BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00002829
         (1163 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              188   5e-96
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              187   1e-95
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              190   2e-95
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              190   3e-95
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  189   9e-95
gb|AFB73912.1| polyprotein [Citrus sinensis]                          189   3e-93
gb|AFB73911.1| polyprotein [Citrus sinensis]                          185   5e-90
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             175   4e-86
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           135   9e-55
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      134   2e-53
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   130   5e-52
emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]   123   2e-48
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            113   3e-48
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           123   4e-48
emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera]   120   4e-48
emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera]   121   4e-48
emb|CAN74702.1| hypothetical protein VITISV_023139 [Vitis vinifera]   121   4e-48
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   123   6e-48
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   120   6e-48
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   122   1e-47

>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  188 bits (478), Expect(3) = 5e-96
 Identities = 101/165 (61%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS+FM + G E WN +KRI+R I G   +        L  RGYVDS   
Sbjct: 1102 TRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFA 1161

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
                K KSTTGYVF L GG VS  +KLQ +VA ST EAE M ATQACKE IW +R+MEEL
Sbjct: 1162 GDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL 1221

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQE+I+  CDSQS LHIARNPAFHSR KHIGV+YH V+EVVEE
Sbjct: 1222 GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266



 Score =  186 bits (472), Expect(3) = 5e-96
 Identities = 95/157 (60%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGS----KPQQ 168
            LYG  Q  +C+YKRFDS+I  L YN+L+SDHCTYYKRFDG+  ++   +V       P +
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNK 996

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD K RKIWLSQ+NYL K+LR FNMQDCK
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCK 1056

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            PI T  PVNFKLSS M PS EAERMEMSRVPYAS VG
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVG 1093



 Score = 26.6 bits (57), Expect(3) = 5e-96
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRSS+GL  T
Sbjct: 1291 DKFVWCRSSYGLLET 1305


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  187 bits (474), Expect(3) = 1e-95
 Identities = 101/165 (61%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS+FM + G E WN +KRI+R I G   +        L   GYVDS   
Sbjct: 1102 TRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVWGYVDSDFA 1161

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
                K KSTTGYVF LAGG VS  +KLQ +VA ST EAE M ATQACKE IW +R+MEEL
Sbjct: 1162 GDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL 1221

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQE+I+  CDSQS LHIARNPAFHSR KHIGV+YH V+EVVEE
Sbjct: 1222 GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266



 Score =  186 bits (473), Expect(3) = 1e-95
 Identities = 95/157 (60%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I  L YN+L+SDHCTYYKRFDG+  ++   +V       P +
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD K RKIWLSQ+NYL K+LR FNMQDCK
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCK 1056

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            PI T  PVNFKLSS M PS EAERMEMSRVPYAS VG
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVG 1093



 Score = 26.6 bits (57), Expect(3) = 1e-95
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRSS+GL  T
Sbjct: 1291 DKFVWCRSSYGLLET 1305


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  190 bits (482), Expect(3) = 2e-95
 Identities = 102/165 (61%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS+FM + G E WN +KRI+R I G   +        L  RGYVDS   
Sbjct: 1102 TRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFA 1161

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
                K KSTTGYVF LAGG VS  +KLQ +VA ST EAE M ATQACKE IW +R+MEEL
Sbjct: 1162 GDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL 1221

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQE+I+  CDSQS LHIARNPAFHSR KHIGV+YH V+EVVEE
Sbjct: 1222 GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266



 Score =  182 bits (462), Expect(3) = 2e-95
 Identities = 93/157 (59%), Positives = 106/157 (67%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I  L Y++L+SDHCTYYKRFDG+  ++   +V       P +
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD K  KIWLSQ+NYL K+LR FNMQDCK
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQDCK 1056

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            PI T  PVNFKLSS M PS EAERMEMSRVPYAS VG
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVG 1093



 Score = 26.6 bits (57), Expect(3) = 2e-95
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRSS+GL  T
Sbjct: 1291 DKFVWCRSSYGLLET 1305


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  190 bits (482), Expect(3) = 3e-95
 Identities = 102/165 (61%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS+FM + G E WN +KRI+R I G   +        L  RGYVDS   
Sbjct: 1102 TRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFA 1161

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
                K KSTTGYVF LAGG VS  +KLQ +VA ST EAE M ATQACKE IW +R+MEEL
Sbjct: 1162 GDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEEL 1221

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQE+I+  CDSQS LHIARNPAFHSR KHIGV+YH V+EVVEE
Sbjct: 1222 GHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266



