G
Sbjct: 210 PKHSFCAWLAIRDRLSTRDRLSRWDRSIPLSCLLCG 245
Score = 45.1 bits (105), Expect(3) = 4e-12
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -2
Query: 863 LKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGY 684
+KS S W SWV ++K R + E + +GNG+ +WL PW G +++ +
Sbjct: 64 VKSGSLWV-------SWVESYILKGRSLWEIDAGMEVGNGRKCRVWLVPWIQGGPIIQQF 116
Query: 683 GENVRRRTGLKMRAKIVD 630
GE V G + ++VD
Sbjct: 117 GERVIYDAGSRWDVRLVD 134
Score = 21.9 bits (45), Expect(3) = 4e-12
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFF 281
C C +ES HLFF
Sbjct: 241 CLLCGGNYESRNHLFF 256
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 43.9 bits (102), Expect(3) = 5e-12
Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRIDEAKHNRA-VWRLE---AS*EFSFKSAWNSIRKKNQFFKWIEL 442
+P+++ L++ + + + +H+ + +W++ S +FS W +++ + W +
Sbjct: 526 NPVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKA 585
Query: 441 VWFPNHIPRHAFTLWKLSSGRLAIANKL 358
VWF N +P+HAF W + RL ++L
Sbjct: 586 VWFTNQVPKHAFISWVTAWNRLHTRDRL 613
Score = 37.7 bits (86), Expect(3) = 5e-12
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 815 WVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAKI 636
WVW+KL K+R + + +G+G + W D W G L+ G + GL + + +
Sbjct: 449 WVWRKLCKLREVARPFVICEVGSGITARFWQDNWTGHGPLIHLTGLTGPQLVGLSITSVV 508
Query: 635 VD 630
D
Sbjct: 509 RD 510
Score = 35.8 bits (81), Expect(3) = 5e-12
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRAL 233
C C E+ +HLFF+C FS++IW +RA+
Sbjct: 624 CVLCNLVDETRDHLFFACRFSSRIWTFFMRAV 655
>ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|98962153|gb|ABF59406.1| unknown protein [Arabidopsis
thaliana] gi|332004916|gb|AED92299.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 209
Score = 47.0 bits (110), Expect(3) = 3e-11
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -2
Query: 824 ASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMR 645
+ SW+WK + K+RP+ + +G+G + W + W LG L+ G+ R +GL
Sbjct: 6 SGSWIWKSICKLRPMAREFVVCKVGSGITCNFWSENWTNLGPLIHLTGDLGPRVSGLPRN 65
Query: 644 AKIVD 630
A + D
Sbjct: 66 ASVAD 70
Score = 42.0 bits (97), Expect(3) = 3e-11
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = -1
Query: 609 HPILMELQNRVKKAYRID---EAKHNRAVWRL---EAS*EFSFKSAWNSIRKKNQFFKWI 448
+PI+ L+N + + ++ +A+ + +W++ EAS FS + W + + W
Sbjct: 86 NPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEKVDWH 145
Query: 447 ELVWFPNHIPRHAFTLWKLSSGRLAIANKL 358
+ +WF IP+HAF W RL +KL
Sbjct: 146 KAIWFKGRIPKHAFISWVNIRHRLPTRDKL 175
Score = 26.2 bits (56), Expect(3) = 3e-11
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKI 257
C C E+ +HLFF C F+ +I
Sbjct: 186 CLLCNAFDETRQHLFFDCVFAGEI 209
>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 265
Score = 73.6 bits (179), Expect = 1e-10
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLG 702
WV LK S W G+ SW ++ +++ R I+EA++N +GNGK +WLDPW G
Sbjct: 175 WVEAYILKGRSLWEIDVGVGRSWCFRAILRKREILEAHVNIEVGNGKKCRVWLDPWIQGG 234
Query: 701 VLVRGYGENVRRRTGLKMRAKIVD 630
+++ +GE+V G + A++VD
Sbjct: 235 PIIQQFGESVIYDAGSRWDARLVD 258
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 52.0 bits (123), Expect(2) = 2e-10
Identities = 30/96 (31%), Positives = 48/96 (50%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
LM++ +RV+ R+ + +R VW + FS SAW +IR + W L+W +I
Sbjct: 78 LMDIWDRVQ-GVRLSPSVEDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNI 136
Query: 420 PRHAFTLWKLSSGRLAIANKLSKFRTM*ILNVLFAG 313
P+H+F W RL +LS++ L+ L G
Sbjct: 137 PKHSFCAWLAIRDRLGTRGRLSRWDRSIPLSCLLCG 172
Score = 40.4 bits (93), Expect(2) = 2e-10
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYLKRREVYCGIK 197
