BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00002944
         (230 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       79   9e-13
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...    77   3e-12
ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu...    75   1e-11
ref|XP_006388172.1| hypothetical protein POPTR_0303s002202g, par...    75   1e-11
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       74   2e-11
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    74   2e-11
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    74   2e-11
ref|XP_002311535.2| hypothetical protein POPTR_0008s13520g [Popu...    73   5e-11
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               72   8e-11
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    72   8e-11
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...    72   1e-10
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]        71   1e-10
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...    70   3e-10
ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prun...    70   3e-10
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...    70   3e-10
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    69   7e-10
gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]        67   2e-09
gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]        67   3e-09
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    67   3e-09
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme...    67   3e-09

>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 78.6 bits (192), Expect = 9e-13
 Identities = 36/58 (62%), Positives = 42/58 (72%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEG 8
           P L+YFKD  +DQWVR  DFT S CIGQSS +CLELP   +  P  R+NF YYKE+EG
Sbjct: 193 PLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQL-PNFRENFAYYKENEG 249


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 36/60 (60%), Positives = 41/60 (68%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P L+YF D  +DQWVR  DFT S CIGQSS +CLELP   +  P  R+NF YYKE EG F
Sbjct: 193 PLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQL-PNFRENFAYYKESEGKF 251


>ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
           gi|550329580|gb|EEF02020.2| hypothetical protein
           POPTR_0010s11560g [Populus trichocarpa]
          Length = 1119

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = -2

Query: 175 LDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           L  FK+A +DQWVR +DF+ SYCIGQSS++CLELP   +  P  ++NF  YKEDEG F
Sbjct: 191 LSNFKEATDDQWVRDVDFSPSYCIGQSSALCLELPPNSQL-PNFQENFVCYKEDEGHF 247


>ref|XP_006388172.1| hypothetical protein POPTR_0303s002202g, partial [Populus
           trichocarpa] gi|550309640|gb|ERP47086.1| hypothetical
           protein POPTR_0303s002202g, partial [Populus
           trichocarpa]
          Length = 224

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = -2

Query: 175 LDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           L  FK+A +DQW+R +DF+ SYCIGQSS++CLELP   +  P  ++NF  YKEDEG F
Sbjct: 15  LSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQL-PNFQENFVCYKEDEGHF 71


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEG 8
           P L+YFKD  +DQWVR  DFT S CIGQSS + LELP   +  P  R+NF YYKE+EG
Sbjct: 193 PLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQL-PNFRENFAYYKENEG 249


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
           arietinum]
          Length = 1100

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
 Frame = -2

Query: 193 TNGY--PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYK 20
           TN Y  P  +YFK++ +DQW+RA+DFT   CIGQSS+ICLELP   +F P IR+ F +Y+
Sbjct: 195 TNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF-PNIREYFVHYQ 253

Query: 19  EDEGPF 2
           E+EG +
Sbjct: 254 ENEGQY 259


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
           arietinum]
          Length = 1126

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
 Frame = -2

Query: 193 TNGY--PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYK 20
           TN Y  P  +YFK++ +DQW+RA+DFT   CIGQSS+ICLELP   +F P IR+ F +Y+
Sbjct: 195 TNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF-PNIREYFVHYQ 253

Query: 19  EDEGPF 2
           E+EG +
Sbjct: 254 ENEGQY 259


>ref|XP_002311535.2| hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
           gi|550332995|gb|EEE88902.2| hypothetical protein
           POPTR_0008s13520g [Populus trichocarpa]
          Length = 1139

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
 Frame = -2

Query: 214 LELPQGQTNGYPTLDYF------KDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFP 53
           L  P+GQ   +  +         K   +DQWVR +DF+ SYCIGQSS++CLELP++ +  
Sbjct: 188 LHRPRGQAKKFLIVQMLGAAKILKKDTDDQWVRDVDFSPSYCIGQSSALCLELPRSGQL- 246