 Score =  184 bits (468), Expect(3) = 3e-95
 Identities = 94/157 (59%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I  L Y++L+SDHCTYYKRFDG+  ++   +V       P +
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD K RKIWLSQ+NYL K+LR FNMQDCK
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCK 1056

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            PI T  PVNFKLSS M PS EAERMEMSRVPYAS VG
Sbjct: 1057 PISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVG 1093



 Score = 23.9 bits (50), Expect(3) = 3e-95
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRS +GL  T
Sbjct: 1291 DKFIWCRSLYGLLET 1305


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  189 bits (479), Expect(3) = 9e-95
 Identities = 101/165 (61%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS+FM + G E WN +KRILR I G               RGYVDS   
Sbjct: 1102 TRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFTIRGYVDSDFA 1161

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              L K KSTTGYVF LAGG VS  +KLQ +VA ST EAE M ATQACKE IW++R++EEL
Sbjct: 1162 GDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEEL 1221

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQ+KI+  CDS S LHIARNPAFHSR KHIGV+YH V+EVVEE
Sbjct: 1222 GHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266



 Score =  182 bits (461), Expect(3) = 9e-95
 Identities = 93/157 (59%), Positives = 106/157 (67%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I  LGYN+L+SDHCTYYKRFD    ++   +V       P +
Sbjct: 937  LYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNK 996

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD K RKIWLSQ+NYL+K+LR FNMQD  
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQDYN 1056

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            PI T  PVN+KLSSSM PS EAERMEMSRVPYAS VG
Sbjct: 1057 PISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVG 1093



 Score = 26.2 bits (56), Expect(3) = 9e-95
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRSS+GL  T
Sbjct: 1291 DKFIWCRSSYGLLET 1305


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  189 bits (480), Expect(3) = 3e-93
 Identities = 101/165 (61%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+GAVS++M N GGE W  +KRILR I G   +           RGYVDS   
Sbjct: 1106 TRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSEFTVRGYVDSDFA 1165

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              L K KSTTGYVF LAG  VS  +KLQ +VA ST EAE M ATQACKE IW +R++EEL
Sbjct: 1166 GDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEEL 1225

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQ+KI   CDSQS LHIARNPAFHSR KHIGV+YH V+EVVE+
Sbjct: 1226 GHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVED 1270



 Score =  179 bits (454), Expect(3) = 3e-93
 Identities = 92/157 (58%), Positives = 105/157 (66%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I  LGYN+L+SDHC YYKRF+ +  ++   +V       P +
Sbjct: 941  LYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNK 1000

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD   RKIWLSQ+NYL+KILR FNMQDCK
Sbjct: 1001 DRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILRRFNMQDCK 1060

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             I T  PVNFKLSSSM PS EAER EMSRVPYAS VG
Sbjct: 1061 SISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097



 Score = 23.5 bits (49), Expect(3) = 3e-93
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  W RSS GLA T
Sbjct: 1295 DKFVWSRSSCGLAAT 1309


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  185 bits (470), Expect(3) = 5e-90
 Identities = 99/165 (60%), Positives = 116/165 (70%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS++M N GGE W  +KRILR I G   +           RGYVDS   
Sbjct: 1106 TRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSEFTVRGYVDSDFA 1165

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              L K KSTTGYVF LAG  VS  +KLQ +VA ST EAE M ATQACK+ IW +R++EEL
Sbjct: 1166 GDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEEL 1225

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             HKQ+KI   CDSQS LHIARNPAFHSR KHIGV+YH V+EVVE+
Sbjct: 1226 GHKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVED 1270



 Score =  173 bits (438), Expect(3) = 5e-90
 Identities = 90/157 (57%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  + +YKRFDS+I  LGYN+L+SDHC YYKRF+ +  ++   +V       P +
Sbjct: 941  LYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNK 1000

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD    KIWLSQ+NYL+KILR FNMQDCK
Sbjct: 1001 DRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQDCK 1060

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             I T  PVNFKLSSSM PS EAER EMSRVPYAS VG
Sbjct: 1061 SISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097



 Score = 22.7 bits (47), Expect(3) = 5e-90
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  W RSS GLA T
Sbjct: 1295 DKFVWSRSSCGLAET 1309


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  175 bits (443), Expect(3) = 4e-86
 Identities = 99/190 (52%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD AQA+G VS++M N G E WN +KRILR I G   +         +  GYVDS   
Sbjct: 1095 TRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFIINGYVDSDYA 1154

