BLASTX nr result
ID: Cocculus22_contig00002940
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00002940
(3661 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_740689.1| ribosomal protein S3 [Nandina domestica] gi|122... 401 e-108
gb|ADD29944.1| ribosomal protein S3 [Heuchera sanguinea] 398 e-108
ref|YP_008081404.1| ribosomal protein S3 (chloroplast) [Tetracen... 398 e-107
gb|ADD29929.1| ribosomal protein S3 [Ehretia acuminata] 398 e-107
gb|ADD29938.1| ribosomal protein S3 [Berberidopsis corallina] 397 e-107
gb|ADD29932.1| ribosomal protein S3 [Meliosma aff. cuneifolia Mo... 397 e-107
ref|YP_002836129.1| ribosomal protein S3 [Megaleranthis saniculi... 395 e-107
gb|ADD29927.1| ribosomal protein S3 [Aucuba japonica] 395 e-106
gb|EMS67832.1| 50S ribosomal protein L2, chloroplastic [Triticum... 279 e-106
ref|YP_001294223.1| ribosomal protein S3 [Buxus microphylla] gi|... 394 e-106
ref|YP_008815976.1| ribosomal protein S3 (chloroplast) [Lindenbe... 394 e-106
ref|YP_004891646.1| rps3 gene product (chloroplast) [Nicotiana u... 394 e-106
gb|ADD29940.1| ribosomal protein S3 [Cornus florida] 394 e-106
gb|EMS63307.1| 50S ribosomal protein L2, chloroplastic [Triticum... 278 e-106
ref|YP_008815156.1| ribosomal protein S3 (chloroplast) [Scheffle... 393 e-106
ref|NP_783269.1| ribosomal protein S3 [Atropa belladonna] gi|277... 393 e-106
ref|YP_004935705.1| rps3 gene product (chloroplast) [Sesamum ind... 393 e-106
ref|YP_004935591.1| ribosomal protein S3 (chloroplast) [Eleuther... 393 e-106
gb|ADD29930.1| ribosomal protein S3 [Ilex cornuta] 393 e-106
ref|YP_008963517.1| ribosomal protein S3 (chloroplast) [Penthoru... 392 e-106
>ref|YP_740689.1| ribosomal protein S3 [Nandina domestica]
gi|122165923|sp|Q09FS2.1|RR3_NANDO RecName: Full=30S
ribosomal protein S3, chloroplastic
gi|114054510|gb|ABI49903.1| ribosomal protein S3
[Nandina domestica]
Length = 218
Score = 401 bits (1031), Expect = e-108
Identities = 201/216 (93%), Positives = 208/216 (96%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQSHHS+WFAQPKNYSEGLQEDQKIQDCI+ YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQSHHSLWFAQPKNYSEGLQEDQKIQDCIRNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE R RGIEELQS+V+KR N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRSRGIEELQSSVQKRFNSVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKA+KKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 HPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218
>gb|ADD29944.1| ribosomal protein S3 [Heuchera sanguinea]
Length = 217
Score = 398 bits (1023), Expect = e-108
Identities = 198/214 (92%), Positives = 205/214 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQKI+DCIK YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDCIKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE RPR IE+LQ NV+K LN+VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRPRRIEDLQMNVQKELNYVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAD 158
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVD 216
>ref|YP_008081404.1| ribosomal protein S3 (chloroplast) [Tetracentron sinense]
gi|511348504|ref|YP_008081432.1| ribosomal protein S3
(chloroplast) [Tetracentron sinense]
gi|511348570|ref|YP_008081496.1| ribosomal protein S3
(chloroplast) [Trochodendron aralioides]
gi|511348597|ref|YP_008081523.1| ribosomal protein S3
(chloroplast) [Trochodendron aralioides]
gi|290487132|gb|ADD29950.1| ribosomal protein S3
[Trochodendron aralioides] gi|479279242|gb|AGJ72096.1|
ribosomal protein S3 (chloroplast) [Tetracentron
sinense] gi|479279269|gb|AGJ72123.1| ribosomal protein
S3 (chloroplast) [Tetracentron sinense]
