BLASTX nr result
ID: Cocculus22_contig00005598
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00005598
(942 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 328 2e-87
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 328 2e-87
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 328 2e-87
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 326 9e-87
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 321 2e-85
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 319 1e-84
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 318 3e-84
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 318 3e-84
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 316 1e-83
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 316 1e-83
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 316 1e-83
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 315 1e-83
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 315 2e-83
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 315 2e-83
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 313 5e-83
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 313 5e-83
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 313 6e-83
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 313 6e-83
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 312 1e-82
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 312 1e-82
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 328 bits (841), Expect = 2e-87
Identities = 158/264 (59%), Positives = 195/264 (73%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G K L FCEHCV K R KF AIH+T+GT DY+HS+ WGP +V+S+GG R+FV
Sbjct: 434 LLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFV 493
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
+ +DDYSR WVY MKHKSE F WK L+E QTGKKIKRLR+DNG E+ F + C
Sbjct: 494 SIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFC 553
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+DEGIAR+ TV +T QNGVAERMN+TLLE CML NAGL ++FW AV+ AC+LINR
Sbjct: 554 KDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRG 613
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
P I+ KTPME+WSGK A DY +L FGC+AY+HV + KL+PRAKKG+F+G GVKG+
Sbjct: 614 PHTGIQCKTPMEMWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGF 672
Query: 721 RIWCPEAKKTILSRDVTFNESDML 792
RIW P K+ I+SR+V F+ES +L
Sbjct: 673 RIWSPAEKRVIMSRNVVFDESPLL 696
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 328 bits (840), Expect = 2e-87
Identities = 160/286 (55%), Positives = 199/286 (69%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 663 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMM 722
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 723 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 782
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ C+L NAGL KQFW AV+ AC+LINR
Sbjct: 783 KSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRS 842
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 843 PSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 901
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK+S QVEH
Sbjct: 902 KLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEH 947
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 328 bits (840), Expect = 2e-87
Identities = 160/286 (55%), Positives = 199/286 (69%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 456 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMM 515
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 516 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 575
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ C+L NAGL KQFW AV+ AC+LINR
Sbjct: 576 KSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRS 635
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 636 PSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 694
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK+S QVEH
Sbjct: 695 KLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEH 740
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 326 bits (835), Expect = 9e-87
Identities = 160/286 (55%), Positives = 199/286 (69%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 417 LLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMM 476
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG ++ S F C
Sbjct: 477 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYC 536
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 537 KSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 596
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP++VWSG PA +Y L +FGC AY HV +SKL+PRA K +FLG SGVKGY
Sbjct: 597 PSYAIDKKTPIKVWSGSPA-NYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGY 655
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK+S QVEH
Sbjct: 656 KLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEH 701
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 321 bits (823), Expect = 2e-85
Identities = 159/286 (55%), Positives = 195/286 (68%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 365 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMM 424
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG E S F C
Sbjct: 425 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYC 484
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ CML NA L KQFW AV+ AC+LINR
Sbjct: 485 KSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRS 544
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+EVWSG PA +Y L +FGC+AY HV + KL+PR K +FLG SGVKGY
Sbjct: 545 PSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGY 603
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK S QVEH
Sbjct: 604 KLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEH 649
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 319 bits (817), Expect = 1e-84
Identities = 159/286 (55%), Positives = 195/286 (68%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 456 LLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMM 515
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 516 TIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 575
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNR ++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 576 KSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 635
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS A KTP+EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG S VKGY
Sbjct: 636 PSYA-NKKTPIEVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGY 693
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK+S QVEH
Sbjct: 694 KLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKASVQVEH 739
