BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00004768
         (2995 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1063   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1063   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   989   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   948   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   946   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   939   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   937   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   936   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   936   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   932   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   931   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   931   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   927   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   922   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   917   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   913   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   912   0.0  
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   909   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   903   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   899   0.0  

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1063 bits (2749), Expect = 0.0
 Identities = 566/1020 (55%), Positives = 716/1020 (70%), Gaps = 52/1020 (5%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G  IGK G+ VS +++EDE+Q LLPAIWKP PLW+GKQVIT++LNH+TR  G +PFT +K
Sbjct: 677  GSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITR--GRKPFTTEK 734

Query: 187  PSTIRKEYFGSQSREGK-------------------------FFIHKNYFVHGVIDKSQF 291
               I +EYFGS+  E K                           IHKN  V GVIDK+QF
Sbjct: 735  DGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQF 794

Query: 292  GKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE 471
             KYGL+H VQELYGS+ AG+LLS LSRLFTVFLQMHGFTCGVDDLLI  + D+ R    +
Sbjct: 795  DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELD 854

Query: 472  R--RVGEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEV 645
            +   +GE VH +F+G  +G ID + LQ E+EK++  NGE+A  RLD+MM +   +LT++V
Sbjct: 855  KSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKV 914

Query: 646  NDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMIS 825
            N  L        GL+KPFP+NC  LMT +GAKGS VNF QISS LGQQ+LEGKRVPRM+S
Sbjct: 915  NKDLLLK-----GLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVS 969

Query: 826  GKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1005
            GKTLPCFPPWD ++RAGGFISDR+LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRC
Sbjct: 970  GKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1029

Query: 1006 LVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSD 1185
            L+K+LECLKVCYD+TVRD+DGS+VQF YG+DGVDVH+TSF+++F+ LAVN++VV E    
Sbjct: 1030 LIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ 1089

Query: 1186 QSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXX 1365
              +       +GY+++LP+ L K+T+ FI    ++   F + +K +              
Sbjct: 1090 DGK------FNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSL 1143

Query: 1366 AEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPV 1545
            A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GEVNVTLGIPRLQEILM A+ +I+TP+
Sbjct: 1144 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEVNVTLGIPRLQEILMTAANDIKTPI 1202

Query: 1546 MTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSP 1725
            MTCPL+ G+++DDA+RLAAKL KV+VAD+ ESMEV +VPF+V  +Q C++YKLKMKLY P
Sbjct: 1203 MTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEP 1262

Query: 1726 ELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDD 1905
             LYP  + ISL+DCEETLE +FV ELE AI+ HL +LSKISGIKN L  + S   +ETD+
Sbjct: 1263 ALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDE 1322

Query: 1906 DLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMI 2085
            D        G                         QKR+ QA DEMDY D + E +    
Sbjct: 1323 DASGD----GLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD---- 1374

Query: 2086 GSENIEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDE-SRARSVSGAKLNEKHKSDH 2262
                 EGEPSAG   E+D V+ E +   +++V I D +DE S+  S S +  N+K K++ 
Sbjct: 1375 -----EGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEA 1429

Query: 2263 EGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNI 2442
            + KK + +  KK ++R + V+A+G  FEVH RFT+EP+ILL++IAQKAA  VYI+ +G I
Sbjct: 1430 KRKK-RFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKI 1488

Query: 2443 NQCSVV-----------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQIL 2553
            + C V+                       EK K   LQTAGV+F AFW+MQD+LDV  + 
Sbjct: 1489 DLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVY 1548

Query: 2554 SNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRH- 2730
            SN++HA+  T+GVEAARAT+IK+V  VF  +G+ VNIRHL+L+ADFMT  G YRPM+RH 
Sbjct: 1549 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1608

Query: 2731 GMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            G+A S SP SKM++ETA++FI+EAA HG  D LES SARICLGLPVKMGTGCFDLMQK+E
Sbjct: 1609 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1063 bits (2749), Expect = 0.0
 Identities = 566/1020 (55%), Positives = 716/1020 (70%), Gaps = 52/1020 (5%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G  IGK G+ VS +++EDE+Q LLPAIWKP PLW+GKQVIT++LNH+TR  G +PFT +K
Sbjct: 748  GSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITR--GRKPFTTEK 805

Query: 187  PSTIRKEYFGSQSREGK-------------------------FFIHKNYFVHGVIDKSQF 291
               I +EYFGS+  E K                           IHKN  V GVIDK+QF
Sbjct: 806  DGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQF 865

Query: 292  GKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE 471
             KYGL+H VQELYGS+ AG+LLS LSRLFTVFLQMHGFTCGVDDLLI  + D+ R    +
Sbjct: 866  DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELD 925

Query: 472  R--RVGEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEV 645
            +   +GE VH +F+G  +G ID + LQ E+EK++  NGE+A  RLD+MM +   +LT++V
Sbjct: 926  KSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKV 985

Query: 646  NDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMIS 825
            N  L        GL+KPFP+NC  LMT +GAKGS VNF QISS LGQQ+LEGKRVPRM+S
Sbjct: 986  NKDLLLK-----GLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVS 1040

Query: 826  GKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1005
            GKTLPCFPPWD ++RAGGFISDR+LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRC
Sbjct: 1041 GKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1100

Query: 1006 LVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSD 1185
            L+K+LECLKVCYD+TVRD+DGS+VQF YG+DGVDVH+TSF+++F+ LAVN++VV E    
Sbjct: 1101 LIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQ 1160

Query: 1186 QSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXX 1365
              +       +GY+++LP+ L K+T+ FI    ++   F + +K +              
Sbjct: 1161 DGK------FNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSL 1214

Query: 1366 AEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPV 1545
            A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GEVNVTLGIPRLQEILM A+ +I+TP+
Sbjct: 1215 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEVNVTLGIPRLQEILMTAANDIKTPI 1273

Query: 1546 MTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSP 1725
            MTCPL+ G+++DDA+RLAAKL KV+VAD+ ESMEV +VPF+V  +Q C++YKLKMKLY P
Sbjct: 1274 MTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEP 1333

Query: 1726 ELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDD 1905
             LYP  + ISL+DCEETLE +FV ELE AI+ HL +LSKISGIKN L  + S   +ETD+
Sbjct: 1334 ALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDE 1393

Query: 1906 DLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMI 2085
            D        G                         QKR+ QA DEMDY D + E +    
Sbjct: 1394 DASGD----GLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD---- 1445

Query: 2086 GSENIEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDE-SRARSVSGAKLNEKHKSDH 2262
                 EGEPSAG   E+D V+ E +   +++V I D +DE S+  S S +  N+K K++ 
Sbjct: 1446 -----EGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEA 1500

Query: 2263 EGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNI 2442
            + KK + +  KK ++R + V+A+G  FEVH RFT+EP+ILL++IAQKAA  VYI+ +G I
Sbjct: 1501 KRKK-RFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKI 1559

Query: 2443 NQCSVV-----------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQIL 2553
            + C V+                       EK K   LQTAGV+F AFW+MQD+LDV  + 
Sbjct: 1560 DLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVY 1619

Query: 2554 SNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRH- 2730
            SN++HA+  T+GVEAARAT+IK+V  VF  +G+ VNIRHL+L+ADFMT  G YRPM+RH 
Sbjct: 1620 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1679

Query: 2731 GMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            G+A S SP SKM++ETA++FI+EAA HG  D LES SARICLGLPVKMGTGCFDLMQK+E
Sbjct: 1680 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  989 bits (2556), Expect = 0.0
 Identities = 549/1026 (53%), Positives = 685/1026 (66%), Gaps = 62/1026 (6%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            G+ GQ V    +EDEIQ L PAIWKP PLWTGKQVIT+ILNH+T      PFTV+K + I
Sbjct: 682  GRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHP--PFTVEKDAKI 739

Query: 199  RKEYFGSQSREGK---------------------FFIHKNYFVHGVIDKSQFGKYGLIHT 315
               +F S++ E K                       ++KN  V GVIDK QFG+YGL+HT
Sbjct: 740  PSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHT 799

Query: 316  VQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQ 489
            V EL GSH AG+LLS LSRLFT +LQMHGFTCGVDDLLI+ + D ER K  E   + GE 
Sbjct: 800  VHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEA 859

Query: 490  VHAEFLGFKNGDI--DEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFP 663
            VH  F+G K+  I  D + +Q  IEK +R +G+SA A LD+ MS       NE+N K   
Sbjct: 860  VHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMS-------NELNTKTSS 912

Query: 664  ---SNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKT 834
               SN    GLLKP  +NC  LMT SGAKGS+VNFQQISS LGQQELEGKRVPRM+SGKT
Sbjct: 913  GVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKT 972

Query: 835  LPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK 1014
            LPCF PWD ++R+GG+I+DR+LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K
Sbjct: 973  LPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1032

Query: 1015 SLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSE 1194
            +LECLK+ YDHTVRDADGSVVQF YGEDGVDVH+TSF++KFK LA+NQ ++      +  
Sbjct: 1033 NLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIY-----KRS 1087

Query: 1195 NAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEP 1374
              Q    + Y+ ELPEAL+++   F++  S       +  K   +            A+P
Sbjct: 1088 GGQLGAFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQP 1147

Query: 1375 GEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTC 1554
            GEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM AS +I+TP+MTC
Sbjct: 1148 GEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASIDIKTPIMTC 1206

Query: 1555 PLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELY 1734
            PL+ G+T +DAD LA KL KV+VAD+VESMEV VVPF++     C +YKLKMKLY P  Y
Sbjct: 1207 PLQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHY 1266

Query: 1735 PRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLG 1914
            P++++IS++D EETLE++F+ ELE AI+ H+ +LS+ISGIK+ L  + S    E D+D+ 
Sbjct: 1267 PQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVA 1326

Query: 1915 SKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSE 2094
                                            QKR+ QA DEMDY DD  E E++    E
Sbjct: 1327 GDMSH----REERDDDNDDDDGERADDLGLDAQKRKLQATDEMDY-DDGFEEELN--EGE 1379