gi|479279335|gb|AGJ72188.1| ribosomal protein S3
(chloroplast) [Trochodendron aralioides]
gi|479279362|gb|AGJ72215.1| ribosomal protein S3
(chloroplast) [Trochodendron aralioides]
Length = 218
Score = 398 bits (1022), Expect = e-107
Identities = 199/216 (92%), Positives = 206/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPK+YSEGLQED+KI+DCIK YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKSYSEGLQEDKKIRDCIKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE RPRGIEELQ NV+K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRPRGIEELQINVQKDFNSVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
QPNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 QPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
>gb|ADD29929.1| ribosomal protein S3 [Ehretia acuminata]
Length = 218
Score = 398 bits (1022), Expect = e-107
Identities = 198/216 (91%), Positives = 207/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQKI+DCIK YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDCIKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRGIEELQ+N++K N V+RKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTNLQKEFNCVSRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218
>gb|ADD29938.1| ribosomal protein S3 [Berberidopsis corallina]
Length = 218
Score = 397 bits (1020), Expect = e-107
Identities = 198/216 (91%), Positives = 204/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQKI+DCIK YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDCIKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE RPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRPRGIEELQMNIQKEFNCVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 HPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTV TIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVGTIYGVLGIKIWIFIDEE 218
>gb|ADD29932.1| ribosomal protein S3 [Meliosma aff. cuneifolia Moore 333]
Length = 218
Score = 397 bits (1019), Expect = e-107
Identities = 197/216 (91%), Positives = 206/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHSVWFAQPK YSEGL+EDQKI+DCIK YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSVWFAQPKKYSEGLEEDQKIRDCIKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIY+GFPKLLIE RPRG+EELQ NV+K+ + VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYIGFPKLLIEGRPRGVEELQINVQKKFHSVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
QPNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 QPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
>ref|YP_002836129.1| ribosomal protein S3 [Megaleranthis saniculifolia]
gi|226933921|gb|ACO92054.1| ribosomal protein S3
[Megaleranthis saniculifolia]
Length = 218
Score = 395 bits (1016), Expect = e-107
Identities = 197/216 (91%), Positives = 207/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQSHHSVWF+QPK+YSEGLQEDQKIQ+CIK YVQKNM+ISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQSHHSVWFSQPKSYSEGLQEDQKIQNCIKNYVQKNMKISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
I+IQKRIDLIQVIIYMGFPKLLIE PRGIEELQ NV+K LN V RKLNIA+TR++KPYG
Sbjct: 63 IKIQKRIDLIQVIIYMGFPKLLIEGSPRGIEELQINVQKELNSVTRKLNIAITRVSKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
QPNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 QPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218
>gb|ADD29927.1| ribosomal protein S3 [Aucuba japonica]
Length = 218
Score = 395 bits (1014), Expect = e-106
Identities = 195/216 (90%), Positives = 205/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQK++DCIK YVQKNM+I SGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKLRDCIKNYVQKNMKIPSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMNLQKEFNCVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQ+QIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDQE 218
