BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00002828
         (724 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   126   7e-27
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   121   2e-25
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   118   2e-24
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   116   7e-24
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   116   7e-24
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      114   4e-23
gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]     113   8e-23
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   113   8e-23
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   111   2e-22
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   110   4e-22
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   110   5e-22
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   110   5e-22
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   110   6e-22
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   108   1e-21
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   106   7e-21
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]               106   7e-21
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   106   9e-21
ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr...   103   5e-20
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   103   6e-20
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   103   6e-20

>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
           gi|548857444|gb|ERN15250.1| hypothetical protein
           AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  126 bits (317), Expect = 7e-27
 Identities = 58/91 (63%), Positives = 75/91 (82%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           + T DT I TPE++VM+QHM ++I E+L  L+PRE+QVL+LRYGLWDG CKSLEEIGR++
Sbjct: 437 EVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQVLMLRYGLWDGRCKSLEEIGRLY 496

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             TKEWIRKIEK AL KVR E+++ NL+ +L
Sbjct: 497 NVTKEWIRKIEKMALEKVRKEEVQCNLNFFL 527


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
           gi|462419859|gb|EMJ24122.1| hypothetical protein
           PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  121 bits (304), Expect = 2e-25
 Identities = 60/91 (65%), Positives = 74/91 (81%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDTS+++PEE VMRQHM++ I +LL+GLN RERQVL+LRYGL +   KSLEEIGR+F
Sbjct: 463 EFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLF 522

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEWIRKIEK AL K+R E+    LSHYL
Sbjct: 523 HVSKEWIRKIEKKALMKLRVEESHKYLSHYL 553


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  118 bits (296), Expect = 2e-24
 Identities = 59/91 (64%), Positives = 72/91 (79%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPD ++ TPEE VMRQHM+  I  LL+GLN RE++VL LRYGL   + KSLEEIGR+F
Sbjct: 452 EFTPDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLF 511

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEWIRKIEK+ALTK+R E+   NLSHYL
Sbjct: 512 HVSKEWIRKIEKNALTKLRNEESNKNLSHYL 542


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  116 bits (291), Expect = 7e-24
 Identities = 52/93 (55%), Positives = 75/93 (80%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +F PD S+++P+E+VMRQHM++ +F +L+ L+ RERQVL+LRYGL D   KSLEEIG++F
Sbjct: 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
             +KEWIRK+EK A+TK+R  +   +LSH+L+L
Sbjct: 502 HVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  116 bits (291), Expect = 7e-24
 Identities = 52/93 (55%), Positives = 75/93 (80%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +F PD S+++P+E+VMRQHM++ +F +L+ L+ RERQVL+LRYGL D   KSLEEIG++F
Sbjct: 442 EFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLF 501

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
             +KEWIRK+EK A+TK+R  +   +LSH+L+L
Sbjct: 502 HVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL 534


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  114 bits (284), Expect = 4e-23
 Identities = 54/91 (59%), Positives = 71/91 (78%)
 Frame = -2

Query: 717 TPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMFKC 538
           TPDT++  PE+ VM+QHM   + +LLQ L+P+ER+VLI RYGL +GHC SL E+G++F  
Sbjct: 459 TPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDV 517

Query: 537 TKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
           +KEWIRK+EK ALTK+RTE  + NL HYL L
Sbjct: 518 SKEWIRKMEKRALTKLRTEQNQTNLKHYLNL 548


>gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 476

 Score =  113 bits (282), Expect = 8e-23
 Identities = 58/93 (62%), Positives = 72/93 (77%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +F  D SI+TPEE VMRQHM+  I  LL+ L+PRERQVL+LRYGL +   KSLEEIG++F
Sbjct: 385 EFMADMSIKTPEETVMRQHMKSDIHNLLETLDPRERQVLVLRYGLINCQPKSLEEIGKLF 444

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
           K +KEWIRKIEK ALTK+R ++   + SHYL L
Sbjct: 445 KVSKEWIRKIEKKALTKLR-DETNEDFSHYLNL 476


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  113 bits (282), Expect = 8e-23
 Identities = 54/93 (58%), Positives = 71/93 (76%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +F PD SI+ PEE VMRQHM + I++LL+GL+ RE+QV++LRYG  D   KSL EIGR+F
Sbjct: 467 EFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLF 526

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
           + +KE +RKIEK  + K+R E IR NLS Y+IL
Sbjct: 527 RVSKERVRKIEKKIMIKLRDEGIRRNLSRYMIL 559


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  111 bits (278), Expect = 2e-22
 Identities = 53/91 (58%), Positives = 70/91 (76%)
 Frame = -2

Query: 723  DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
            +F PD S+R+PE+ VMRQHM++ I +LL GL+ RERQV++LRYGL     KSLEEIGR+F
Sbjct: 756  EFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLF 815

Query: 543  KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
              +KEWIR+IE  A+ K+R ++   NLSHYL
Sbjct: 816  HVSKEWIRRIEMKAMKKLRDKETCRNLSHYL 846


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  110 bits (276), Expect = 4e-22
 Identities = 53/91 (58%), Positives = 70/91 (76%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +F PDTS+++PEEVVMRQHM Q +  LL+ L+ RERQVLILR+GL D   KSLEEIGR F
Sbjct: 468 EFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHF 527