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              L K KSTTGYVF +AGG VS  +KLQ +VA ST EAE + ATQA KE IW + ++EEL
Sbjct: 1155 GDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEEL 1214

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEEVN---QPSRWQNEVR 1013
             HKQE +S  CDSQS LH+ARNPAFHSR KHI V+YH ++E V+E     Q     + V 
Sbjct: 1215 GHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVA 1274

Query: 1014 *FLTRLNGVD 1043
             FLT++  VD
Sbjct: 1275 DFLTKIINVD 1284



 Score =  168 bits (425), Expect(3) = 4e-86
 Identities = 87/157 (55%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  +C+YKRFDS+I CLGYN+LN+D C Y+KRF  D  V+   +V       P +
Sbjct: 930  LYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNK 989

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                              L PANKILGMQIHRD   RKIWLSQ+NYL+KIL  F+MQDCK
Sbjct: 990  DHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCK 1049

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             I T  P+N K+SSSM PS E  RMEMSRVPYAS VG
Sbjct: 1050 SISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVG 1086



 Score = 25.0 bits (53), Expect(3) = 4e-86
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 1022 DKIKWCRSSFGLAGT 1066
            DK  WCRSS GL  T
Sbjct: 1284 DKFTWCRSSCGLIET 1298


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  135 bits (341), Expect(2) = 9e-55
 Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A A+G VS+F+ N G E W+ +K ILR + G   L     +   +  GY D+ + 
Sbjct: 1126 TRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMA 1185

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   KST+GY+   +GG VS ++KLQ  VA ST EAE + AT+ACKE+IW ++ + EL
Sbjct: 1186 GDVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTEL 1245

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
               Q+     CDSQS +H+A+N +FHSR KHI V Y+ +++V+E+
Sbjct: 1246 GFSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEK 1290



 Score =  106 bits (264), Expect(2) = 9e-55
 Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVR----------GRHV 150
            LYG  Q  + +YK+F+S +   GY K  SDHC + ++F  D  ++           GR+V
Sbjct: 961  LYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNV 1020

Query: 151  G---SKPQQRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKIL 321
                S  +Q S                L PA +ILGM+I RD + +K+WLSQ  Y+EK+L
Sbjct: 1021 SRINSLKEQLSK---------FFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVL 1071

Query: 322  RHFNMQDCKPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            + FNM+  K +      +F+LS+   PS + ER +M R+PYAS VG
Sbjct: 1072 QRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVG 1117


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  134 bits (337), Expect(2) = 2e-53
 Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A  +G VS+FM N G E WN +K ILR + G   L            GY DS + 
Sbjct: 1069 TRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVGYTDSDMG 1128

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   +ST+GYV   AGG V+ +++LQ  VA ST EAE +  T+ACKE++W +++++EL
Sbjct: 1129 GDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQEL 1188

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVE 974
               Q+K    CDSQS +++ +N  FHSR KHI V YH +++ +E
Sbjct: 1189 SFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALE 1232



 Score =  103 bits (257), Expect(2) = 2e-53
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGS----KPQQ 168
            LYG  Q  + +YK+F+S +   GY K  SDHC + K+F  D  ++   +V          
Sbjct: 904  LYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDI 963

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                R             +  A +ILG++I RD + +K+WLSQ NY++++L+ F M++ K
Sbjct: 964  SMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAK 1023

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             + T    +FKLS+   PS E E+ +M R+PYAS VG
Sbjct: 1024 VVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVG 1060


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  130 bits (327), Expect(2) = 5e-52
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIK---RILRDIGPQMLHYVTEDQMLLSRGYVDSV 656
            ++PD A A+G VS+F+EN G E W  +K   R LR      L +   D +L  +GY D+ 
Sbjct: 1125 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPIL--KGYTDAD 1182

Query: 657  LQVILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIME 836
            +   +   KS+TGY+F  +GG +S ++KLQ  VA ST EAE + AT+  KE+IW +R ++
Sbjct: 1183 MAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQ 1242

Query: 837  ELEHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
            EL   Q++    CDSQS + +++N  +H+R KHI V YH ++E+V++
Sbjct: 1243 ELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDD 1289



 Score =  102 bits (254), Expect(2) = 5e-52
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
            LYG  Q  + +Y +FDS+++   Y K  SD C Y+KRF  +  ++   +V         +
Sbjct: 960  LYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDK 1019

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
                +             L PA +ILGM+I R+   RK+WLSQ  Y+E++L  FNM++ K
Sbjct: 1020 GLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAK 1079

