BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00004300
         (703 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK26380.1| unknown [Picea sitchensis]                             249   6e-64
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   244   2e-62
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   244   2e-62
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   243   4e-62
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   239   6e-61
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   234   3e-59
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   232   8e-59
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   231   2e-58
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   231   2e-58
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   230   3e-58
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   230   4e-58
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   230   4e-58
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   230   4e-58
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S...   229   5e-58
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   228   1e-57
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S...   227   3e-57
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   227   3e-57
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr...   223   6e-56
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   221   2e-55
ref|XP_007022260.1| RNA polymerase Rpb8 isoform 1 [Theobroma cac...   218   2e-54

>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  249 bits (636), Expect = 6e-64
 Identities = 122/145 (84%), Positives = 133/145 (91%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           MVE+LFEDIFT+TRIDPDGKKFDKVSRIEARSEQFDMYM LDVN ++YP+ VGEKF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           APTL+LDGTPD GY+ QG RKSLADK+EYVM+GKLY LSEEGSG NVKVEI ASFGGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
           +LKGDPSNA NFELDQRLFLLMRKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  244 bits (624), Expect = 2e-62
 Identities = 120/148 (81%), Positives = 137/148 (92%), Gaps = 1/148 (0%)
 Frame = +1

Query: 238 RRMVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTM 417
           R+MVE LFEDIFT+TR+DPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+  G++FTM
Sbjct: 249 RKMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTM 308

Query: 418 VLAPTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEE-GSGINVKVEIYASFGG 594
           VLAPTL+LDGTPDTG+YTQ  RK+LADKF+YVMHGKLYK+SE+  SG   KVEIYASFGG
Sbjct: 309 VLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGG 368

Query: 595 LLMMLKGDPSNAANFELDQRLFLLMRKV 678
           LLMMLKGDPS+AA+FELDQRLFLL+RKV
Sbjct: 369 LLMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  244 bits (624), Expect = 2e-62
 Identities = 120/148 (81%), Positives = 137/148 (92%), Gaps = 1/148 (0%)
 Frame = +1

Query: 238 RRMVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTM 417
           R+MVE LFEDIFT+TR+DPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+  G++FTM
Sbjct: 44  RKMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTM 103

Query: 418 VLAPTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEE-GSGINVKVEIYASFGG 594
           VLAPTL+LDGTPDTG+YTQ  RK+LADKF+YVMHGKLYK+SE+  SG   KVEIYASFGG
Sbjct: 104 VLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGG 163

Query: 595 LLMMLKGDPSNAANFELDQRLFLLMRKV 678
           LLMMLKGDPS+AA+FELDQRLFLL+RKV
Sbjct: 164 LLMMLKGDPSSAASFELDQRLFLLIRKV 191


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  243 bits (620), Expect = 4e-62
 Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           MVE LFEDIFT+TR+DPDGKKFD+VSRIEARSEQFDMYMQLDV TE+YP+  G+KFTMVL
Sbjct: 1   MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN-VKVEIYASFGGLL 600
           APTL+LDGTPD G+YTQ  RK+LADK++YVMHGKLYK+SE+GSG    KVEIYASFGGLL
Sbjct: 61  APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120

Query: 601 MMLKGDPSNAANFELDQRLFLLMRKV 678
           MMLKGDPS AANFELDQRLFLL+RKV
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  239 bits (610), Expect = 6e-61
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 2/147 (1%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIFT+TR+DPDGKKFD+VSRIEAR+EQ ++YMQLDV T++YP+H G+KFTMVL
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSE--EGSGINVKVEIYASFGGL 597
            PTL+LDGTPDTG++TQ  RK+LADK+EYVMHGKLYK+SE  E SG N KVE+YASFGGL
Sbjct: 61  VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120

Query: 598 LMMLKGDPSNAANFELDQRLFLLMRKV 678
           LMMLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  234 bits (596), Expect = 3e-59
 Identities = 115/146 (78%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIF + RIDPDGKKFD+V+RIEARSEQF MYMQLDV T +YP+H G+KFTMVL
Sbjct: 1   MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN-VKVEIYASFGGLL 600
           APTL+LDGTPDTGYYTQ  RK+LADK++YVMHGKLYK+SE+ SG    KVE YASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120

Query: 601 MMLKGDPSNAANFELDQRLFLLMRKV 678
           M+LKGDPS+AAN ELDQRLFLLMRKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  232 bits (592), Expect = 8e-59
 Identities = 112/148 (75%), Positives = 133/148 (89%), Gaps = 3/148 (2%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIF +TRIDPDGKKFD+V+RIEARSEQ +MYMQLD+ T++YP+H+G+KFTMVL
Sbjct: 1   MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN---VKVEIYASFGG 594
           APTL+LDGTPDTGYYTQ  RK+LADK++YVMHGKLYK+SE+ S  +    KVEIYASFGG
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120