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 318 bits (814), Expect = 3e-84
Identities = 151/264 (57%), Positives = 188/264 (71%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 273 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMM 332
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T V+DYSR+VW Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 333 TIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 392
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 393 KSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 452
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
P AI+ KTP++VWSG PA +Y L +FGC+AY HV + KL+PR K +FLG SGVKGY
Sbjct: 453 PGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGY 511
Query: 721 RIWCPEAKKTILSRDVTFNESDML 792
++WCPE KK ++SR V F+ES ML
Sbjct: 512 KLWCPETKKVVISRYVVFHESVML 535
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 318 bits (814), Expect = 3e-84
Identities = 151/264 (57%), Positives = 188/264 (71%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 441 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMM 500
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T V+DYSR+VW Y +KHK + NVF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 501 TIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 560
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 561 KSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 620
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
P AI+ KTP++VWSG PA +Y L +FGC+AY HV + KL+PR K +FLG SGVKGY
Sbjct: 621 PGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGY 679
Query: 721 RIWCPEAKKTILSRDVTFNESDML 792
++WCPE KK ++SR V F+ES ML
Sbjct: 680 KLWCPETKKVVISRYVVFHESVML 703
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 316 bits (809), Expect = 1e-83
Identities = 146/263 (55%), Positives = 187/263 (71%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LLKG + K+ FCEHC+ K RV+F T++H T+GT DYVH+++WGP+K S+GG RY +
Sbjct: 448 LLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 507
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T +DDYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C
Sbjct: 508 TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R+ T+P T QNGVAERMNRT++ CML +A + K+FW A + AC+LINR
Sbjct: 568 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS + KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG SGVKGY
Sbjct: 628 PSIPLNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 721 RIWCPEAKKTILSRDVTFNESDM 789
++W PE KT +SR V FNES M
Sbjct: 687 KLWNPETGKTFMSRSVVFNESVM 709
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 316 bits (809), Expect = 1e-83
Identities = 158/286 (55%), Positives = 194/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHSN+WGPA+ S GG RY +
Sbjct: 491 LLDGQSIGKLKFCEHCIFGKHNRVKFNTSTHTTEGILDYVHSNLWGPARKTSFGGARYMM 550
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK +++ QT +K+K LR+DNG E S F C
Sbjct: 551 TTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERKVKILRTDNGMELCSKIFKSYC 610
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERM RT++ CML GL KQFW AV+ AC+LINR
Sbjct: 611 KCEGIVRHYTVPHTPQQNGVAERMKRTIISKSRCMLPYVGLPKQFWAEAVSTACYLINRS 670
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+EVWSG PA +Y L +FGC AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 671 PSYAIDKKTPIEVWSGSPA-NYSDLRVFGCIAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 729
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES ML EK+S QVEH
Sbjct: 730 KLWCPETKKVVISRNVVFHESVMLYDNPSTNVPVESQEKASVQVEH 775
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 316 bits (809), Expect = 1e-83
Identities = 146/263 (55%), Positives = 187/263 (71%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LLKG + K+ FCEHC+ K RV+F T++H T+GT DYVH+++WGP+K S+GG RY +
Sbjct: 448 LLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 507
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T +DDYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C
Sbjct: 508 TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R+ T+P T QNGVAERMNRT++ CML +A + K+FW A + AC+LINR
Sbjct: 568 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS + KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG SGVKGY
Sbjct: 628 PSIPLNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 721 RIWCPEAKKTILSRDVTFNESDM 789
++W PE KT +SR V FNES M
Sbjct: 687 KLWNPETGKTFMSRSVVFNESVM 709
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 315 bits (808), Expect = 1e-83
Identities = 146/263 (55%), Positives = 187/263 (71%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LLKG + K+ FCEHC+ K RV+F T++H T+GT DYVH+++WGP+K S+GG RY +
Sbjct: 448 LLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 507
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T +DDYSR+VW Y +KHK + F WK +IE QT +K+K LR+DNGGE+ S F C
Sbjct: 508 TVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYC 567
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R+ T+P T QNGVAERMNRT++ CML +A + K+FW A + AC+LINR
Sbjct: 568 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS + KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG SGVKGY
Sbjct: 628 PSIPLNKKTPIEVWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 721 RIWCPEAKKTILSRDVTFNESDM 789
++W PE KT +SR V FNES M
Sbjct: 687 KLWNPETGKTFMSRSVVFNESVM 709
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 315 bits (807), Expect = 2e-83
Identities = 155/286 (54%), Positives = 193/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
+L G KL FCEHC+ K RVKF T+ H T G DYVHS++WGP S GG RY +
Sbjct: 277 MLDGQSIGKLIFCEHCIFGKHHRVKFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMM 336
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T +DDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR DNG E+ S F C
Sbjct: 337 TIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYC 396
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TVP T QNGVAERMNRT++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 397 KSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 456
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+EVWS PA Y L +F C+AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 457 PSYAIDKKTPIEVWSSSPA-KYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 515
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK +++R+V F+ES ML EK+S QVEH
Sbjct: 516 KLWCPETKKVVINRNVVFHESVMLHDKPSTNVPVESQEKASVQVEH 561
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 315 bits (807), Expect = 2e-83
Identities = 155/286 (54%), Positives = 194/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA S GG RY +
Sbjct: 428 LLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMM 487