Query: 52  PQIRDNFPYYKEDEGPF 2
           P  ++NFP YKEDEG F
Sbjct: 247 PNFQENFPCYKEDEGRF 263


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = -2

Query: 214 LELPQGQTNGYPTLDY-FKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRD 38
           L  PQ      P L Y FK+A +DQWVR IDFT S  IGQS ++CLELP   +  P  R+
Sbjct: 138 LGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL-PNFRE 196

Query: 37  NFPYYKEDEGPF 2
           NF YYKE++G F
Sbjct: 197 NFAYYKENDGKF 208


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = -2

Query: 214 LELPQGQTNGYPTLDY-FKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRD 38
           L  PQ      P L Y FK+A +DQWVR IDFT S  IGQS ++CLELP   +  P  R+
Sbjct: 174 LGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL-PNFRE 232

Query: 37  NFPYYKEDEGPF 2
           NF YYKE++G F
Sbjct: 233 NFAYYKENDGKF 244


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 35/66 (53%), Positives = 45/66 (68%)
 Frame = -2

Query: 199 GQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYK 20
           GQ    P L++FK+A +DQWVR  DFT+S  IGQSSS+CL+LP   + PP  + NF YY+
Sbjct: 188 GQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP-FKQNFAYYE 246

Query: 19  EDEGPF 2
           E E  F
Sbjct: 247 EFEHEF 252


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P  +YFKD  +DQWVRA DFT S CIG SS++ LELP   +  P +R+NF YYKE E  F
Sbjct: 194 PLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDL-PDLRENFVYYKESEERF 252


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
           gi|548853371|gb|ERN11375.1| hypothetical protein
           AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 34/60 (56%), Positives = 41/60 (68%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P  +Y+KD  ++QWVR+IDFT S  IGQSSS+CL LP      P IR+NF YYKE  G F
Sbjct: 270 PLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI-PNIRENFAYYKEIGGAF 328


>ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prunus persica]
           gi|462422352|gb|EMJ26615.1| hypothetical protein
           PRUPE_ppa000562mg [Prunus persica]
          Length = 1095

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 36/73 (49%), Positives = 48/73 (65%)
 Frame = -2

Query: 226 SSICLELPQGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 47
           S I L  P+GQ   +  +   + A  + WVR +DFT S CIGQSS++CLELP TCE  P 
Sbjct: 155 SQIELHHPRGQLTKFLLI---QKASQNGWVREVDFTPSRCIGQSSAVCLELPPTCEL-PN 210

Query: 46  IRDNFPYYKEDEG 8
           +R +F +YKE+EG
Sbjct: 211 LRKSFAHYKENEG 223


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 33/60 (55%), Positives = 41/60 (68%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P L+YF+D  ++QWVR  DFT S  IG SSS+CLELP   +  P   +NF YYKE+EG F
Sbjct: 194 PLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQL-PNFNENFFYYKENEGTF 252


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDE 11
           P  ++FKDA ++QW+RAIDFT    IGQSS+ICLELP   +  P  R+NF YY+E E
Sbjct: 197 PLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL-PNFRENFAYYEESE 252


>gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
          Length = 933

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/60 (53%), Positives = 40/60 (66%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P  ++F+D  ++QW R IDFT S  IGQSS +CLE+PQ CE  P+I D F YYKE    F
Sbjct: 25  PFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCEL-PRIGDYFVYYKEQNLDF 83


>gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 885

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = -2

Query: 175 LDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           ++YFK+  +  W R +DFT + CIGQSS++CLE+P   +  P +RD F YYKEDEG F
Sbjct: 1   MNYFKEVPDKCWERDVDFTPACCIGQSSALCLEIPNWRQL-PNLRDCFVYYKEDEGQF 57


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 30/60 (50%), Positives = 39/60 (65%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKEDEGPF 2
           P  ++FK+  +DQWVR  DFT S  IGQS+ +C+ELP   E  P  ++NF YYKE E  F
Sbjct: 196 PVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL-PDFKENFAYYKESEDRF 254


>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
           italica]
          Length = 1123

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = -2

Query: 181 PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQIRDNFPYYKE 17
           P  ++F+D  ++QW R IDFT S  IGQSS +CLE+PQ CE  P I D F YYKE
Sbjct: 199 PFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCEL-PNIADYFVYYKE 252