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            P+ T    + KLS  M P+   E+  M++VPY+S VG
Sbjct: 1080 PVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVG 1116


>emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]
          Length = 809

 Score =  123 bits (309), Expect(2) = 2e-48
 Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
 Frame = +3

Query: 474  PWYLSKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVD 650
            P   ++PD A  IG VS+F+ N G   W  +K I+R + G   L    E    +   Y D
Sbjct: 600  PMVCTRPDIAYVIGVVSRFLSNPGRLHWEAVKWIMRYLQGTSKLKLTFESGKPVLVSYTD 659

Query: 651  SVLQVILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRI 830
            S +   +   + T GY+   +GG V  +++LQ  VA ST EAE + A +ACKE++W +R 
Sbjct: 660  SNMAGDVDNRRPTLGYLMTFSGGAVFWQSRLQKSVALSTTEAEYIAAAEACKELLWMKRF 719

Query: 831  MEELEHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
            + EL  KQ++    CD+QSV+H+++N  FH+R KHI V YH +++ + +
Sbjct: 720  IHELGFKQQRYVVYCDNQSVIHLSKNSIFHARSKHIDVRYHWMRDALND 768



 Score = 97.8 bits (242), Expect(2) = 2e-48
 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
 Frame = +1

Query: 1   LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVR----------GRHV 150
           LYG  Q  + +YK+F+S +   GY K  S+HC +  +F  D  V+           GR+V
Sbjct: 439 LYGLKQAPRQWYKKFESVMGEQGYKKTTSNHCVFVHKFSDDDFVILLLYVDDILIVGRNV 498

Query: 151 G--SKPQQRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILR 324
               K +++ S  F            L P  KILG++I RD   +K+++SQ  Y+EK+L 
Sbjct: 499 SRIDKLKKQLSKSFSMKD--------LGPVKKILGIRIERDRASKKLYMSQEQYIEKVLE 550

Query: 325 HFNMQDCKPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            FNM   K + +    +FKLS    PS + E+ +M RVPYAS VG
Sbjct: 551 RFNMSKAKVVNSPLASHFKLSRRHSPSIDKEKEDMRRVPYASAVG 595


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  113 bits (283), Expect(2) = 3e-48
 Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486 SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
           ++PD A A+G VS+++ N     W  +K ILR + G   L         +  G+ D+ + 
Sbjct: 485 TRPDIAHAVGLVSRYLANPSKVHWEAVKWILRYLRGTSNLSLCFGGGEPILEGFTDADMA 544

Query: 663 VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
             L   KST+GY+F  A G +S ++KLQ  VA ST E E + A +A KE++W +R ++EL
Sbjct: 545 GDLDNRKSTSGYLFKFARGAISWQSKLQKCVALSTTEVEYIAAVEASKEMLWLKRFLQEL 604

Query: 843 EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
             KQ +    CDS+S + +++N  +H+R KHI V YH ++ V++E
Sbjct: 605 GLKQSEYVVFCDSKSAMDLSKNIMYHARTKHIDVRYHWLRVVIKE 649



 Score =  106 bits (265), Expect(2) = 3e-48
 Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1   LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVRGRHVGSK----PQQ 168
           LYG  Q  + +Y +FDS++    Y +  +D C Y+++F     ++   +V          
Sbjct: 320 LYGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQDV 379

Query: 169 RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
               R             L PA +ILGM+I RD K  K+WLSQ NY+E++L  FNM++ K
Sbjct: 380 EMICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIERVLERFNMKNAK 439

Query: 349 PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
           P+ T    +FKLS    P+ E E+  MS +PY+SVVG
Sbjct: 440 PVNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSSVVG 476


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  123 bits (308), Expect(2) = 4e-48
 Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIK---RILRDIGPQMLHYVTEDQMLLSRGYVDSV 656
            S+PD + A+  VS++M N G E W  ++   R LR      L +   D+ L+  GYVDS 
Sbjct: 1133 SRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGLI--GYVDSD 1190

Query: 657  LQVILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIME 836
                L + +S TGYVF +    VS    LQ +VA ST EAE M   +ACKE+IW + +  
Sbjct: 1191 YAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYA 1250

Query: 837  ELEHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
            EL   +  IS  CDSQS +++ ++  FH R KHI ++YH V++V+EE
Sbjct: 1251 ELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEE 1297



 Score = 96.7 bits (239), Expect(2) = 4e-48
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGD----IAVVRGRHVGSKPQQ 168
            LYG  Q+ + + KRFDS++    + +   D C Y K  +G     +  V    + +K + 
Sbjct: 969  LYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKI 1028