Query: 2095 NIEGEPSAGSESEVDQVDTETD--NDV---DDKVQIFDAEDESRARSVSGAKLNEKHKSD 2259
            +   E  +G ESE+DQ D ET+  NDV   ++  +       S+ +S   A  +  H   
Sbjct: 1380 STASEEESGFESEIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEK 1439

Query: 2260 HEGKKTKPK-----RAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYI 2424
             + KK KPK     R  K ++R +FVEA  + FEVH +FT+EP+ILL+EIAQK AK VYI
Sbjct: 1440 SKDKKKKPKAKRKSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYI 1499

Query: 2425 KRAGNINQCSVVE-----------------------KDKECELQTAGVNFQAFWEMQDDL 2535
            +  G I QC V +                       K+K   L   GV+F  FW+MQD L
Sbjct: 1500 QNPGKIEQCRVTDCKESQVIYYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHL 1559

Query: 2536 DVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYR 2715
            DV  I SN+IHA+ +TYGVEAAR T+I+++N VF+ +GI+V+ RHL+L+ADFMT  G YR
Sbjct: 1560 DVRYIYSNNIHAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYR 1619

Query: 2716 PMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFD 2892
            PMSR  G+A S SP SKMS+ETA++FI+EAA HGE+D LE+PSARICLGLPVKMGTG FD
Sbjct: 1620 PMSRMGGIAESISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFD 1679

Query: 2893 LMQKVE 2910
            LMQK+E
Sbjct: 1680 LMQKLE 1685


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  948 bits (2450), Expect = 0.0
 Identities = 528/1015 (52%), Positives = 667/1015 (65%), Gaps = 47/1015 (4%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G   GK GQ V   N+E E+    PAIWKP PLWTGKQVI+++L ++TR  G  PFT +K
Sbjct: 667  GSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITR--GSPPFTAEK 724

Query: 187  PSTIRKEYFGSQSREGKFF-----------------IHKNYFVHGVIDKSQFGKYGLIHT 315
             + I   +F +Q R+GK +                 I+KN  V GV+DK+QFG YG+IHT
Sbjct: 725  NAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHT 784

Query: 316  VQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQ 489
            VQELYGS+ AG LLS LSRLFT FLQMHGFTCGVDDL++ +  D+ER    +    +G+ 
Sbjct: 785  VQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDS 844

Query: 490  VHAEFLGFKNGD-IDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPS 666
            VH EF+G KN D ID +TLQ  IEK +R NGE+A     KM S+ N++ ++ +  KL   
Sbjct: 845  VHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALTLDRKMTSNLNSRTSSGILKKLLSE 904

Query: 667  NSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCF 846
                 G+LKP  +NC  LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF
Sbjct: 905  -----GILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCF 959

Query: 847  PPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 1026
            PPWD S RAGGFI DR+LT L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LEC
Sbjct: 960  PPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLEC 1019

Query: 1027 LKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQF 1206
            LKVCYDHTVRDADGS++QF YGEDGVDVH+TSF+++F  L+ N+++V      Q +    
Sbjct: 1020 LKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLD---- 1075

Query: 1207 INSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPV 1386
              S  Y+ +LPEALE +      K SK+ +    S +                A+PGEPV
Sbjct: 1076 -RSSPYINKLPEALEGKA----EKFSKQRN--LGSMEQADFLRLMEHKYVSCLAQPGEPV 1128

Query: 1387 GVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRR 1566
            GV+A+QS+GEP+TQMTLNTFH AG+ GE+NVTLGIPRLQEILM A+ +I+TP MTCPLR 
Sbjct: 1129 GVLASQSVGEPATQMTLNTFHLAGR-GEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRH 1187

Query: 1567 GKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFS 1746
             K+  DA  LA KL K++VAD+++SM+V VVP +V   Q C++YKL MKLY  + YP ++
Sbjct: 1188 DKSMKDAICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYT 1247

Query: 1747 DISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNIL---QRNESGDGEETDDDLGS 1917
            DI+L D EETL + FV ELE AI+ H+T+LSKISGIK      Q N S   E+   +   
Sbjct: 1248 DITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSE 1307

Query: 1918 KRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSEN 2097
              K+                           QKR+ Q  DE+DYED   E       SE 
Sbjct: 1308 SEKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEE 1367

Query: 2098 IEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKT 2277
            IEG+      S+VD    E  N+V D       E  S+++++     +EK     E KK+
Sbjct: 1368 IEGDEDG---SDVDA--NENYNNVTDANNSEGLEKPSKSKTI-----DEKQNLKREKKKS 1417

Query: 2278 KPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSV 2457
            +P    K ++R +FVEA+G  FE+H RFT EP+ILL++IAQ+ AK V I+  G + +C  
Sbjct: 1418 EP--TTKKYDRAIFVEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKA 1475

Query: 2458 V-----------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIH 2568
            +                       EK++   LQT+GV+F+ FWE++DDLDV  I SN++H
Sbjct: 1476 ITCKESGVIYYGKDGRKRIEISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVH 1535

Query: 2569 AIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVS 2745
            A+   YGVEAAR T+I++V  VF+ +GISVNIRHLTL+ADFMT  G YRPM+R G +A S
Sbjct: 1536 AMLNAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADS 1595

Query: 2746 TSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            TSP  KM +ETA  FI+EAAYHG+VD LE+PSARICLGLPVKMGTGC DL+QK+E
Sbjct: 1596 TSPFIKMCFETAGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLE 1650


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  946 bits (2445), Expect = 0.0
 Identities = 516/1016 (50%), Positives = 680/1016 (66%), Gaps = 52/1016 (5%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            G     VS ++ E  +Q +LPA+WKP PLWTGKQVIT++LNH+T+  G  P TVK    I
Sbjct: 689  GNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTK--GCAPCTVKNKGKI 746

Query: 199  RKEYFGSQSR---------------EGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYG 333
               YF S+SR               E +F I KN  V GVIDK+QFGK+GL+HT+QELYG
Sbjct: 747  PYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYG 806

Query: 334  SHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFERR-VGEQVHAEFLG 510
            S+ AG+LLS LSRLFT+FLQ+HGFTCGVDDL+I+   D+ R +  E   VGE+ H +F+ 
Sbjct: 807  SNKAGILLSALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVK 866

Query: 511  FKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLL 690
            FK G+I  + LQ EIEK M  N E+ATA LD  M ++ A   ++ N +L        GLL
Sbjct: 867  FKRGEIGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLK-----GLL 921

Query: 691  KPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSR 870
            KPFPRNC  LMT +GAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFPPWD +SR
Sbjct: 922  KPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASR 981

Query: 871  AGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHT 1050
            AGG++SDR+L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+T
Sbjct: 982  AGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYT 1041

Query: 1051 VRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMK 1230
            VRDADGS++QF YGEDGVDVH+TSFL  FK L  NQ+ + + L     + + +NS  Y++
Sbjct: 1042 VRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKL----RHGRKLNS--YIE 1095

Query: 1231 ELPEALEKRTRDF-----------INKLSKKHHSFRHSRKPRG-IXXXXXXXXXXXXAEP 1374
            +LP+ LE++ + F           + KL KK    +  ++                 A+ 
Sbjct: 1096 KLPDGLEEKVKHFWEKRTKKLEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADS 1155

Query: 1375 GEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTC 1554
            GEPVGV+A QS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM ASE I+TP++TC
Sbjct: 1156 GEPVGVLAGQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASEAIKTPILTC 1214

Query: 1555 PLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELY 1734
            P    ++++DA  L AK+ K++VAD++ESMEV ++P S++ +Q   LYKL +KL   +  
Sbjct: 1215 PFLGWQSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF- 1273

Query: 1735 PRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLG 1914
                 +S +DCE TL+ +F+ ELE AI +HL +LSKI+GI+N    +ES D +ET+++  
Sbjct: 1274 -----VSSEDCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENAS 1328

Query: 1915 SKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSE 2094
            S R +                           QKR+ Q  DEMDY+DD+ E+E     + 
Sbjct: 1329 STRHE-------EEMLDDEDEDERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAET--TA 1379

Query: 2095 NIEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAED-ESRARSVSGAKLNEKHKSDHEGK 2271
             IE E S  ++ E+D  D E   +  ++ Q+   +  E    +   +K   K K+  +  
Sbjct: 1380 EIEDEKSEQTD-EIDNGDEEEIGNRGNEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQN 1438

Query: 2272 KTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQC 2451
            K K +R+KK  +R VFV+ EGL FEVH RF +EP+ILL+++AQK AK VYIK +G I+QC
Sbjct: 1439 KKKERRSKKDSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQC 1498

Query: 2452 SVVE-------------------KDKEC---ELQTAGVNFQAFWEMQDDLDVNQILSNDI 2565
             +V+                   +D +     L+ AGV+F  FWEMQDDLDV +I +N+I
Sbjct: 1499 RMVKYEVTENTVMWDEYQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNI 1558

Query: 2566 HAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAV 2742
             A+  TYGVEAARA+++++V  VF  +G+ ++ RHL+L+ADFMT  G Y+PMSRHG ++ 
Sbjct: 1559 RAMLNTYGVEAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISE 1618

Query: 2743 STSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            S SP  KMS+ETA++FI+EAA HG  D LE+PS+RICLGLPVKMGTGCFD+MQK++
Sbjct: 1619 SLSPFLKMSFETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLD 1674


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  939 bits (2428), Expect = 0.0
 Identities = 512/1010 (50%), Positives = 674/1010 (66%), Gaps = 46/1010 (4%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            G     VS ++ E  +Q +LPA+WKP PLWTGKQVIT++LNH+T   G  P TVK    I
Sbjct: 689  GNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTN--GCPPCTVKNKGKI 746

Query: 199  RKEYFGSQSR---------------EGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYG 333
               YF S+SR               E +F I KN  V GVIDK+QFGK+GL+HT+QELYG
Sbjct: 747  PYAYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYG 806