Query: 595 LLMMLKGDPSNAANFELDQRLFLLMRKV 678
           LLM+LKGDPS+AAN ELDQ+LFLL+RKV
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  231 bits (588), Expect = 2e-58
 Identities = 115/146 (78%), Positives = 131/146 (89%), Gaps = 1/146 (0%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIF ++RIDPDGKKFD+V+RIEARSEQ  MYMQLDV T++YP+H G+KFTMVL
Sbjct: 1   MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN-VKVEIYASFGGLL 600
           APTL+LDGTPDTGYYTQ  RK+LADK++YVMHGKLYK+SE+ SG    KVEIYASFGGLL
Sbjct: 59  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118

Query: 601 MMLKGDPSNAANFELDQRLFLLMRKV 678
           M+LKGDPS+AAN ELDQRLFLLMRKV
Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  231 bits (588), Expect = 2e-58
 Identities = 114/145 (78%), Positives = 123/145 (84%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M   LF DIF + +IDPDGKKFDKVSRIEA+SEQ DMYMQLDVNTEIYP+H GEKF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           A TL LDGTPDTGYYTQ  RKSLADKFEYVMHGKLYK+SEEGSG NVK  IY SFGGLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
           ML GDP+N A  +LDQR+FLL+RKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  230 bits (587), Expect = 3e-58
 Identities = 111/145 (76%), Positives = 130/145 (89%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           MVE LFEDIFT+T+ DPDGKKFD+V+RIEARSEQFDM+M LDVNTEIYP+ V +KF MVL
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           A TL+LDGTPDTGY+ QG +KSLADKFEYVMHGKLY++SEEGSG +VK +I+ SFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
            L+GDPS AA FELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  230 bits (586), Expect = 4e-58
 Identities = 110/145 (75%), Positives = 130/145 (89%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           MVE LFEDIFT+T+ DPDGKKFD+V+RIEARSEQFDM+M LD+NTEIYP+ V +KF MVL
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           A TL+LDGTPDTGY+ QG +KSLADKFEYVMHGKLY++SEEGSG +VK +I+ SFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
            L+GDPS AA FELDQ++FLL+RKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  230 bits (586), Expect = 4e-58
 Identities = 111/148 (75%), Positives = 132/148 (89%), Gaps = 3/148 (2%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIFT+TR+DPDGKKFD+VSRIEARS+QFDMYMQLDV T++YP+H G++FTMVL
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN---VKVEIYASFGG 594
            PTL+LDGTPD+ ++TQ  RK+LADK+EYVMHGKLYK+SE+    +    KVE+YASFGG
Sbjct: 61  VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120

Query: 595 LLMMLKGDPSNAANFELDQRLFLLMRKV 678
           LL+MLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  230 bits (586), Expect = 4e-58
 Identities = 111/148 (75%), Positives = 132/148 (89%), Gaps = 3/148 (2%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFEDIFT+TR+DPDGKKFD+VSRIEARS+QFDMYMQLDV T++YP+H G++FTMVL
Sbjct: 68  MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGIN---VKVEIYASFGG 594
            PTL+LDGTPD+ ++TQ  RK+LADK+EYVMHGKLYK+SE+    +    KVE+YASFGG
Sbjct: 128 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 187

Query: 595 LLMMLKGDPSNAANFELDQRLFLLMRKV 678
           LL+MLKGDPS+AANFELDQRLFLLMRKV
Sbjct: 188 LLVMLKGDPSSAANFELDQRLFLLMRKV 215


>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
           gi|241919960|gb|EER93104.1| hypothetical protein
           SORBIDRAFT_01g001330 [Sorghum bicolor]
          Length = 145

 Score =  229 bits (585), Expect = 5e-58
 Identities = 112/145 (77%), Positives = 126/145 (86%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFED F ++R+DPDGKKFDKVSR+EARSEQ  MYMQLDV T++YPL  GEKF MVL
Sbjct: 1   MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           APTL+LDGTPDTGYYTQ  RK+LAD +EYVM GKLYK+SE+ S  N KVEIYASFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
           +L+GDPS AA+FELDQRLFLLMRKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  228 bits (581), Expect = 1e-57
 Identities = 110/146 (75%), Positives = 128/146 (87%), Gaps = 1/146 (0%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFED F +TR+DPDGKKFD+VSR+EARSEQ DMYMQLDV T++YP+H GEKF MV+
Sbjct: 1   MSEHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEE-GSGINVKVEIYASFGGLL 600
           APTL+LDGTPDTGYYTQ  RK+LAD +EYVM GKLYK+SE+  S  N KVE+YASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 601 MMLKGDPSNAANFELDQRLFLLMRKV 678
           M+L+GDPS AA+FELDQRLFLL+RKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
           gi|241917379|gb|EER90523.1| hypothetical protein
           SORBIDRAFT_01g001420 [Sorghum bicolor]
          Length = 145