>gb|EMS67832.1| 50S ribosomal protein L2, chloroplastic [Triticum urartu]
Length = 257
Score = 279 bits (714), Expect(3) = e-106
Identities = 134/149 (89%), Positives = 144/149 (96%)
Frame = -3
Query: 2192 DQK*ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI 2013
++K ESTSTDMPLGTA+HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+
Sbjct: 15 ERKEESTSTDMPLGTAMHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLV 74
Query: 2012 SKNCSATVGQVGNIGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 1833
S+NC ATVGQVGN+GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG+APIGRK
Sbjct: 75 SQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRK 134
Query: 1832 KPTTPWGYPALGRRSRKRNKYSDSLILRR 1746
KPTTPWGYPALGRR+RKR KYSDS ILRR
Sbjct: 135 KPTTPWGYPALGRRTRKRKKYSDSFILRR 163
Score = 127 bits (319), Expect(3) = e-106
Identities = 63/93 (67%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Frame = -2
Query: 1656 VTRSLKKNPFVANHLLEKMEKLNMRAEKEIIITWSRASTIIPTMIGHTIAIHNGKTHLPI 1477
VTR K NPFVA+HLL K+EK+NM+ EKE I+TWSRAS+I+PTM+GHTIAIHNGK H+PI
Sbjct: 165 VTRK-KTNPFVAHHLLAKIEKVNMKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPI 223
Query: 1476 YITDRMVGHKLGEFAPTLNFRGH--ARNDSGSR 1384
YIT+ MVG KLGEF PT +F + AR D+ SR
Sbjct: 224 YITNPMVGRKLGEFVPTRHFTSYENARKDTKSR 256
Score = 32.3 bits (72), Expect(3) = e-106
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 2236 MLWKKLVQFGKGF 2198
MLWKKLVQFGKGF
Sbjct: 1 MLWKKLVQFGKGF 13
>ref|YP_001294223.1| ribosomal protein S3 [Buxus microphylla]
gi|172048683|sp|A6MM75.1|RR3_BUXMI RecName: Full=30S
ribosomal protein S3, chloroplastic
gi|146762323|gb|ABQ45287.1| ribosomal protein S3 [Buxus
microphylla]
Length = 218
Score = 394 bits (1013), Expect = e-106
Identities = 196/216 (90%), Positives = 204/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPK+YSEGLQEDQKI+DCIK YVQKNMRISSG EGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKSYSEGLQEDQKIRDCIKNYVQKNMRISSGAEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE RPRG+EELQ NV+K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRPRGVEELQINVQKEFNSVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
QPNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQ+QIAGRIDGKEIARVEWIREG
Sbjct: 123 QPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKI YCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIYYCSYTVRTIYGVLGIKIWIFVDEE 218
>ref|YP_008815976.1| ribosomal protein S3 (chloroplast) [Lindenbergia philippensis]
gi|557136903|emb|CDI43957.1| ribosomal protein S3
(chloroplast) [Lindenbergia philippensis]
Length = 220
Score = 394 bits (1012), Expect = e-106
Identities = 196/216 (90%), Positives = 206/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQSHHS+WFAQPKNYSEGLQEDQKI+D IKTYVQKNMRISSG EGIAR
Sbjct: 3 QKINPLGFRLGTTQSHHSLWFAQPKNYSEGLQEDQKIRDFIKTYVQKNMRISSGAEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRGIEELQ N++K ++VNRKLNIA+TRI KPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMNLQKEFHYVNRKLNIAITRITKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQI+GRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQISGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDKE 218
>ref|YP_004891646.1| rps3 gene product (chloroplast) [Nicotiana undulata]
gi|347453949|gb|AEO95607.1| ribosomal protein S3
(chloroplast) [Nicotiana undulata]
gi|347454060|gb|AEO95717.1| ribosomal protein S3
[synthetic construct]
Length = 218
Score = 394 bits (1011), Expect = e-106