Query: 334  SHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFERR-VGEQVHAEFLG 510
            S+ AG+LLS LSRLFT+FLQ+HGFTCG+DDL+I+   D+ R +  E   VGE+ H +F+ 
Sbjct: 807  SNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVK 866

Query: 511  FKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLL 690
            FK G+I  + LQ EIEK +  N E ATA LD  M ++ A   ++ N +L        GLL
Sbjct: 867  FKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLK-----GLL 921

Query: 691  KPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSR 870
            KPFPRNC  LMT +GAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFP WD +SR
Sbjct: 922  KPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASR 981

Query: 871  AGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHT 1050
            AGG++SDR+L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+T
Sbjct: 982  AGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYT 1041

Query: 1051 VRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINS--DGY 1224
            VRDADGS++QF YGEDGVDVH+TSFL  FK L  NQ+ + + L    +   +I    DG 
Sbjct: 1042 VRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGL 1101

Query: 1225 MKELPEALEKRTRDFINKLS---KKHHSFRHSRKPRG-IXXXXXXXXXXXXAEPGEPVGV 1392
             +++    E +T+    KL    KK    +  ++                 A+ GEPVGV
Sbjct: 1102 GEKVKHFWESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGV 1161

Query: 1393 IAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGK 1572
            +A QS+GEPSTQMTLNTFH AG+G E+NVTLGIPRLQEILM ASE I+TP+MTCP    K
Sbjct: 1162 LAGQSVGEPSTQMTLNTFHLAGRG-EMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWK 1220

Query: 1573 TRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDI 1752
            +++DA  L AK+ K++VAD++ESMEV ++P S++ +Q   LYKL +KL   +       +
Sbjct: 1221 SKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF------V 1274

Query: 1753 SLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQA 1932
            S +DCE TL+ +F+ ELE AI +HL +LSKI+GI+N    +ES D +ET+++  S R++ 
Sbjct: 1275 SSEDCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREE 1334

Query: 1933 GXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEP 2112
                                      QKR+ Q  DEMDY+DD+ E E     +  IE E 
Sbjct: 1335 -----EMLDDDDDDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEK 1389

Query: 2113 SAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSGAKLNE-KHKSDHEGKKTKPKR 2289
            S  ++ E+D  D E + D  ++     ++ +S    +S  K ++ K K+  + KK K +R
Sbjct: 1390 SEQTD-EIDNGDEEENGDRGNEEHT--SKLQSTEEDISNTKTSKSKTKTTVKQKKKKERR 1446

Query: 2290 AKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE-- 2463
            +KK  +R VFV+ EGL FEVH RF +EP+ILL+++AQK AK VY+K +G I+QC +V+  
Sbjct: 1447 SKKDSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYE 1506

Query: 2464 -----------------KDKECE---LQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQT 2583
                             +D +     L+ AGV+F  FWEMQDDLDV +I +N+I A+  T
Sbjct: 1507 VTENTVMWDENQTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNT 1566

Query: 2584 YGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLS 2760
            YGVEAARA+++++V  VF  +G+ ++ RHL+L+ADFMT  G Y+PMSRHG ++ S SP  
Sbjct: 1567 YGVEAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFL 1626

Query: 2761 KMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            KMS+ETA++FI+EAA HG  D LE+PS+RICLGLPVKMGTGCFD+MQ+++
Sbjct: 1627 KMSFETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELD 1676


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  937 bits (2422), Expect = 0.0
 Identities = 525/1015 (51%), Positives = 681/1015 (67%), Gaps = 52/1015 (5%)
 Frame = +1

Query: 22   KFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIR 201
            K GQ + +++ + E+  +LPA+WKP PLWTGKQV+T++L+H+T+  G  PF V+K   I 
Sbjct: 662  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQ--GSPPFFVEKDVKIP 719

Query: 202  KEYF-----GSQSREGK-----------------FFIHKNYFVHGVIDKSQFGKYGLIHT 315
            + +F     G+ S + K                   I KN  V GVIDK+QFG YGL+HT
Sbjct: 720  RGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHT 779

Query: 316  VQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQ 489
            VQELYGS+ AG+LLS +SRLFTVFLQ HGFTCGVDDLL+++ +D ER K  +   ++GEQ
Sbjct: 780  VQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQ 839

Query: 490  VHAEFLGFKNGD-IDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPS 666
            VH  FL  K+G+ +D MTLQ  IEK +  NGE+A   LD+ M+S+  + T   N K+   
Sbjct: 840  VHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTG--NSKVLKD 897

Query: 667  NSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCF 846
              S  GLLKP  +NC  LMT SGAKG   NFQQISS LGQQ+LEGKRVPRM+SGKTLPCF
Sbjct: 898  LLSE-GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCF 956

Query: 847  PPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLEC 1026
            PPWD +SRAGGFI DR+LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE 
Sbjct: 957  PPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLES 1016

Query: 1027 LKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQF 1206
            LK+CYDHTVRDADGSV+QF YGEDGVDVHKT+F++KF+ LA NQ ++ E     + + Q 
Sbjct: 1017 LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYE-----NSHHQL 1071

Query: 1207 INSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPV 1386
               + ++ ELP AL ++     N LSK        ++                A+PGEPV
Sbjct: 1072 GKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED--FIRLLENKYLSSLAQPGEPV 1129

Query: 1387 GVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRR 1566
            GV+AAQSIGEPSTQMTLNTFHH G+G E+NVTLGI RLQEILM AS++I+TP+MTCPL+ 
Sbjct: 1130 GVLAAQSIGEPSTQMTLNTFHHVGRG-EMNVTLGILRLQEILMTASQDIKTPIMTCPLKE 1188

Query: 1567 GKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFS 1746
            G + D A  LA KL K++VAD++ESM V VVPFS  K + C++YKL++  Y  E   +  
Sbjct: 1189 GYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHG 1248

Query: 1747 DISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRK 1926
             IS +D E TLE +F++ELE  I   + +LSKI+GIKN +  ++S    E D+   S++K
Sbjct: 1249 HISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQK 1308

Query: 1927 QAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEG 2106
            +                           +K++ QA DEMDYEDD  E++++         
Sbjct: 1309 E------NDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDS-EDDLN-------AK 1354

Query: 2107 EPSAGSESEVDQVDTE--TDNDVDDKVQIFDAEDESRARSVSGAKLNEK-HKSDHEGKKT 2277
            E S G ESEVDQ D    T+ND+ + V+   +E++     VS +   EK  ++  E KK 
Sbjct: 1355 ESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKV 1414

Query: 2278 KPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSV 2457
            K +  +K  +R++FVEA+   FEVH +FT+EP+ LLS+I Q+AA+ V I+R+G I QC  
Sbjct: 1415 KSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQ 1474

Query: 2458 V-----------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIH 2568
            +                       EK+K   LQT+GV+F+  WEMQD+LDV  I SNDIH
Sbjct: 1475 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1534

Query: 2569 AIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVS 2745
            A+ QTYGVEAARAT+I+++  +F  +GISVNIRHL+LVAD+MT  G YRPMSR  G++ S
Sbjct: 1535 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1594

Query: 2746 TSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
             SP S+M++ETA +FI++AA HGEVD LE+PS+RICLGLPVKMGTG FDLMQK+E
Sbjct: 1595 ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  936 bits (2420), Expect = 0.0
 Identities = 523/1016 (51%), Positives = 668/1016 (65%), Gaps = 48/1016 (4%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G   GK GQ V   N+E E+    PAIWKP PLWTGKQVI+++L ++TR     PFTV+K
Sbjct: 655  GSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITR--DSPPFTVEK 712

Query: 187  PSTIRKEYFGSQSREGK------------------FFIHKNYFVHGVIDKSQFGKYGLIH 312
             + I   +F +Q R+GK                    I+KN  V GV+DK+QFG YG+IH
Sbjct: 713  NAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIH 772

Query: 313  TVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGE 486
            TVQELYGS  AG LLS LSRLFT FLQMHGFTCGVDDL+I +  D+ER         +G+
Sbjct: 773  TVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGD 832

Query: 487  QVHAEFLGFKNGDI-DEMTLQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLF 660
             VH EF+G  N DI D +TLQ  IEK +R NGE+A   LD KM S+ N++ ++ +   L 
Sbjct: 833  IVHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLL 892

Query: 661  PSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLP 840
                   G+LKP  +NC  LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLP
Sbjct: 893  SD-----GILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLP 947

Query: 841  CFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSL 1020
            CF PWD S RAGGFI DR+LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+L
Sbjct: 948  CFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1007

Query: 1021 ECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENA 1200
            ECLKVCYDHTVRDADGS++QF YGEDGVDVH TSF++KF+ L+ N+++V      Q +  
Sbjct: 1008 ECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLD-- 1065

Query: 1201 QFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGE 1380
                S  Y+ +LP+AL+++  +F     K+ +    S K                A+PGE
Sbjct: 1066 ---RSSPYINKLPDALKEKAENFFRDSLKQRN--LGSLKRAEFLKLMEHKYVSCLAQPGE 1120

Query: 1381 PVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPL 1560
             VGV+A+QS+GEP+TQMTLNTFH AG+ GE+NVTLGIPRLQEI+M A+ +I+TP MTCPL
Sbjct: 1121 SVGVLASQSVGEPATQMTLNTFHLAGR-GEMNVTLGIPRLQEIVMAAARDIKTPFMTCPL 1179

Query: 1561 RRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPR 1740
            R  K+ ++A  LA KL K++VAD+++SM+V VVP SV   Q C++YKL MKLY P+ YP+
Sbjct: 1180 RSNKSMEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPK 1239

Query: 1741 FSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNES-GDGEETDDDLGS 1917
            +SDI+L+D E+TL I FV ELE AI  H+ +LSKISGIK      +S  +  E     GS
Sbjct: 1240 YSDITLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGS 1299

Query: 1918 KRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSEN 2097
            + +  G                         QKR+ Q  DE+DYED   E     + SE 
Sbjct: 1300 ESETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEE 1359