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
              + +             L  A KILGM+I RD K   ++LSQ NY++K+L+ FNMQ+ K
Sbjct: 1029 EIT-KLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAK 1087

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             + T    +FKLS++  PS +AE   MSRVPY+S VG
Sbjct: 1088 AVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVG 1124


>emb|CAN69431.1| hypothetical protein VITISV_024659 [Vitis vinifera]
          Length = 1287

 Score =  120 bits (302), Expect(2) = 4e-48
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A A+G VS+FM   G + W  +K ILR + G            L  +GYVD+   
Sbjct: 1085 TRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFA 1144

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   KSTTG+VF L G  +S  + LQ IV  ST EAE + AT+A KE+IW    ++EL
Sbjct: 1145 GDIDSRKSTTGFVFTLGGTXISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 1204

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
              KQE      DSQS + +A+N AFHS+ KHI  +YH ++ +VE+
Sbjct: 1205 GKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1249



 Score = 99.0 bits (245), Expect(2) = 4e-48
 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDG---------DIAVVRGRHVG 153
            LYG  Q  + +YK+FD+ +  +G+ +  +DHC Y K FD          D  ++ G  + 
Sbjct: 915  LYGLKQAPRQWYKKFDNXMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIVGSDIE 974

Query: 154  SKPQQRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFN 333
                 +                 L  A +ILGM+I RD     + LSQ  Y++K+L  FN
Sbjct: 975  KINNLKKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFN 1034

Query: 334  MQDCKPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            M + KP+ T    +FKLS    P  E ER  MS+VPYAS +G
Sbjct: 1035 MNEAKPVXTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIG 1076


>emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera]
          Length = 1286

 Score =  121 bits (303), Expect(2) = 4e-48
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A A+G VS+FM   G + W  +K ILR + G            L  +GYVD+   
Sbjct: 1084 TRPDIAHAVGVVSRFMSRPGKQHWEVVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFA 1143

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   KSTTG+VF L G  +S  + LQ IV  ST EAE + AT+A KE+IW    ++EL
Sbjct: 1144 GDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 1203

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
              KQE      DSQS + +A+N AFHS+ KHI  +YH ++ +VE+
Sbjct: 1204 GKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1248



 Score = 98.6 bits (244), Expect(2) = 4e-48
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDG---------DIAVVRGRHVG 153
            LYG  Q  + +YK+FD+++  +G+ +  +DHC Y+K FD          D  ++ G  + 
Sbjct: 920  LYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSYIILLLYVDDMLIAGSDIE 979

Query: 154  --SKPQQRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRH 327
              +  +++ S +F            L  A +ILGM+I RD     + LSQ  Y++K+L  
Sbjct: 980  KINNLKKQLSKQFAMKD--------LGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSR 1031

Query: 328  FNMQDCKPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            FNM + KP+ T    +FKLS    P  E +R  MS+VPYAS +G
Sbjct: 1032 FNMNEAKPVSTPLGSHFKLSKEQSPKTEEKRDHMSKVPYASAIG 1075


>emb|CAN74702.1| hypothetical protein VITISV_023139 [Vitis vinifera]
          Length = 1222

 Score =  121 bits (303), Expect(2) = 4e-48
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A A+G VS+FM   G + W  +K ILR + G            L  +GYVD+   
Sbjct: 1020 TRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFA 1079

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   KSTTG+VF L G  +S  + LQ IV  ST EAE + AT+A KE+IW    ++EL
Sbjct: 1080 GDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 1139

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
              KQE      DSQS + +A+N AFHS+ KHI  +YH ++ +VE+
Sbjct: 1140 GKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1184



 Score = 98.6 bits (244), Expect(2) = 4e-48
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGDIAVVR-----GRHVGSKPQ 165
            LYG  Q  + +YK+FD+++  +G+ +  +DHC Y K FD    ++         VGS  +
Sbjct: 856  LYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIVGSDIE 915

Query: 166  QRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDC 345
            + ++ +             L  A +ILGM+I RD     + LSQ  Y++K+L  FNM + 
Sbjct: 916  KINNLK--KQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEA 973

Query: 346  KPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            KP+ T    +FKLS    P  E ER  MS+VPYAS +G
Sbjct: 974  KPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIG 1011