Identities = 195/216 (90%), Positives = 205/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WF+QPKNYSEGLQEDQKI+DCIK YVQKNMR SSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRGIEELQ+ ++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQ+QIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218
>gb|ADD29940.1| ribosomal protein S3 [Cornus florida]
Length = 218
Score = 394 bits (1011), Expect = e-106
Identities = 195/216 (90%), Positives = 203/216 (93%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLG TQ HHS+WFAQPKNYSEGLQEDQKI+DC+K YVQKNMRISSGVEGIAR
Sbjct: 3 QKINPLGFRLGITQGHHSLWFAQPKNYSEGLQEDQKIRDCVKNYVQKNMRISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQVNLQKEFNCVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQ DTKGIQVQIAGRIDGKEIARVEW+REG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQEDTKGIQVQIAGRIDGKEIARVEWVREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYT RTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTARTIYGVLGIKIWIFIDEE 218
>gb|EMS63307.1| 50S ribosomal protein L2, chloroplastic [Triticum urartu]
Length = 257
Score = 278 bits (711), Expect(3) = e-106
Identities = 133/149 (89%), Positives = 144/149 (96%)
Frame = -3
Query: 2192 DQK*ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI 2013
++K ESTSTDMPLGTA+HNIEIT G+GGQLARAAGAVAKLIAKEGK+ATL+LPSGEVRL+
Sbjct: 15 ERKEESTSTDMPLGTAMHNIEITRGRGGQLARAAGAVAKLIAKEGKAATLRLPSGEVRLV 74
Query: 2012 SKNCSATVGQVGNIGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 1833
S+NC ATVGQVGN+GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG+APIGRK
Sbjct: 75 SQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRK 134
Query: 1832 KPTTPWGYPALGRRSRKRNKYSDSLILRR 1746
KPTTPWGYPALGRR+RKR KYSDS ILRR
Sbjct: 135 KPTTPWGYPALGRRTRKRKKYSDSFILRR 163
Score = 127 bits (319), Expect(3) = e-106
Identities = 63/93 (67%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Frame = -2
Query: 1656 VTRSLKKNPFVANHLLEKMEKLNMRAEKEIIITWSRASTIIPTMIGHTIAIHNGKTHLPI 1477
VTR K NPFVA+HLL K+EK+NM+ EKE I+TWSRAS+I+PTM+GHTIAIHNGK H+PI
Sbjct: 165 VTRK-KTNPFVAHHLLAKIEKVNMKEEKETIVTWSRASSILPTMVGHTIAIHNGKEHIPI 223
Query: 1476 YITDRMVGHKLGEFAPTLNFRGH--ARNDSGSR 1384
YIT+ MVG KLGEF PT +F + AR D+ SR
Sbjct: 224 YITNPMVGRKLGEFVPTRHFTSYENARKDTKSR 256
Score = 32.3 bits (72), Expect(3) = e-106
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1
Query: 2236 MLWKKLVQFGKGF 2198
MLWKKLVQFGKGF
Sbjct: 1 MLWKKLVQFGKGF 13
>ref|YP_008815156.1| ribosomal protein S3 (chloroplast) [Schefflera delavayi]
gi|458599562|gb|AGG39255.1| ribosomal protein S3
(chloroplast) [Schefflera delavayi]
Length = 219
Score = 393 bits (1010), Expect = e-106
Identities = 197/216 (91%), Positives = 204/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQKI+D IK YVQKNM+ISS VEGIAR
Sbjct: 3 QKINPLGFRLGTTQDHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSSVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNLQKEFNCVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 SPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDGE 218
>ref|NP_783269.1| ribosomal protein S3 [Atropa belladonna]
gi|27734482|sp|Q8S8V5.1|RR3_ATRBE RecName: Full=30S
ribosomal protein S3, chloroplastic
gi|20068369|emb|CAC88082.1| ribosomal protein S3 [Atropa
belladonna]
Length = 218
Score = 393 bits (1010), Expect = e-106
Identities = 195/216 (90%), Positives = 205/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WF+QPKNYSEGLQEDQKI+DCIK YVQKNMR SSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRGIEELQ ++K LN VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKELNCVNRKLNIAVTRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQ+QIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYC+YTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFLDEE 218