Query: 2098 IEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSGAK-LNEKHKSDHEGKK 2274
            IE +                +++VDD + + DA D      +S +K + EK     E KK
Sbjct: 1360 IEND----------------EDNVDDNMTL-DASDSEGLDELSESKSIFEKDSLKREKKK 1402

Query: 2275 TKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCS 2454
            ++P   K  ++R VFV+A+G+ F++H +FT EP ILL+EIA ++AK V I+ +G + +C 
Sbjct: 1403 SRPTTRK--YDRAVFVKAKGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECK 1460

Query: 2455 VVE-----------------------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDI 2565
             V                        K+K   LQT+GV+F+ FWE+QDDLDV  I SN++
Sbjct: 1461 AVTCKESGVMYYGEDSRKRDDIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNV 1520

Query: 2566 HAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAV 2742
            HA+   YGVEAAR T+I++V  VF+ +GISVNIRHLTL+ADFMT  G YRPM+R+G +A 
Sbjct: 1521 HAMLNAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIAD 1580

Query: 2743 STSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
             TSP  KM +ETA++FI+EAAYHG+VD LE+PS+RICLGLPVKMGTGC DL+QK+E
Sbjct: 1581 CTSPFIKMCFETASKFIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  936 bits (2420), Expect = 0.0
 Identities = 524/1012 (51%), Positives = 681/1012 (67%), Gaps = 49/1012 (4%)
 Frame = +1

Query: 22   KFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIR 201
            K GQ + +++ + E+  +LPA+WKP PLWTGKQV+T++L+H+T+  G  PF V+K   I 
Sbjct: 668  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQ--GSPPFFVEKDVKIP 725

Query: 202  KEYF-----GSQSRE--------------GKFFIHKNYFVHGVIDKSQFGKYGLIHTVQE 324
            + +       S+ +E                  I KN  V GVIDK+QFG YGL+HTVQE
Sbjct: 726  RGFLILDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQE 785

Query: 325  LYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHA 498
            LYGS+ AG+LLS +SRLFTVFLQ HGFTCGVDDLL+++ +D ER K  +   ++GEQVH 
Sbjct: 786  LYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHL 845

Query: 499  EFLGFKNGD-IDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSS 675
             FL  K+G+ +D MTLQ  IEK +  NGE+A   LD+ M+S+  + T   N K+     S
Sbjct: 846  GFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTG--NSKVLKDLLS 903

Query: 676  PVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPW 855
              GLLKP  +NC  LMT SGAKG   NFQQISS LGQQ+LEGKRVPRM+SGKTLPCFPPW
Sbjct: 904  E-GLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPW 962

Query: 856  DPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKV 1035
            D +SRAGGFI DR+LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+
Sbjct: 963  DWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKI 1022

Query: 1036 CYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINS 1215
            CYDHTVRDADGSV+QF YGEDGVDVHKT+F++KF+ LA NQ ++ E     + + Q    
Sbjct: 1023 CYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYE-----NSHHQLGKY 1077

Query: 1216 DGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVI 1395
            + ++ ELP AL ++     N LSK        ++                A+PGEPVGV+
Sbjct: 1078 NVFINELPSALREKGEFIYNSLSKDKVPGLVLKED--FIRLLENKYLSSLAQPGEPVGVL 1135

Query: 1396 AAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKT 1575
            AAQSIGEPSTQMTLNTFHHAG+G E+NVTLGIPRLQEILM AS++I+TP+MTCPL+ G +
Sbjct: 1136 AAQSIGEPSTQMTLNTFHHAGRG-EMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYS 1194

Query: 1576 RDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDIS 1755
             D A  LA KL K++VAD++ESM V VVPFS  K + C++YKL++  Y  E   +   IS
Sbjct: 1195 MDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHIS 1254

Query: 1756 LKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAG 1935
             +D E TLE +F++ELE  I   + +LSKI+GIK  +  ++S    E D+   S++++  
Sbjct: 1255 PEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSSRQEE-- 1312

Query: 1936 XXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPS 2115
                                     +K++ QA DEMDYEDD  E++++         E S
Sbjct: 1313 -----MDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDS-EDDLN-------AKESS 1359

Query: 2116 AGSESEVDQVDTE--TDNDVDDKVQIFDAEDESRARSVSGAKLNEK-HKSDHEGKKTKPK 2286
             G ESEVDQ D    T+ND+ + V+   +E++     VS +   EK  ++  E KK K +
Sbjct: 1360 TGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSE 1419

Query: 2287 RAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV-- 2460
              +K  +R++FVEA+   FEVH +FT+EP+ LLS+I Q+AA+ V I+R+G I QC  +  
Sbjct: 1420 LVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITC 1479

Query: 2461 ---------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIF 2577
                                 EK+K   LQT+GV+F+  WEMQD+LDV  I SNDIHA+ 
Sbjct: 1480 KEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAML 1539

Query: 2578 QTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSP 2754
            QTYGVEAARAT+I+++  +F  +GISVNIRHL+LVAD+MT  G YRPMSR  G++ S SP
Sbjct: 1540 QTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISP 1599

Query: 2755 LSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
             S+M++ETA +FI++AA HGEVD LE+PS+RICLGLPVKMGTG FDLMQK+E
Sbjct: 1600 FSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  932 bits (2408), Expect = 0.0
 Identities = 532/1039 (51%), Positives = 674/1039 (64%), Gaps = 69/1039 (6%)
 Frame = +1

Query: 1    ARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTV 180
            A+    GK GQ V    +E+ +  ++PAI KP PLWTGKQVI+S+L+H+TR  G  PFTV
Sbjct: 391  AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR--GRPPFTV 448

Query: 181  KKPSTIRKEYFGSQSR-------------------------------EGKFFIHKNYFVH 267
             K + I +++F ++                                 E K  I++N  V 
Sbjct: 449  GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR 508

Query: 268  GVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLD 447
            GVIDK+QF  YGL+HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D
Sbjct: 509  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 568

Query: 448  MERGKIFE---RRVGEQVHAEFLGFK-NGDIDEMTLQEEIEKVMRVNGESATARLDKMMS 615
            +ER K  E   ++V E  H E  G K N +     LQ EIE+ +R +GE+A   LD+ M 
Sbjct: 569  IERKKQLEDCEKKVTE-AHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMI 627

Query: 616  SRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQEL 795
            S    + NE + K   +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQEL
Sbjct: 628  S----VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQEL 683

Query: 796  EGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVK 975
            EGKRVPRM+SGKTLPCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 684  EGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 743

Query: 976  TSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVN 1155
            TSRSGYLQRCL+K+LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+N
Sbjct: 744  TSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALN 803

Query: 1156 QKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPRGIX 1332
            Q ++ E L      +Q    D   K LP+ L  +   FI +  KK   ++H + KP+   
Sbjct: 804  QDMMSEKLC-----SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFL 855

Query: 1333 XXXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEIL 1512
                       A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEIL
Sbjct: 856  NLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEIL 914

Query: 1513 MRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACT 1692
            M AS +I+TPVMTCPL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C+
Sbjct: 915  MTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICS 974

Query: 1693 LYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQR 1872
            +YKLKM L  P+ Y   SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  
Sbjct: 975  IYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPD 1034

Query: 1873 NESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYE 2052
            ++     E D+D+   R +                           QK++ Q  DEMDYE
Sbjct: 1035 SQRNASNEMDEDVSEGRSRE-TKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYE 1093

Query: 2053 DDDIENEISMIGSENIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAE 2199
            DD   +E+     E  EG   A  ESE+D  + ET          DN  D+  Q   + E
Sbjct: 1094 DD---SEV-----EQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLE 1145

Query: 2200 DESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYI 2379
            + S  +S       EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+I
Sbjct: 1146 NRSNPKS-----REEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHI 1200

Query: 2380 LLSEIAQKAAKNVYIKRAGNINQCSVV---------------------EKDKECELQTAG 2496
            LL++IA+K AK VYI+  G I+QC V                      +K+K   L T G
Sbjct: 1201 LLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTG 1260

Query: 2497 VNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLT 2676
            V+F AFW+M+D +DV  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLT
Sbjct: 1261 VDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLT 1320

Query: 2677 LVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARIC 2853
            L+ADFMT  GRYRPMSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RIC
Sbjct: 1321 LIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRIC 1380

Query: 2854 LGLPVKMGTGCFDLMQKVE 2910
            LGLPVKMGTG FDLMQKVE
Sbjct: 1381 LGLPVKMGTGSFDLMQKVE 1399


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  931 bits (2405), Expect = 0.0
 Identities = 532/1038 (51%), Positives = 673/1038 (64%), Gaps = 68/1038 (6%)
 Frame = +1

Query: 1    ARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTV 180
            A+    GK GQ V    +E+ +  ++PAI KP PLWTGKQVI+S+L+H+TR  G  PFTV
Sbjct: 391  AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR--GRPPFTV 448

Query: 181  KKPSTIRKEYFGSQSR-------------------------------EGKFFIHKNYFVH 267
             K + I +++F ++                                 E K  I++N  V 
Sbjct: 449  GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR 508

Query: 268  GVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLD 447
            GVIDK+QF  YGL+HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D
Sbjct: 509  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 568

Query: 448  MERGKIFE---RRVGEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSS 618
            +ER K  E   ++V E  H E  G K     E  LQ EIE+ +R +GE+A   LD+ M S
Sbjct: 569  IERKKQLEDCEKKVTE-AHYELFGVKVNS--ETELQLEIERTIRRDGETALTALDRKMIS 625

Query: 619  RNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELE 798
                + NE + K   +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQELE
Sbjct: 626  ----VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELE 681

Query: 799  GKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKT 978
            GKRVPRM+SGKTLPCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 682  GKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 741

Query: 979  SRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQ 1158
            SRSGYLQRCL+K+LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+NQ
Sbjct: 742  SRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQ 801

Query: 1159 KVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPRGIXX 1335
             ++ E L      +Q    D   K LP+ L  +   FI +  KK   ++H + KP+    
Sbjct: 802  DMMSEKLC-----SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFLN 853