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEW+R++EK  +T++R E+   NL HY+
Sbjct: 528 HVSKEWVRRLEKRVMTRLRNEETCRNLRHYI 558


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  110 bits (275), Expect = 5e-22
 Identities = 53/91 (58%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDTSI++PEE  M+Q   + I  LL+GL+PRERQ+L+LRYG  +   KSLEEIGR F
Sbjct: 469 EFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRF 528

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEWIRK+EK+AL  +R E+I  NL HY+
Sbjct: 529 NVSKEWIRKLEKTALANLRDEEICQNLRHYV 559


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  110 bits (275), Expect = 5e-22
 Identities = 53/91 (58%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDTSI++PEE  M+Q   + I  LL+GL+PRERQ+L+LRYG  +   KSLEEIGR F
Sbjct: 519 EFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRF 578

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEWIRK+EK+AL  +R E+I  NL HY+
Sbjct: 579 NVSKEWIRKLEKTALANLRDEEICQNLRHYV 609


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  110 bits (274), Expect = 6e-22
 Identities = 53/87 (60%), Positives = 68/87 (78%)
 Frame = -2

Query: 711 DTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMFKCTK 532
           DTS+ +PEE V+RQHM   +  LL GL PRE+QV+ILR+GL +  CKSLEEIGR+F+ +K
Sbjct: 389 DTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVIILRFGLGNCQCKSLEEIGRLFRVSK 448

Query: 531 EWIRKIEKSALTKVRTEDIRWNLSHYL 451
           EWIRKIE+SAL K+R ED    L+HY+
Sbjct: 449 EWIRKIERSALIKLRNEDSLKILNHYV 475


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  108 bits (271), Expect = 1e-21
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDT++ +PEE VMRQ   + I +LL+GL PRE+QV++LRYGL D   KSLEEIG++F
Sbjct: 479 EFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLF 538

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
           K +KEWIRKIE+ A+ K+R +    +L +YL
Sbjct: 539 KVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score =  106 bits (265), Expect = 7e-21
 Identities = 50/91 (54%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDT++ +PEE VMRQ   + I +LL+GL PRE+QV++LRYGL D   KSLEEIG++ 
Sbjct: 479 EFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLL 538

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
           K +KEWIRKIE+ A+ K+R +    +L +YL
Sbjct: 539 KVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569


>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
          Length = 291

 Score =  106 bits (265), Expect = 7e-21
 Identities = 50/91 (54%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDT++ +PEE VMRQ   + I +LL+GL PRE+QV++LRYGL D   KSLEEIG++ 
Sbjct: 199 EFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLL 258

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
           K +KEWIRKIE+ A+ K+R +    +L +YL
Sbjct: 259 KVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 289


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  106 bits (264), Expect = 9e-21
 Identities = 52/91 (57%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FT D SI++PEE V R+ M++ IF +LQ L  RERQVL+LRYGL D   KSLEEIG++ 
Sbjct: 468 EFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLL 527

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
             +KEW+RKIEK A+TK++ E+   +LSHYL
Sbjct: 528 HISKEWVRKIEKKAMTKLKNEETVKHLSHYL 558


>ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum]
           gi|312281919|dbj|BAJ33825.1| unnamed protein product
           [Thellungiella halophila] gi|557104759|gb|ESQ45093.1|
           hypothetical protein EUTSA_v10010251mg [Eutrema
           salsugineum]
          Length = 562

 Score =  103 bits (258), Expect = 5e-20
 Identities = 50/91 (54%), Positives = 67/91 (73%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDT++ +PEE VMRQ   + + +LLQGL PRE+QV++LRYGL     KSLEEIG++ 
Sbjct: 470 EFTPDTTMESPEEAVMRQSAWRDVHDLLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLL 529

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
           K +KEWIRKIE+ A+ K+R +    NL  YL
Sbjct: 530 KVSKEWIRKIERRAMAKLRDQANAENLRFYL 560


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
           gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
           factor [Medicago truncatula]
          Length = 549

 Score =  103 bits (257), Expect = 6e-20
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = -2

Query: 714 PDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGH-CKSLEEIGRMFKC 538
           PD SI +PEE VM+QH+++ I ++LQ L+ RERQ++ILR+GL D H  KSLE IG++FK 
Sbjct: 459 PDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKV 518

Query: 537 TKEWIRKIEKSALTKVRTEDIRWNLSHYLIL 445
           +KEWIRKIEK ALTK+R E     L++YL L
Sbjct: 519 SKEWIRKIEKKALTKLRNETNISKLNYYLDL 549


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  103 bits (257), Expect = 6e-20
 Identities = 48/91 (52%), Positives = 69/91 (75%)
 Frame = -2

Query: 723 DFTPDTSIRTPEEVVMRQHMEQSIFELLQGLNPRERQVLILRYGLWDGHCKSLEEIGRMF 544
           +FTPDT++ +PEE VMRQ   + I +LL+GL PRE+QV++LRYGL +   KSLEEIG++ 
Sbjct: 476 EFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLL 535

Query: 543 KCTKEWIRKIEKSALTKVRTEDIRWNLSHYL 451
           + +KEWIRKIE+ A+ K+R +    +L +YL
Sbjct: 536 RVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 566