>ref|YP_004935705.1| rps3 gene product (chloroplast) [Sesamum indicum]
gi|347448334|gb|AEO92745.1| ribosomal protein S3
(chloroplast) [Sesamum indicum]
gi|496538640|gb|AGL45375.1| ribosomal protein S3
(chloroplast) [Sesamum indicum]
Length = 220
Score = 393 bits (1010), Expect = e-106
Identities = 195/216 (90%), Positives = 206/216 (95%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQSHHS+WFAQPKNYSEGLQEDQKI+D IK YVQKNM+ISSG EGIAR
Sbjct: 3 QKINPLGFRLGTTQSHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSGAEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVII+MGFPKLLIESRPRG+EELQ N++K ++VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIFMGFPKLLIESRPRGVEELQMNLQKEFHYVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDKE 218
>ref|YP_004935591.1| ribosomal protein S3 (chloroplast) [Eleutherococcus senticosus]
gi|558602950|ref|YP_008814982.1| ribosomal protein S3
(chloroplast) [Brassaiopsis hainla]
gi|558603038|ref|YP_008815069.1| ribosomal protein S3
(chloroplast) [Metapanax delavayi]
gi|563940423|ref|YP_008815243.1| ribosomal protein S3
(chloroplast) [Kalopanax septemlobus]
gi|347448246|gb|AEO92658.1| ribosomal protein S3
(chloroplast) [Eleutherococcus senticosus]
gi|458599230|gb|AGG39081.1| ribosomal protein S3
(chloroplast) [Brassaiopsis hainla]
gi|458599409|gb|AGG39168.1| ribosomal protein S3
(chloroplast) [Metapanax delavayi]
gi|458599650|gb|AGG39342.1| ribosomal protein S3
(chloroplast) [Kalopanax septemlobus]
Length = 219
Score = 393 bits (1010), Expect = e-106
Identities = 197/216 (91%), Positives = 204/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQEDQKI+D IK YVQKNM+ISS VEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSSVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNLQKEFNCVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 SPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDGE 218
>gb|ADD29930.1| ribosomal protein S3 [Ilex cornuta]
Length = 218
Score = 393 bits (1009), Expect = e-106
Identities = 196/216 (90%), Positives = 203/216 (93%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFA PKNYSEGLQEDQKI+DCIK YVQKN +ISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAPPKNYSEGLQEDQKIRDCIKNYVQKNSKISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPK LIESRPRGIEELQ N++K N VNRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKFLIESRPRGIEELQMNLQKEFNGVNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQVQIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218
>ref|YP_008963517.1| ribosomal protein S3 (chloroplast) [Penthorum chinense]
gi|403226818|gb|AFR25697.1| ribosomal protein S3
(chloroplast) [Penthorum chinense]
Length = 218
Score = 392 bits (1007), Expect = e-106
Identities = 195/216 (90%), Positives = 204/216 (94%)
Frame = -1
Query: 799 QKINPLGFRLGTTQSHHSVWFAQPKNYSEGLQEDQKIQDCIKTYVQKNMRISSGVEGIAR 620
QKINPLGFRLGTTQ HHS+WFAQPKNYSEGLQED+KI+DCIK YVQKNM+ISSGVEGIAR
Sbjct: 3 QKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDKKIRDCIKNYVQKNMKISSGVEGIAR 62
Query: 619 IEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQSNVKKRLNFVNRKLNIALTRIAKPYG 440
IEIQKRIDLIQVIIYMGFPKLLIE RPR +EELQ NV+K LN NRKLNIA+TRIAKPYG
Sbjct: 63 IEIQKRIDLIQVIIYMGFPKLLIEGRPRKVEELQMNVQKELNGGNRKLNIAITRIAKPYG 122
Query: 439 QPNILAEFIAGQLKNRVSFRKAMKKAIELSEQADTKGIQVQIAGRIDGKEIARVEWIREG 260
PNILAEFIAGQLKNRVSFRKAMKKAIEL+EQADTKGIQ+QIAGRIDGKEIARVEWIREG
Sbjct: 123 NPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREG 182
Query: 259 RVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFADAE 152
RVPLQTIRAKIDYCSYTVRTIYG LGIKIWIF D E
Sbjct: 183 RVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218