Query: 1336 XXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILM 1515
                      A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM
Sbjct: 854  LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILM 912

Query: 1516 RASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTL 1695
             AS +I+TPVMTCPL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C++
Sbjct: 913  TASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 972

Query: 1696 YKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRN 1875
            YKLKM L  P+ Y   SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  +
Sbjct: 973  YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1032

Query: 1876 ESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYED 2055
            +     E D+D+   R +                           QK++ Q  DEMDYED
Sbjct: 1033 QRNASNEMDEDVSEGRSRE-TKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYED 1091

Query: 2056 DDIENEISMIGSENIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAED 2202
            D   +E+     E  EG   A  ESE+D  + ET          DN  D+  Q   + E+
Sbjct: 1092 D---SEV-----EQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLEN 1143

Query: 2203 ESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYIL 2382
             S  +S       EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+IL
Sbjct: 1144 RSNPKS-----REEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHIL 1198

Query: 2383 LSEIAQKAAKNVYIKRAGNINQCSVV---------------------EKDKECELQTAGV 2499
            L++IA+K AK VYI+  G I+QC V                      +K+K   L T GV
Sbjct: 1199 LAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGV 1258

Query: 2500 NFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTL 2679
            +F AFW+M+D +DV  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLTL
Sbjct: 1259 DFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTL 1318

Query: 2680 VADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICL 2856
            +ADFMT  GRYRPMSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RICL
Sbjct: 1319 IADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICL 1378

Query: 2857 GLPVKMGTGCFDLMQKVE 2910
            GLPVKMGTG FDLMQKVE
Sbjct: 1379 GLPVKMGTGSFDLMQKVE 1396


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  931 bits (2405), Expect = 0.0
 Identities = 532/1038 (51%), Positives = 673/1038 (64%), Gaps = 68/1038 (6%)
 Frame = +1

Query: 1    ARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTV 180
            A+    GK GQ V    +E+ +  ++PAI KP PLWTGKQVI+S+L+H+TR  G  PFTV
Sbjct: 683  AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR--GRPPFTV 740

Query: 181  KKPSTIRKEYFGSQSR-------------------------------EGKFFIHKNYFVH 267
             K + I +++F ++                                 E K  I++N  V 
Sbjct: 741  GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR 800

Query: 268  GVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLD 447
            GVIDK+QF  YGL+HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D
Sbjct: 801  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 860

Query: 448  MERGKIFE---RRVGEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSS 618
            +ER K  E   ++V E  H E  G K     E  LQ EIE+ +R +GE+A   LD+ M S
Sbjct: 861  IERKKQLEDCEKKVTE-AHYELFGVKVNS--ETELQLEIERTIRRDGETALTALDRKMIS 917

Query: 619  RNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELE 798
                + NE + K   +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQELE
Sbjct: 918  ----VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELE 973

Query: 799  GKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKT 978
            GKRVPRM+SGKTLPCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 974  GKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKT 1033

Query: 979  SRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQ 1158
            SRSGYLQRCL+K+LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+NQ
Sbjct: 1034 SRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQ 1093

Query: 1159 KVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPRGIXX 1335
             ++ E L      +Q    D   K LP+ L  +   FI +  KK   ++H + KP+    
Sbjct: 1094 DMMSEKLC-----SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFLN 1145

Query: 1336 XXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILM 1515
                      A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM
Sbjct: 1146 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILM 1204

Query: 1516 RASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTL 1695
             AS +I+TPVMTCPL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C++
Sbjct: 1205 TASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 1264

Query: 1696 YKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRN 1875
            YKLKM L  P+ Y   SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  +
Sbjct: 1265 YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1324

Query: 1876 ESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYED 2055
            +     E D+D+   R +                           QK++ Q  DEMDYED
Sbjct: 1325 QRNASNEMDEDVSEGRSRE-TKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYED 1383

Query: 2056 DDIENEISMIGSENIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAED 2202
            D   +E+     E  EG   A  ESE+D  + ET          DN  D+  Q   + E+
Sbjct: 1384 D---SEV-----EQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLEN 1435

Query: 2203 ESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYIL 2382
             S  +S       EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+IL
Sbjct: 1436 RSNPKS-----REEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHIL 1490

Query: 2383 LSEIAQKAAKNVYIKRAGNINQCSVV---------------------EKDKECELQTAGV 2499
            L++IA+K AK VYI+  G I+QC V                      +K+K   L T GV
Sbjct: 1491 LAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGV 1550

Query: 2500 NFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTL 2679
            +F AFW+M+D +DV  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLTL
Sbjct: 1551 DFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTL 1610

Query: 2680 VADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICL 2856
            +ADFMT  GRYRPMSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RICL
Sbjct: 1611 IADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICL 1670

Query: 2857 GLPVKMGTGCFDLMQKVE 2910
            GLPVKMGTG FDLMQKVE
Sbjct: 1671 GLPVKMGTGSFDLMQKVE 1688


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  927 bits (2395), Expect = 0.0
 Identities = 516/1039 (49%), Positives = 667/1039 (64%), Gaps = 75/1039 (7%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            GK  + V   N+E  +Q LLPAIWKP PLWTGKQVIT++LNH+TR  G  P TV++ + I
Sbjct: 592  GKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITR--GSPPVTVERDAKI 649

Query: 199  RKEYFGSQSREGK-----------------------------------FFIHKNYFVHGV 273
             + +F  ++ EG+                                     I++N  V GV
Sbjct: 650  PRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRGV 709

Query: 274  IDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDME 453
            IDK+QFG YGL+HTVQE YGS  AG LLS LS LFTV+LQMHGFTCG+DDLL+++S D +
Sbjct: 710  IDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDAK 769

Query: 454  RGKIFE--RRVGEQVHAEFLGFKNGDI-DEMTLQEEIEKVMRVNGESATARLDKMMSSRN 624
                 E    VGE V+ +F+  K+    D + LQ  IE  +R NGESA A LD+ M S+ 
Sbjct: 770  MKDQLESCEDVGENVYRDFIEVKDVKRKDPVELQLNIENFIRSNGESALASLDRRMISQ- 828

Query: 625  AKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGK 804
              L N+ ++          GL KP  +NC +LMT SGAKGS  N QQI+S LGQQELEGK
Sbjct: 829  --LNNKTSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANLQQITSYLGQQELEGK 886

Query: 805  RVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSR 984
            RVP+MISGKTLPCFPPWD SSRAGGFI DR+LTGL PQEYYFHCMAGREGLVDTAVKTSR
Sbjct: 887  RVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSR 946

Query: 985  SGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKV 1164
            SGYLQRC++K+LECLKV YD+TVRDADGS++QF YGEDG+DVH TSF+ KF++L  N+++
Sbjct: 947  SGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMTSFIQKFESLIANKEM 1006

Query: 1165 VQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLS--KKHHSFRHSRKPRGIXXX 1338
                   +    Q    + Y+K+LP AL+++   F++ L+  +K H+F+           
Sbjct: 1007 FH-----KKGRRQMDKLNPYIKDLPLALKEKAEKFVHNLALKEKDHNFQED-----FLKL 1056

Query: 1339 XXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMR 1518
                     A+PGEPVGV+A QS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM 
Sbjct: 1057 MEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMT 1115

Query: 1519 ASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLY 1698
            A+ +I+TPVMTCPL++G+++++A  LA KL K++VAD++ESM+V  VPF +   Q C +Y
Sbjct: 1116 AANDIKTPVMTCPLQKGRSKEEAQELADKLKKITVADIIESMKVTFVPFFIQDGQTCRIY 1175

Query: 1699 KLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNE 1878
            KL+M L+ PE      + S +D EE LEI+FV ELE AI+ H+ +LSKISGIKN    ++
Sbjct: 1176 KLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLLSKISGIKNFTPDSQ 1235

Query: 1879 SGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDD 2058
                 ETD++L  KR Q                            KR+ QA DEMDYE D
Sbjct: 1236 PKASNETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDYE-D 1294

Query: 2059 DIENEISMIGSENIEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSG--- 2229
              ++E+        E + S G ESE+D+ + E +   D ++ + DA DE     +     
Sbjct: 1295 GCDDEVR-------EADLSDGDESEIDEEENEVEIGKDGEIGVIDANDEMPGSPLEEAGD 1347

Query: 2230 -AKLNEKHKSDHEGKKTKPKR------AKKSWERTVFVEAEGLDFEVHLRFTD-EPYILL 2385
             AK   K K    G + + KR       KK  +R +FV A+G  FEVH RF D EP+ILL
Sbjct: 1348 LAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGFHFEVHFRFADNEPHILL 1407

Query: 2386 SEIAQKAAKNVYIKRAGNINQCSVV-----------------------EKDKECELQTAG 2496
            S+IAQK A+ VYI+R+G +  C  +                       EK +   LQT G
Sbjct: 1408 SQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGKDPENKQSFSSKEKKEMPALQTTG 1467

Query: 2497 VNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLT 2676
            ++F  FW++QD LDV  I SN+IHA+  TYGVEAAR T+I+++N VF+ +GISVNIRHLT
Sbjct: 1468 IDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARETIIREINNVFKSYGISVNIRHLT 1527

Query: 2677 LVADFMTQHGRYRPMSRHGMAV-STSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARIC 2853
            L+ADFMT  G YRP++R G  V S SP +KM++ETA++FI+EAAYHG+VD LE+PSARIC
Sbjct: 1528 LIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFIVEAAYHGQVDRLETPSARIC 1587

Query: 2854 LGLPVKMGTGCFDLMQKVE 2910
            LGLPV +GTGCFDLM K+E
Sbjct: 1588 LGLPVNVGTGCFDLMHKME 1606


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  922 bits (2382), Expect = 0.0
 Identities = 506/1006 (50%), Positives = 667/1006 (66%), Gaps = 43/1006 (4%)
 Frame = +1