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + + F WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 488 TIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 547
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI ++T P T QN VAERMNRT++ CML NAGL KQFW AV+ AC+LINR
Sbjct: 548 KSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 607
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
P AI+ KTP+EVWSG P T+Y L +FGC+AY HV + KL+PRA K +FLG +SGVKGY
Sbjct: 608 PGYAIDKKTPIEVWSGSP-TNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGY 666
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES +L EK+S QVEH
Sbjct: 667 KLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEH 712
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 313 bits (803), Expect = 5e-83
Identities = 155/286 (54%), Positives = 192/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA S GG RY +
Sbjct: 491 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMM 550
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT KK+K LR+DNG E+ S F C
Sbjct: 551 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYC 610
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI ++TVP T QNGVAERMN ++ CML NA L KQFW AV+ C+LINR
Sbjct: 611 KSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRS 670
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS A + KTP+EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 671 PSYATDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 729
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES +L EK+S QVEH
Sbjct: 730 KLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEH 775
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 313 bits (803), Expect = 5e-83
Identities = 155/286 (54%), Positives = 192/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA S GG RY +
Sbjct: 491 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMM 550
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT KK+K LR+DNG E+ S F C
Sbjct: 551 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYC 610
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI ++TVP T QNGVAERMN ++ CML NA L KQFW AV+ C+LINR
Sbjct: 611 KSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRS 670
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS A + KTP+EVWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SGVKGY
Sbjct: 671 PSYATDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 729
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE KK ++SR+V F+ES +L EK+S QVEH
Sbjct: 730 KLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEH 775
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 313 bits (802), Expect = 6e-83
Identities = 152/275 (55%), Positives = 192/275 (69%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 288 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIM 347
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 348 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 407
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++T QNGVAERMNRT++ CML NAGL KQFW AV+ C+LINR
Sbjct: 408 KSEGIVRHYTPQ----QNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRS 463
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP++VWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SSGVKGY
Sbjct: 464 PSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGY 522
Query: 721 RIWCPEAKKTILSRDVTFNESDML*KTEKSSQQVE 825
++WCPE KK ++SR+V F+ES ML ++ VE
Sbjct: 523 KLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVE 557
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 313 bits (802), Expect = 6e-83
Identities = 152/275 (55%), Positives = 192/275 (69%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 288 LLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIM 347
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK + +VF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 348 TIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYC 407
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++T QNGVAERMNRT++ CML NAGL KQFW AV+ C+LINR
Sbjct: 408 KSEGIVRHYTPQ----QNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRS 463
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP++VWSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SSGVKGY
Sbjct: 464 PSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGY 522
Query: 721 RIWCPEAKKTILSRDVTFNESDML*KTEKSSQQVE 825
++WCPE KK ++SR+V F+ES ML ++ VE
Sbjct: 523 KLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVE 557
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 312 bits (799), Expect = 1e-82
Identities = 153/286 (53%), Positives = 194/286 (67%), Gaps = 10/286 (3%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LL G KL FCEHC+ K RVKF T+ H T G DYVHS++WGPA+ S GG RY +
Sbjct: 395 LLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMM 454
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T VDDYSR+VW Y +KHK E VF WK ++E QT +K+K LR+DNG E+ S F C
Sbjct: 455 TIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYC 514
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R++TV T QNGV ERMNRT++ CML NAGL ++FW A + AC+LINR
Sbjct: 515 RSEGIVRHYTVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRS 574
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS AI+ KTP+E+WSG PA +Y L +FGC+AY HV + KL+PRA K +FLG SGVK Y
Sbjct: 575 PSYAIDKKTPIEMWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKAY 633
Query: 721 RIWCPEAKKTILSRDVTFNESDML----------*KTEKSSQQVEH 828
++WCPE +K ++SR+V FNE+ ML +K+S QVEH
Sbjct: 634 KLWCPETQKVVISRNVIFNETVMLNDKSSTNVPVKSQQKASVQVEH 679
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 312 bits (799), Expect = 1e-82
Identities = 145/263 (55%), Positives = 186/263 (70%)
Frame = +1
Query: 1 LLKGAKTCKLGFCEHCVL*KKTRVKFGTAIHQTRGTFDYVHSNVWGPAKVDSVGGNRYFV 180
LLKG + K+ FCEHC+ K RV+F T++H T+GT DYVH+++WGP+K S+GG RY +
Sbjct: 450 LLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYML 509
Query: 181 TFVDDYSRRVWVYPMKHKSEVLNVFLYWKKLIETQTGKKIKRLRSDNGGEYTSDPFMKIC 360
T +DDYSR+VW Y +KHK + F WK +IE QT +K+K L +DNGGE+ S F C
Sbjct: 510 TIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYC 569
Query: 361 QDEGIARYFTVPDTH*QNGVAERMNRTLLENVHCMLFNAGLGKQFWTGAVTYACHLINRL 540
+ EGI R+ T+P T QNGVAERMNRT++ CML +A + K+FW A + AC+LINR
Sbjct: 570 RQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 629
Query: 541 PSAAIEGKTPMEVWSGKPATDYDSLHIFGCSAYFHVKDSKLDPRAKKGLFLGLSSGVKGY 720
PS + KTP+EVWSG PA DY L +FGC+AY HV + KL+PRA K LFLG SGVKGY
Sbjct: 630 PSIPLNKKTPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 688
Query: 721 RIWCPEAKKTILSRDVTFNESDM 789
++W PE KT +SR V FNES M
Sbjct: 689 KLWNPETGKTFMSRSVVFNESVM 711