 Score =  227 bits (579), Expect = 3e-57
 Identities = 110/145 (75%), Positives = 125/145 (86%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M E LFED F + R+DPDGKKFD+VSR+EARSEQ  MYMQLDV T++YP+   EKF MVL
Sbjct: 1   MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLM 603
           APTL+LDGTPDTGYYTQ  RK+LAD +EYVMHGKLYK+SE+ S  N KVEIYASFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 604 MLKGDPSNAANFELDQRLFLLMRKV 678
           +L+GDPS AA+FELDQRLFLLMRKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  227 bits (578), Expect = 3e-57
 Identities = 109/146 (74%), Positives = 128/146 (87%), Gaps = 1/146 (0%)
 Frame = +1

Query: 244 MVEILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVL 423
           M + LFED F +TR+DPDGKKFD+VSR+EARSEQ DMYMQLDV T++YP+H GEKF MV+
Sbjct: 1   MSDHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 424 APTLSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEE-GSGINVKVEIYASFGGLL 600
           APTL+LDGTPDTGYYTQ  RK+LAD +EYVM GKLYK+SE+  S  N KVE+YASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 601 MMLKGDPSNAANFELDQRLFLLMRKV 678
           M+L+GDPS AA+FELDQRLFLL+RKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
           gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like [Citrus
           sinensis] gi|557545143|gb|ESR56121.1| hypothetical
           protein CICLE_v10022723mg [Citrus clementina]
          Length = 146

 Score =  223 bits (567), Expect = 6e-56
 Identities = 104/142 (73%), Positives = 125/142 (88%)
 Frame = +1

Query: 253 ILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVLAPT 432
           +LFEDIF + +IDPDGKKFDKVSRIEA S+  DMYM LDVN+E+YP+ VG+KFTM LA T
Sbjct: 5   VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64

Query: 433 LSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLMMLK 612
           L+LDGTPDTGYYT G RK+LADK+EY+MHGKL+K+ +EGSG ++K EIY S+GGLLMMLK
Sbjct: 65  LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLK 124

Query: 613 GDPSNAANFELDQRLFLLMRKV 678
           GDPS  ++FELDQRLFLLMRK+
Sbjct: 125 GDPSYVSHFELDQRLFLLMRKL 146


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  221 bits (563), Expect = 2e-55
 Identities = 104/142 (73%), Positives = 126/142 (88%)
 Frame = +1

Query: 253 ILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVLAPT 432
           +LFEDIF + ++DPDGKKFDKVSRIEA S+  DM+M LDVNTEIYP+ VG+KFTM LA T
Sbjct: 5   VLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHT 64

Query: 433 LSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLMMLK 612
           L+LDGTPDTGYYTQG RK+LADK+EY+M+GKLYK+SEEGSG  VK E+  S+GGLLM+L+
Sbjct: 65  LNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKAEMLVSYGGLLMLLR 124

Query: 613 GDPSNAANFELDQRLFLLMRKV 678
           GDPS+ ++FELDQRLFLLMRK+
Sbjct: 125 GDPSHVSHFELDQRLFLLMRKL 146


>ref|XP_007022260.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
           gi|508721888|gb|EOY13785.1| RNA polymerase Rpb8 isoform
           1 [Theobroma cacao]
          Length = 145

 Score =  218 bits (555), Expect = 2e-54
 Identities = 104/142 (73%), Positives = 125/142 (88%)
 Frame = +1

Query: 253 ILFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGEKFTMVLAPT 432
           I FEDIF + ++DPDGKKFDKV+RIEARS+  DM+M LDVN+EIYP+HVG+KFTM LA T
Sbjct: 5   IFFEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHT 64

Query: 433 LSLDGTPDTGYYTQGQRKSLADKFEYVMHGKLYKLSEEGSGINVKVEIYASFGGLLMMLK 612
           L+LDGTPDTGYYT G RKSLADK+EYVMHGKLYK+S++GSG  +K EIY S+GGLLMML+
Sbjct: 65  LNLDGTPDTGYYTPG-RKSLADKYEYVMHGKLYKVSDDGSGKGLKAEIYVSYGGLLMMLR 123

Query: 613 GDPSNAANFELDQRLFLLMRKV 678
           G+ S+ + FELDQRLFLLMRK+
Sbjct: 124 GEASHVSQFELDQRLFLLMRKL 145