Query: 22   KFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIR 201
            K GQ V   N+E E+    PAI+KP PLWTGKQVI+++L ++T+  G  PFTV+K + I 
Sbjct: 655  KPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITK--GRPPFTVEKNAKIP 712

Query: 202  KEYFGSQSRE----------------GKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYG 333
              +F +Q+ E                 K  I++N  V GV+DK+QFG YG++HTVQE YG
Sbjct: 713  SSFFKTQTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYG 772

Query: 334  SHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFL 507
            S+ AG+LLS LSRLFT FLQMHGFTCGVDDLLI    D ER    E    +G+ VH EF+
Sbjct: 773  SNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFI 832

Query: 508  G-FKNGDIDEMTLQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPV 681
            G  ++ +ID +T+Q  +EK +R NGE+A   LD KM+S+ N++ ++ V  +L    S   
Sbjct: 833  GVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGS--- 889

Query: 682  GLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDP 861
              LKP  +N   LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFP WD 
Sbjct: 890  --LKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDC 947

Query: 862  SSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCY 1041
            S RAGGFI DR+LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCY
Sbjct: 948  SPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCY 1007

Query: 1042 DHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDG 1221
            DHTVRD+DGS++QF YGEDGVDVH+TSF++KF+ L++N++++      Q +      S  
Sbjct: 1008 DHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLD-----RSSP 1062

Query: 1222 YMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVIAA 1401
            Y+ +LP+AL+ +  +FI   S K  +   S K                A+PGEPVGV+A+
Sbjct: 1063 YINKLPDALKGKAENFIRDFSSKQRN-SSSMKEADFLQVMEHKYVSSLAQPGEPVGVLAS 1121

Query: 1402 QSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRD 1581
            QS+GEP+TQMTLNTFH AG+ GE+NVTLGIPRL EI++ AS+NI+TP MTCPLR  K+ +
Sbjct: 1122 QSVGEPATQMTLNTFHLAGR-GEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSME 1180

Query: 1582 DADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLK 1761
            DA RLA K+ K++VAD++ESM+V VVP +V + + C++YKL MKL+ P+ YP+++D++L+
Sbjct: 1181 DAIRLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLE 1240

Query: 1762 DCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXX 1941
            D EETL + FV ELE AI  H+++L++ISGIK+   ++ S +G + D    S   Q G  
Sbjct: 1241 DWEETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNG-- 1298

Query: 1942 XXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAG 2121
                                   QK + +A DE+DY+D   E        E  +GE S  
Sbjct: 1299 --QTDDDDEVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEE--------ETHDGEKSED 1348

Query: 2122 SESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKS 2301
             E   D  D E DN V+      D E     ++V+   L E  KS    KK K + A K 
Sbjct: 1349 VEVSEDGKDDEDDNGVEVNGDDSDIEVNDSDKNVT---LEETSKS----KKRKFEPASKK 1401

Query: 2302 WERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE------ 2463
            ++R V+V+A G+ FE+H +F  EP+ILL++IAQ+ A+ V I+  G + QC  +       
Sbjct: 1402 YDRRVYVKAGGMRFEIHFKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGV 1461

Query: 2464 -----------------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGV 2592
                             K+K   LQT+G++F+ FWEM+DDL V  + SND+HAI + YGV
Sbjct: 1462 IYYGEDDSKRDDIPSSVKEKIPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGV 1521

Query: 2593 EAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHGMAVSTSPLSKMSY 2772
            EAA+  +I++V  VF+ +GISVNIRHL L+ADFMT  G YRP++R G+A STSP  K+SY
Sbjct: 1522 EAAKEVIIREVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISY 1581

Query: 2773 ETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            ETA+ FI+EAA HG+VD LE+PS+RICLGLPVKMGTGC DL+QK+E
Sbjct: 1582 ETASNFIVEAARHGQVDTLETPSSRICLGLPVKMGTGCIDLIQKLE 1627


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  917 bits (2369), Expect = 0.0
 Identities = 524/1039 (50%), Positives = 672/1039 (64%), Gaps = 69/1039 (6%)
 Frame = +1

Query: 1    ARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTV 180
            A+    GK GQ V    +E+ +  ++PAI KP PLWTGKQVI+S+L+H+TR  G  PFTV
Sbjct: 683  AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR--GRPPFTV 740

Query: 181  KKPSTIRKEYFGSQSR-------------------------------EGKFFIHKNYFVH 267
             K + I +++F ++                                 E K  I++N  V 
Sbjct: 741  GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR 800

Query: 268  GVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLD 447
            GVIDK+QF  YGL+HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D
Sbjct: 801  GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKD 860

Query: 448  MERGKIFE---RRVGEQVHAEFLGFK-NGDIDEMTLQEEIEKVMRVNGESATARLDKMMS 615
            +ER K  E   ++V E  H E  G K N +     LQ EIE+ +R +GE+A   LD+ M 
Sbjct: 861  IERKKQLEDCEKKVTE-AHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMI 919

Query: 616  SRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQEL 795
            S    + NE + K   +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQEL
Sbjct: 920  S----VLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQEL 975

Query: 796  EGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVK 975
            EGKRVPRM+SGKTLPCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVK
Sbjct: 976  EGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1035

Query: 976  TSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVN 1155
            TSRSGYLQRCL+K+LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+N
Sbjct: 1036 TSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALN 1095

Query: 1156 QKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPRGIX 1332
            Q ++ E L      +Q    D   K LP+ L  +   FI +  KK   ++H + KP+   
Sbjct: 1096 QDMMSEKLC-----SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFL 1147

Query: 1333 XXXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEIL 1512
                       A+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEIL
Sbjct: 1148 NLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEIL 1206

Query: 1513 MRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACT 1692
            M AS +I+TPVMTCPL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C+
Sbjct: 1207 MTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICS 1266

Query: 1693 LYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQR 1872
            +YKLKM L  P+ Y   SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  
Sbjct: 1267 IYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPD 1326

Query: 1873 NESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYE 2052
            ++     E D+D+   R +                                + +++ D +
Sbjct: 1327 SQRNASNEMDEDVSEGRSR--------------------------------ETKNDDDDD 1354

Query: 2053 DDDIENEISMIGSENIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAE 2199
            DDD ++E     +E++ G   A  ESE+D  + ET          DN  D+  Q   + E
Sbjct: 1355 DDDADDEER---AEDL-GASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLE 1410

Query: 2200 DESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYI 2379
            + S  +S       EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+I
Sbjct: 1411 NRSNPKS-----REEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHI 1465

Query: 2380 LLSEIAQKAAKNVYIKRAGNINQCSVV---------------------EKDKECELQTAG 2496
            LL++IA+K AK VYI+  G I+QC V                      +K+K   L T G
Sbjct: 1466 LLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTG 1525

Query: 2497 VNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLT 2676
            V+F AFW+M+D +DV  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLT
Sbjct: 1526 VDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLT 1585

Query: 2677 LVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARIC 2853
            L+ADFMT  GRYRPMSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RIC
Sbjct: 1586 LIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRIC 1645

Query: 2854 LGLPVKMGTGCFDLMQKVE 2910
            LGLPVKMGTG FDLMQKVE
Sbjct: 1646 LGLPVKMGTGSFDLMQKVE 1664


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  913 bits (2360), Expect = 0.0
 Identities = 524/1061 (49%), Positives = 669/1061 (63%), Gaps = 93/1061 (8%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G   GK GQ V    +E E+  LLPAIWKP PLWTGKQVIT++LNH+TR  G  PF V++
Sbjct: 686  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR--GRPPFIVER 743

Query: 187  ----PSTIRKEYFGSQSREG---------------------------------------- 234
                P    K  F +  + G                                        
Sbjct: 744  GGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 803

Query: 235  ----------KFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTV 384
                      K  I+KN  V GVIDK+QF  YGL+HTVQELYGS+ AG LLS LSRLFTV
Sbjct: 804  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTV 863

Query: 385  FLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNG-DIDEMTLQEEI 555
            FLQMHGFTCGVDDLLI+K  + ER         +G++VH E L  ++G +ID + L+ EI
Sbjct: 864  FLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEI 923

Query: 556  EKVMRVNGESATARLDKMMSSRNAKLTNE--VNDKLFPSNSSPVGLLKPFPRNCFFLMTA 729
            EK MR  G++A A  D  M+S+  K T+   +ND L        GLLKP  +N   LMT 
Sbjct: 924  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINDLLSE------GLLKPTGKNWISLMTT 977

Query: 730  SGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGL 909
            SGAKGS+VNFQQISS LGQQELEGKRVPRM+SGKTLP F PWD + RAGGFI DR+LTGL
Sbjct: 978  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 1037

Query: 910  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCY 1089
            RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YD++VRDADGS+VQFCY
Sbjct: 1038 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1097

Query: 1090 GEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDF 1269
            GEDGVDVH+TSF+SKF  LA NQ+++ +  S Q +      S+ Y+ ELP+AL+     F
Sbjct: 1098 GEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLD-----ASNAYIMELPDALKDNAEKF 1152

Query: 1270 INKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFH 1449
             +K         +    +              A+PGEPVG++AAQS+GEPSTQMTLNTFH
Sbjct: 1153 ADKF------LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFH 1206

Query: 1450 HAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVAD 1629
             AG+ GE+NVTLGIPRLQEIL  AS++I+TPV+TCPL  GKT DDA RLA KL K++VAD
Sbjct: 1207 LAGR-GEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVAD 1265

Query: 1630 LVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELER 1809
            +V+ + V V  F+ H  QACT+Y L M+LY P+ YP ++DI+L+D EE LE++FV ELE 
Sbjct: 1266 IVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELED 1325

Query: 1810 AIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXX 1989
             I+ HL +LSKI+GIKN+          ETD +      Q                    
Sbjct: 1326 TIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSGNVSQC----RGDDDDADDADGEEA 1381

Query: 1990 XXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTETDND- 2166
                    K++ +A DE DYED   E E++       +G  +AG  SE+DQ ++E D+D 
Sbjct: 1382 EDLGMDAHKQKQRATDEKDYEDGS-EGEMN-------DGVSAAGFGSEIDQAESEIDDDQ 1433