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  123 bits (309), Expect(2) = 6e-48
 Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIK---RILRDIGPQMLHYVTEDQMLLSRGYVDSV 656
            S+PD + A+  VS++M N G E W  ++   R LR      L +   D+ L+  GYVDS 
Sbjct: 1131 SRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLI--GYVDSD 1188

Query: 657  LQVILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIME 836
                L + +S TGYVF +    VS    LQ +VA ST EAE M   +ACKE+IW + +  
Sbjct: 1189 YAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYA 1248

Query: 837  ELEHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
            EL   +  IS  CDSQS +++ ++  FH R KHI ++YH V++V+EE
Sbjct: 1249 ELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEE 1295



 Score = 95.9 bits (237), Expect(2) = 6e-48
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGD----IAVVRGRHVGSKPQQ 168
            LYG  Q+ + + KRFDS++    + +   D C Y K  +G     +  V    + +K + 
Sbjct: 967  LYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKI 1026

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
              + +             L  A KILGM+I RD K   ++LSQ NY++K+L+ FNMQ+ K
Sbjct: 1027 EIT-KLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAK 1085

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             + T    +FKLS++  PS +AE   MSRVPY+S VG
Sbjct: 1086 AVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVG 1122


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  120 bits (302), Expect(2) = 6e-48
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 1/165 (0%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIKRILRDI-GPQMLHYVTEDQMLLSRGYVDSVLQ 662
            ++PD A A+G VS+FM   G + W  +K ILR + G            L  +GYVD+   
Sbjct: 1096 TRPDIAHAVGIVSRFMSRPGKQNWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFA 1155

Query: 663  VILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIMEEL 842
              +   KSTTG+VF L G  +S  + LQ IV  ST EAE + AT+A KE+IW    ++EL
Sbjct: 1156 GDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDEL 1215

Query: 843  EHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
              KQE      DSQS + +A+N AFHS+ KHI  +YH ++ +VE+
Sbjct: 1216 GKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVED 1260



 Score = 98.6 bits (244), Expect(2) = 6e-48
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDG---------DIAVVRGRHVG 153
            LYG  Q  + +YK+FD+++  +G+ +  +DHC Y K FD          D  ++ G  + 
Sbjct: 932  LYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIAGSDIE 991

Query: 154  --SKPQQRSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRH 327
              +  +++ S +F            L  A +ILGM+I RD     + LSQ  Y++K+L  
Sbjct: 992  KINNLKKQLSKQFAMKD--------LGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSR 1043

Query: 328  FNMQDCKPILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
            FNM + KP+ T    +FKLS    P  E ER  MS+VPYAS +G
Sbjct: 1044 FNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASTIG 1087


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  122 bits (306), Expect(2) = 1e-47
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
 Frame = +3

Query: 486  SKPDFAQAIGAVSQFMENLGGEQWNTIK---RILRDIGPQMLHYVTEDQMLLSRGYVDSV 656
            S+PD + A+  VS++M N G E W  ++   R LR      L +   D+ L+  GYVDS 
Sbjct: 1131 SRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLI--GYVDSD 1188

Query: 657  LQVILTKEKSTTGYVFVLAGGVVS*ETKLQIIVA*STIEAEGMTATQACKEVIWSRRIME 836
                L + +S TGYVF +    VS    LQ +VA ST EAE M   +ACKE+IW + +  
Sbjct: 1189 YAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYA 1248

Query: 837  ELEHKQEKISRCCDSQSVLHIARNPAFHSRQKHIGVEYHLVQEVVEE 977
            EL   +  IS  CDS+S +++ ++  FH R KHI ++YH V++V+EE
Sbjct: 1249 ELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIEE 1295



 Score = 95.9 bits (237), Expect(2) = 1e-47
 Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
 Frame = +1

Query: 1    LYGFSQTSKCYYKRFDSYIRCLGYNKLNSDHCTYYKRFDGD----IAVVRGRHVGSKPQQ 168
            LYG  Q+ + + KRFDS++    + +   D C Y K  +G     +  V    + +K + 
Sbjct: 967  LYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKI 1026

Query: 169  RSSPRFXXXXXXXXXXXXLEPANKILGMQIHRDIKGRKIWLSQRNYLEKILRHFNMQDCK 348
              + +             L  A KILGM+I RD K   ++LSQ NY++K+L+ FNMQ+ K
Sbjct: 1027 EIT-KLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAK 1085

Query: 349  PILTHFPVNFKLSSSMYPSKEAERMEMSRVPYASVVG 459
             + T    +FKLS++  PS +AE   MSRVPY+S VG
Sbjct: 1086 AVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVG 1122