C C +ES +HLFFSCHF +IW + L R Y G++
Sbjct: 168 CLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYWGVE 211
>ref|XP_004173049.1| PREDICTED: putative ribonuclease H protein At1g65750-like, partial
[Cucumis sativus]
Length = 647
Score = 57.0 bits (136), Expect(2) = 6e-10
Identities = 25/84 (29%), Positives = 46/84 (54%)
Frame = -2
Query: 881 WVHGTYLKSESYWSCTAGLASSWVWKKLVKIRPIMEANINFLIGNGKSLYLWLDPWPTLG 702
WV LK S W AG SW ++ +++ R I++A++ +GN + + LD W G
Sbjct: 357 WVEAYILKGRSLWEIDAGAGRSWCFRAILRKRDILKAHVEMKLGNVRKCRMLLDAWIQGG 416
Query: 701 VLVRGYGENVRRRTGLKMRAKIVD 630
++++ +GE V G + A+++D
Sbjct: 417 MIIQLFGERVIYDAGSRRDARLMD 440
Score = 33.9 bits (76), Expect(2) = 6e-10
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
LM++ + ++ R+ + +R VW FS SAW +IR + W L+W +I
Sbjct: 457 LMDIWDMIQ-GVRLSPSVDDRWVWVSGRLDSFSIVSAWETIRPNSSRVGWSGLLWGGGNI 515
Query: 420 P--RHAFTLWKLSSGRLAIANKLS 355
R F W RL ++LS
Sbjct: 516 TVGRVYFCAWLAIRDRLGTRDRLS 539
>ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232502 [Cucumis sativus]
Length = 191
Score = 42.7 bits (99), Expect(3) = 2e-09
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = -1
Query: 600 LMELQNRVKKAYRIDEAKHNRAVWRLEAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHI 421
LM++ +R++ + + +R VW + FS S W +IR + W L+W +I
Sbjct: 61 LMDIWDRIQGVWP-SLSVEDRWVWVPGSLDSFSIASVWETIRPHSSRVGWSGLLWGGGNI 119
Query: 420 PRHAFTLWKLSSGRLAIANKLSKFRTM*ILNVLFAG 313
P+H+F W L ++LS++ L+ + G
Sbjct: 120 PKHSFYAWLAIRDMLGTRDRLSRWDRSIPLSCMLCG 155
Score = 41.6 bits (96), Expect(3) = 2e-09
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 755 IGNGKSLYLWLDPWPTLGVLVRGYGENVRRRTGLKMRAKIVD 630
+GNGK +WLDPW G +++ +GE V G + A++VD
Sbjct: 3 VGNGKKCRVWLDPWIQGGAIIQQFGERVIYDAGSQRDARLVD 44
Score = 24.3 bits (51), Expect(3) = 2e-09
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFF 281
C C FES +HLFF
Sbjct: 151 CMLCGRNFESRDHLFF 166
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 42.0 bits (97), Expect(3) = 2e-09
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -1
Query: 555 EAKHNRAVWRL---EAS*EFSFKSAWNSIRKKNQFFKWIELVWFPNHIPRHAFTLWKLSS 385
EA + ++WR + + F K WN++R W + VWFP P+++F LW
Sbjct: 1317 EAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQ 1376
Query: 384 GRLAIANKLSKFRT 343
RL+ +++ + +
Sbjct: 1377 NRLSTGDRIKAWNS 1390
Score = 37.4 bits (85), Expect(3) = 2e-09
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C+ C NA E+ +HLFFSC +++ +W
Sbjct: 1396 CTLCNNAEETRDHLFFSCQYTSYVW 1420
Score = 28.9 bits (63), Expect(3) = 2e-09
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -2
Query: 146 IVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKV 15
+ + F A ++H+W ERN RR + +++ ++ + V+ ++
Sbjct: 1455 LFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRI 1498
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 44.3 bits (103), Expect(3) = 3e-09
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -1
Query: 507 FSFKSAWNSIRKKNQFFKWIELVWFPNHIPRHAFTLWKLSSGRLAIANKLS 355
FS K WN +RKK+ W + VWF + P++ F W LA+ N+LS
Sbjct: 444 FSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTW------LALRNRLS 488
Score = 37.4 bits (85), Expect(3) = 3e-09
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 328 CSFCRNAFESCEHLFFSCHFSNKIW 254
C+FC + E+ +HLFFSC +++ IW
Sbjct: 504 CTFCSTSIETRDHLFFSCSYASAIW 528
Score = 26.2 bits (56), Expect(3) = 3e-09
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = -2
Query: 152 NIIVKLAFSACMHHVWWERNMRRFQRKNRSILQIVGVVMEEVKTKV 15
+ + + F +H VW ERN RR + R+ ++ + ++++ ++
Sbjct: 561 SFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMDKQIRNQL 606