Query: 2167 -----VDDKV--QIFDAEDES--RARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVF 2319
                  DD+   +I +++D++    +  +     +K KS  + KK + K  KK  +R ++
Sbjct: 1434 AETEIEDDRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIY 1493

Query: 2320 VEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV------------- 2460
            V A G+ FE H +F +EP ILL++IA+  AK VYI+ +G I+QC V              
Sbjct: 1494 VAARGMHFEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKD 1553

Query: 2461 ----------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARAT 2610
                      EK+K   L T GV+F AFW++QD +DV  I SN+I A+ +TYGVEAAR T
Sbjct: 1554 PKKREDIKPEEKEKVQALHTTGVDFHAFWQLQDFIDVRYIYSNNIQAMLETYGVEAARET 1613

Query: 2611 LIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAE 2787
            +I+++  VF  +GISVN RHL+L+ADFMT  G YRPMSR  G+A S SP SKM++E A++
Sbjct: 1614 IIREIKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFEIASK 1673

Query: 2788 FIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            FI+EAA +G+VD L++PSARICLGLPVKMGTG FDLMQK+E
Sbjct: 1674 FIVEAASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLE 1714


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  912 bits (2357), Expect = 0.0
 Identities = 523/1060 (49%), Positives = 665/1060 (62%), Gaps = 92/1060 (8%)
 Frame = +1

Query: 7    GGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKK 186
            G   GK GQ V    +E E+  LLPAIWKP PLWTGKQVIT++LNH+TR  G  PF V++
Sbjct: 686  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR--GRPPFVVER 743

Query: 187  ----PSTIRKEYFGSQSR------------------------------------------ 228
                P    K  F +  +                                          
Sbjct: 744  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 803

Query: 229  --------EGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTV 384
                    E K  I+KN  V GVIDK+QF  YGL+HTVQELYGS+ AG LLS LSRLFTV
Sbjct: 804  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTV 863

Query: 385  FLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNG-DIDEMTLQEEI 555
            FLQMHGFTCGVDDLLI+K  + ER         +G++VH E L  ++G +ID + L+ EI
Sbjct: 864  FLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEI 923

Query: 556  EKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTAS 732
            EK MR  G++A A  D KM S  N   ++ V ++L        GLLKP  +N   LMT S
Sbjct: 924  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE-----GLLKPTGKNWISLMTTS 978

Query: 733  GAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLR 912
            GAKGS+VNFQQISS LGQQELEGKRVPRM+SGKTLP F PWD + RAGGFI DR+LTGLR
Sbjct: 979  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 1038

Query: 913  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYG 1092
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YD++VRDADGS+VQFCYG
Sbjct: 1039 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1098

Query: 1093 EDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFI 1272
            EDGVDVH+TSF+SKF  LA NQ+++ +  S Q +      S+ Y+ ELP+AL+     F 
Sbjct: 1099 EDGVDVHQTSFISKFDALAANQEMIYKKCSGQLD-----ASNAYIMELPDALKDNAEKFA 1153

Query: 1273 NKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVIAAQSIGEPSTQMTLNTFHH 1452
            +K         +    +              A+PGEPVG++A+QS+GEPSTQMTLNTFH 
Sbjct: 1154 DKF------LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1207

Query: 1453 AGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADL 1632
            AG+ GE+NVTLGIPRLQEIL  AS++I+TPV+TCPL  GKT DDA RLA KL K++VAD+
Sbjct: 1208 AGR-GEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADI 1266

Query: 1633 VESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERA 1812
            V+ + V V  F+ H  QAC++Y L M+LY P+ YP ++DI+L+D EE LE++FV ELE  
Sbjct: 1267 VKKISVKVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDT 1326

Query: 1813 IRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXX 1992
            I+ HL +LSKI+GIKN+          ETD D      Q                     
Sbjct: 1327 IQNHLLLLSKINGIKNVASGLTQKASNETDQDGSGNVSQC----RGDDDDADDADGEEAE 1382

Query: 1993 XXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTETDND-- 2166
                   K++ +A DE DYED   E        E  +G  +AG  SE+DQ ++E D+D  
Sbjct: 1383 DLGMDAHKQKQRATDEKDYEDGSEE--------EMNDGVSAAGFGSEIDQAESEIDDDQA 1434

Query: 2167 ----VDDKV--QIFDAEDES--RARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFV 2322
                 DD+   +I  ++D++    +  +     +K KS  + KK + K  KK  +R ++V
Sbjct: 1435 ETEIEDDRATNEIETSQDQASENLKPFTPKSSKKKSKSKSKRKKARAKLVKKDTDRAIYV 1494

Query: 2323 EAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV-------------- 2460
             A G+ FE H +F +EP ILL++IA+  AK VYI+ +G I+QC V               
Sbjct: 1495 AARGMHFEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKDP 1554

Query: 2461 ---------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATL 2613
                     EK+K   L T GV+F AFW +QD +DV  I SN+I A+ +TYGVEAAR T+
Sbjct: 1555 KTREDIKPEEKEKVQALHTTGVDFHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARETI 1614

Query: 2614 IKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEF 2790
            I+++  VF  +GISVN RHL+L+ADFMT  G YRPMSR  G+A S SP SKM++ETA++F
Sbjct: 1615 IREIKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKF 1674

Query: 2791 IIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 2910
            I+EAA +G+VD L++PSARICLGLPVKMGTG FDLMQK+E
Sbjct: 1675 IVEAASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLE 1714


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  909 bits (2350), Expect = 0.0
 Identities = 514/1024 (50%), Positives = 655/1024 (63%), Gaps = 64/1024 (6%)
 Frame = +1

Query: 28   GQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKE 207
            G  VS+I  +D + ++LPAI KP PLWTGKQVIT+ILNH+T+  G  PFTV++   I +E
Sbjct: 692  GIKVSAIKDDDALGFVLPAILKPKPLWTGKQVITTILNHLTK--GRSPFTVEQKGKISEE 749

Query: 208  Y-----FGSQSREGKF-------FIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGV 351
            +     F     E K        +I  N  + G+IDK+QFG+YG++HTV ELYG+  AG+
Sbjct: 750  HLTPKKFEESESERKIAISELVLYIKNNELIKGMIDKAQFGQYGIVHTVHELYGADTAGI 809

Query: 352  LLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFER--RVGEQVHAEFLGFKNGD 525
            LLST SRLFT+FLQ HGFTCGVDDLL+ +  D  R  I     +  E+ H  F+  K G 
Sbjct: 810  LLSTFSRLFTLFLQFHGFTCGVDDLLLCQKADEARRSIISESDKYSEKAHGTFI--KTGK 867

Query: 526  IDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPR 705
             D   LQ E+EKV+R +GESAT  +D+ +S+  + +T++VN  +FP      GL KPFP 
Sbjct: 868  -DGEELQMEVEKVIRRDGESATVNMDREISNALSNITSDVNKNVFP-----YGLQKPFPG 921

Query: 706  NCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFI 885
            NC  LMTA+GAKG  VN  QISSLLGQQELEGKRVPRM+SGKTLPCF PWD SSRAGGFI
Sbjct: 922  NCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTSSRAGGFI 981

Query: 886  SDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDAD 1065
            SDR+LTGLRPQEYYFHCMAGREGL DTAVKTSRSGYLQRCL+K LE LKV YDHTVRD D
Sbjct: 982  SDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLESLKVSYDHTVRDVD 1041

Query: 1066 GSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEA 1245
            GS+VQFCYGEDGVDV KTSFL+KFK LA N+KVV + +    +N      +GY+  LP+ 
Sbjct: 1042 GSIVQFCYGEDGVDVLKTSFLNKFKELADNKKVVLDKIKGHKQNQLLSKPNGYITTLPKK 1101

Query: 1246 LEKRTRDFINKLSKKHHS-----FRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVIAAQSI 1410
            L    ++F+  L +K  S          K +G+             +PGE VGV+AAQSI
Sbjct: 1102 LVAEAKEFLKLLKEKKSSDIKKGLMCDIKKKGLMKLLKVKYLYSLVDPGEAVGVVAAQSI 1161

Query: 1411 GEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDAD 1590
            GEPSTQMTLNTFH AG+G E+NVTLGIPRL+EILM AS NI TP+M CPL    TRDDA 
Sbjct: 1162 GEPSTQMTLNTFHLAGRG-EMNVTLGIPRLKEILMTASANISTPIMVCPLLEKWTRDDAR 1220

Query: 1591 RLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCE 1770
            R+AAKL +V VAD+VE +EVC VPF        TLYKL+MKLY  + YP  SD+++ +C+
Sbjct: 1221 RVAAKLRRVRVADIVEKIEVCTVPFYNTNGHVSTLYKLQMKLYPQKHYPPQSDLTVDECQ 1280

Query: 1771 ETLEIMFVDELERAIRTHLTMLSKISGIKNIL------------QRNES--GDGEET--- 1899
             TL  +FVD +E AI  HL +L KI+ I+ +             + +ES  GDGEET   
Sbjct: 1281 TTLRTVFVDAMEHAIEKHLDLLHKINEIRAVKVNDAEGSLSDGGEESESRHGDGEETGMS 1340

Query: 1900 --------DDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYED 2055
                    DDDLG+                               +KR+ Q RDEM+Y D
Sbjct: 1341 DGDDENDNDDDLGTDA-----------------------------EKRKRQERDEMEY-D 1370

Query: 2056 DDIENEISMIGSENIEG-------EPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRA 2214
            DD ENE  M      E        E  A S  ++ + D E      D   + D    ++ 
Sbjct: 1371 DDTENEEGMDSESEEETKVKHQSEEDPAESGDDLQEADEEHKTSKSDMTSVDDMSYSAKK 1430

Query: 2215 RSVSG-----AKLNEKH----KSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTD 2367
               S      AKL E+     KSD   +     + KK  +RTV VE++ LDFE+H  F D
Sbjct: 1431 VKKSKDKHETAKLQERTHTEGKSDERKQDQMTYKRKKKLKRTVHVESKDLDFEIHYAFCD 1490

Query: 2368 EPYILLSEIAQKAAKNVYIKRAGNINQCSVVEKDKE---CELQTAGVNFQAFWEMQDDLD 2538
            EP+ILL++IAQK A++++++   NI++C V EK ++     L+T+GVNF+ FW ++  + 
Sbjct: 1491 EPHILLAQIAQKTARSIFVRACKNIDKCEVEEKKEKGSSAVLKTSGVNFEVFWNLRKYIS 1550

Query: 2539 VNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRP 2718
            +N+I +NDIHA+ +TYGVEAARAT+I++VN VF  +GI V+ RHL+++ADFMT  G YRP
Sbjct: 1551 INKITTNDIHAMLKTYGVEAARATIIEEVNHVFGVYGIKVDPRHLSMIADFMTFDGGYRP 1610

Query: 2719 MSRHGMA-VSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDL 2895
            M+R GM   STSP  KM++ETA +FI++AA HGE D LE PSA ICLG P K+GTG F L
Sbjct: 1611 MNRLGMGQFSTSPFGKMTFETATKFIVDAATHGESDSLECPSASICLGKPAKVGTGTFGL 1670

Query: 2896 MQKV 2907
            +Q +
Sbjct: 1671 LQNL 1674


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  903 bits (2334), Expect = 0.0
 Identities = 508/1021 (49%), Positives = 665/1021 (65%), Gaps = 57/1021 (5%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            GK GQ +   N++ E+    PAI+KP PLWTGKQVI+++L ++T+  G  PFTV+K + I
Sbjct: 662  GKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITK--GSPPFTVEKNAKI 719

Query: 199  RKEYFGSQSREGK-----------------FFIHKNYFVHGVIDKSQFGKYGLIHTVQEL 327
               +F ++ REGK                   I++N  V GV+DK+QFG YG++HTVQE 
Sbjct: 720  PSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEF 779

Query: 328  YGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAE 501
            YGS+ AG+LLS LSRLFT FLQMHGFTCGVDDLL+ +  D ER    E    +G+ VH E
Sbjct: 780  YGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHRE 839

Query: 502  FLGFKNGD-IDEMTLQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSS 675
            F+G   GD ID +T+Q  +EK +R NGE+A   LD KM+S+ N++ +  V   L      
Sbjct: 840  FIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSE--- 896

Query: 676  PVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPW 855
              G+LKP  +N   LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF  W
Sbjct: 897  --GILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSW 954

Query: 856  DPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKV 1035
            D S RAGGFI DR+LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKV
Sbjct: 955  DCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKV 1014

Query: 1036 CYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINS 1215
            CYDHTVRDADGS++QF YGEDGVDVH+TSF++KF+ L+ N+++V      + +      S
Sbjct: 1015 CYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELD-----KS 1069

Query: 1216 DGYMKELPEALEKRTRDFI--------NKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAE 1371
              Y+ +LP+AL+ +   FI        N  S  H +F H  + + +            A+
Sbjct: 1070 SPYINKLPDALKGKAEKFILDSSSKQRNSGSMTHTNFLHLMEHKYV---------SSLAQ 1120

Query: 1372 PGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMT 1551
            PGEPVGV+A+QS+GEP+TQMTLNTFH AG+ GE+NVTLGIPRLQEIL  AS +I+TP MT
Sbjct: 1121 PGEPVGVLASQSVGEPATQMTLNTFHLAGR-GEMNVTLGIPRLQEILTAASAHIKTPFMT 1179

Query: 1552 CPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPEL 1731
            CPLR  K+ +DA RLA K+ K++VAD++ESM+V VVP +V   + C++YKL MKL+ P+ 
Sbjct: 1180 CPLRPNKSMEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKH 1239

Query: 1732 YPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDL 1911
            YP+++D++LKD EETL + FV  LE AI  ++ +L+KISGI N     +       +DD 
Sbjct: 1240 YPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDP 1299

Query: 1912 GSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIG- 2088
             +     G                         QK + Q  D++DY DD  E E    G 
Sbjct: 1300 SN-----GKTNDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDY-DDGPEEETLEDGE 1353

Query: 2089 -SENIEG-EPSAGSESEVDQVDTETDNDVDDKVQIFDAE-DESRARSVSGAKLNEKHKSD 2259
             SE++EG E +  +E   D  D + D D        D E +E+  +   GA  ++     
Sbjct: 1354 LSEDLEGVEDAKDNEYVKDDGDGKDDEDGKGDEDGSDIEVNENDKKVTLGANYSQ---GP 1410

Query: 2260 HEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGN 2439
             E  K++P    K ++R V+V+ E   FE+H +FT EP+ILL++IAQK A+ V I+  G 
Sbjct: 1411 EENSKSQP--VSKKFDRRVYVKFEKRHFEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGK 1468

Query: 2440 INQCSVVE-----------------------KDKECELQTAGVNFQAFWEMQDDLDVNQI 2550
            + QC  +                        K+K   LQT+G++F++FWEMQDDL+V  +
Sbjct: 1469 VGQCKAITCKESGVIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYV 1528

Query: 2551 LSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRH 2730
             SN++HAI  TYGVEAA+ T+I++V  VF+ +GISVNIRHL L+ADFMT  G YRPMSR 
Sbjct: 1529 YSNNVHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRK 1588

Query: 2731 G-MAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKV 2907
            G +A STSP  K+ +ETA+ FI+EAA HG+VD L+SPSARICLGLPVKMGTGC +L+QK+
Sbjct: 1589 GSIADSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKL 1648

Query: 2908 E 2910
            E
Sbjct: 1649 E 1649


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  899 bits (2324), Expect = 0.0
 Identities = 505/1022 (49%), Positives = 657/1022 (64%), Gaps = 58/1022 (5%)
 Frame = +1

Query: 19   GKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTI 198
            GK GQ +   N++ E+    PAI+KP PLWTGKQVI+++L ++T+  G  PFTV+K + I
Sbjct: 666  GKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITK--GSPPFTVEKNAKI 723

Query: 199  RKEYFGSQSREGK-----------------FFIHKNYFVHGVIDKSQFGKYGLIHTVQEL 327
               +F ++ REGK                   I+KN  V GV+DK+QFG YG++HTVQE 
Sbjct: 724  PSSFFKTRMREGKKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEF 783

Query: 328  YGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAE 501
            YGS+ AG LLS LSRLFT FLQMHGFTCGVDDLL+ +  D ER    E    +G+ VH E
Sbjct: 784  YGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHRE 843

Query: 502  FLGFKNGD-IDEMTLQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSS 675
            F+G   GD ID +T+Q  +EK +R NGE+A   LD KM+S+ N++ ++ V  +L      
Sbjct: 844  FIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSE--- 900

Query: 676  PVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPW 855
              G+LKP  +N   LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF  W
Sbjct: 901  --GILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSW 958

Query: 856  DPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKV 1035
            D S RAGGFI DR+LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKV
Sbjct: 959  DCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKV 1018

Query: 1036 CYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINS 1215
            CYDHTVRDADGS++QF YGEDGVDVH+TSF++KF+ L+ N+++V      + +      S
Sbjct: 1019 CYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDE-----S 1073

Query: 1216 DGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPRGIXXXXXXXXXXXXAEPGEPVGVI 1395
              Y+ +LP+AL+ +   FI   S K  +   S                  A+PGEPVGV+
Sbjct: 1074 SPYINKLPDALKGKAEKFIRDSSSKQRN-SGSMTHTNFLQLMEHKYVSSLAQPGEPVGVL 1132

Query: 1396 AAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKT 1575
            A+QS+GEP+TQMTLNTFH AG+G E+NVTLGIPRLQEIL  AS +I+TP MTCPLR  K+
Sbjct: 1133 ASQSVGEPATQMTLNTFHLAGRG-EMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKS 1191

Query: 1576 RDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDIS 1755
             +DA RLA K+ K++VAD++ESM+V VVP +V   + C++YKL MKL+ P+ YP+++D++
Sbjct: 1192 MEDAIRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVT 1251

Query: 1756 LKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAG 1935
            LKD EETL + FV  LE AI  ++ +L+KISGI N     +       +DD  + +    
Sbjct: 1252 LKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTN-- 1309

Query: 1936 XXXXXXXXXXXXXXXXXXXXXXXXXQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPS 2115
                                     QK + Q  D++DY+D   E  +        +GE S
Sbjct: 1310 -DDDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLE-------DGELS 1361

Query: 2116 AGSESEVDQVDTE-TDNDVDDKVQIFDAEDESRARSVSGAKLNEKHK--------SDHEG 2268
               E   D  D E   +D D K    D ED       S  ++NE  K        S    
Sbjct: 1362 EDLEGVEDAKDNEHVKDDGDGK----DDEDGKGDEDGSDIEVNENDKKVTLGVNYSQGPE 1417

Query: 2269 KKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSE----IAQKAAKNVYIKRAG 2436
            + +K +   K ++R V+V+ E   FE+H +FTDEP+ILL++    IAQK A+ V I+  G
Sbjct: 1418 ENSKSQPVSKKFDRRVYVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFG 1477

Query: 2437 NINQCSVVE-----------------------KDKECELQTAGVNFQAFWEMQDDLDVNQ 2547
             + QC  +                        K+K   LQT+G++F++FWEMQDDL+V  
Sbjct: 1478 KVGQCKAITCKESGVIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRY 1537

Query: 2548 ILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR 2727
            + SN++HAI  TYGVEAA+ T+I++V  VF+ +GISVNIRHL L+ADFMT  G YRPMSR
Sbjct: 1538 VYSNNVHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSR 1597

Query: 2728 HG-MAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQK 2904
             G +A STSP  K+ +ETA+ FI+EAA HG+VD L+SPSARICLGLPVKMGTGC +L+QK
Sbjct: 1598 KGSIADSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQK 1657

Query: 2905 VE 2910
            +E
Sbjct: 1658 LE 1659