BLASTX nr result
ID: Cocculus22_contig00002522
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00002522
(4067 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 2274 0.0
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A... 2233 0.0
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2230 0.0
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 2223 0.0
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 2222 0.0
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 2221 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2215 0.0
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 2215 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2214 0.0
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not... 2212 0.0
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 2209 0.0
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 2205 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2204 0.0
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid... 2203 0.0
gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus... 2203 0.0
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su... 2202 0.0
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su... 2202 0.0
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su... 2201 0.0
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo... 2201 0.0
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su... 2200 0.0
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 2274 bits (5892), Expect = 0.0
Identities = 1124/1179 (95%), Positives = 1151/1179 (97%), Gaps = 4/1179 (0%)
Frame = -2
Query: 3928 MYGGDEYDPTA----NDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 3761
MYG DEYDPT D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 60
Query: 3760 DESDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRN 3581
DES DI IRPESQHNPGRQSDFLETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 61 DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 120
Query: 3580 LTYSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLT 3401
LTYSAPLYVDVTK+++KKGHD EEVTE E KVFIGKVPIMLRSSYCT+YQNSEKDLT
Sbjct: 121 LTYSAPLYVDVTKRIIKKGHDLEEVTETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLT 179
Query: 3400 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRP 3221
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP
Sbjct: 180 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 239
Query: 3220 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFS 3041
PSSMFVRMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFS
Sbjct: 240 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 299
Query: 3040 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGV 2861
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTR+KRIKYAKEILQKEMLPHVGV
Sbjct: 300 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 359
Query: 2860 GEYCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 2681
GEYCETKKAYYFGYI+HRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 360 GEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 419
Query: 2680 DVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 2501
DV+AY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 420 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 479
Query: 2500 YSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV 2321
Y+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 480 YASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV 539
Query: 2320 GSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQV 2141
GSAANPILEFLEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNP+LLVKTLRQLRRQV
Sbjct: 540 GSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQV 599
Query: 2140 DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWH 1961
DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK+DIRALQ RESP+DGGWH
Sbjct: 600 DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWH 659
Query: 1960 DLVAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASI 1781
DLV+KGFIEYVD TMISMTINDLI+ARL PEEAYSETYTHCEIHPSLILGVCASI
Sbjct: 660 DLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASI 719
Query: 1780 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR 1601
IPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 720 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR 779
Query: 1600 QLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFG 1421
QLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FG
Sbjct: 780 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 839
Query: 1420 RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDH 1241
RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDD+QGQASRYTRRDH
Sbjct: 840 RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDH 899
Query: 1240 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1061
STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 900 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 959
Query: 1060 DMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 881
DMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 960 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1019
Query: 880 ALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 701
ALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1020 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1079
Query: 700 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKN 521
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKN
Sbjct: 1080 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1139
Query: 520 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1140 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1178
>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
gi|548863150|gb|ERN20505.1| hypothetical protein
AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 2233 bits (5787), Expect = 0.0
Identities = 1103/1174 (93%), Positives = 1143/1174 (97%)
Frame = -2
Query: 3928 MYGGDEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESD 3749
M GG++ D +EDEEITQEDAWAVISAYF+EKGLVRQQLDSFDEFIQNTMQEIVDES
Sbjct: 1 MSGGEDDDYV--NEDEEITQEDAWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESA 58
Query: 3748 DIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 3569
DI IRPESQHNPGRQ+DF+ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
Sbjct: 59 DIEIRPESQHNPGRQADFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 118
Query: 3568 APLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 3389
APLYVDVTK+V+KKGHD EE+ E E + KVFIGKVPIMLRSSYCTL+QNSEKDLTELGE
Sbjct: 119 APLYVDVTKRVIKKGHDHEELAEQQE-LTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 177
Query: 3388 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSM 3209
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QN+PPSSM
Sbjct: 178 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSM 237
Query: 3208 FVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQM 3029
FVRMLSRTS+KGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDTQM
Sbjct: 238 FVRMLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQM 297
Query: 3028 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYC 2849
MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT++KRIKYAKEILQKEMLPHVGVGEYC
Sbjct: 298 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYC 357
Query: 2848 ETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKA 2669
ETKKAYYFGYI+HRLL+CA+GRRPEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDV++
Sbjct: 358 ETKKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRS 417
Query: 2668 YAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSST 2489
Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT++ST
Sbjct: 418 YVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFAST 477
Query: 2488 LSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 2309
LSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
Sbjct: 478 LSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 537
Query: 2308 NPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNT 2129
NPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNT
Sbjct: 538 NPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNT 597
Query: 2128 EVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVA 1949
EVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK DIRALQQRESPD+G WHDLVA
Sbjct: 598 EVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEG-WHDLVA 656
Query: 1948 KGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFP 1769
KGFIEYVD TMISMTI+DL++ARL PEEAYSETYTHCEIHPSLILGVCASIIPFP
Sbjct: 657 KGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFP 716
Query: 1768 DHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 1589
DHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
Sbjct: 717 DHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 776
Query: 1588 GINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNR 1409
GINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNR
Sbjct: 777 GINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNR 836
Query: 1408 ENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSL 1229
ENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q++ QGQASRYTRRDHSTSL
Sbjct: 837 ENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSL 896
Query: 1228 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1049
RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 897 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 956
Query: 1048 TIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 869
T+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
Sbjct: 957 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1016
Query: 868 CGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 689
CGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1017 CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1076
Query: 688 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFEC 509
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFEC
Sbjct: 1077 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFEC 1136
Query: 508 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 407
RGCKNKTDI+QVHIPYACKLLFQELMAMAIAPRM
Sbjct: 1137 RGCKNKTDIIQVHIPYACKLLFQELMAMAIAPRM 1170
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2230 bits (5779), Expect = 0.0
Identities = 1091/1171 (93%), Positives = 1139/1171 (97%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
+EYDPT DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 7 EEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 66
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 67 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 126
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 127 VDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 185
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRM
Sbjct: 186 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 245
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF+DTQMMELL
Sbjct: 246 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 305
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVGVGEYCETKK
Sbjct: 306 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 365
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y QK
Sbjct: 366 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 425
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHL
Sbjct: 426 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 485
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL
Sbjct: 486 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 545
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGV
Sbjct: 546 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGV 605
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIK+KDI+ALQQRE+P+DGGWHDLVAKGFI
Sbjct: 606 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFI 665
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL++ARL PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 666 EYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 725
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+Q RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 726 SPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 785
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTM
Sbjct: 786 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 845
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIAQD+ QG A+RYTRRDHSTSLRHSE
Sbjct: 846 GMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSE 905
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEG 965
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1025
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQVHIPYACKLLFQELM+MAIAPRML
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMSMAIAPRML 1176
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 2223 bits (5761), Expect = 0.0
Identities = 1092/1171 (93%), Positives = 1134/1171 (96%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
+++ DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 10 EQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 69
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPG+QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 70 RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 129
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 130 VDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF DTQMMELL
Sbjct: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVTRDKRIKYAKEILQKEMLPHVG G++CETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+AY QK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP+DGGWHDLVAKGFI
Sbjct: 609 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL+ ARL PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTM
Sbjct: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+ QGQASRYTRRDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 909 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
Length = 1195
Score = 2222 bits (5758), Expect = 0.0
Identities = 1091/1171 (93%), Positives = 1134/1171 (96%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
+++ DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 10 EQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 69
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPG+QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 70 RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 129
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 130 VDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF DTQMMELL
Sbjct: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVTRDKRIKYAKEILQKEMLPHVG G++CETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+AY QK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP+DGGWHDLVAKGFI
Sbjct: 609 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL+ ARL PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTM
Sbjct: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+ QGQASRYTRRDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 909 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 2221 bits (5754), Expect = 0.0
Identities = 1093/1177 (92%), Positives = 1136/1177 (96%), Gaps = 2/1177 (0%)
Frame = -2
Query: 3928 MYGGDEYDPTANDE--DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 3755
M EYDP D+ DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 3754 SDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3575
S DI IRPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3574 YSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 3395
YSAPLYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTEL
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 179
Query: 3394 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPS 3215
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS
Sbjct: 180 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 239
Query: 3214 SMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDT 3035
+MFVRMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDT
Sbjct: 240 TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDT 299
Query: 3034 QMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGE 2855
QMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVGVG+
Sbjct: 300 QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGD 359
Query: 2854 YCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 2675
+CETKKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
Sbjct: 360 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 419
Query: 2674 KAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYS 2495
++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+
Sbjct: 420 RSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 479
Query: 2494 STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS 2315
STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS
Sbjct: 480 STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539
Query: 2314 AANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDV 2135
AA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNP++LV TLR+LRR+VDV
Sbjct: 540 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDV 599
Query: 2134 NTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDL 1955
NTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRESP+DGGWHDL
Sbjct: 600 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDL 659
Query: 1954 VAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIP 1775
VAKGFIEY+D TMISMTINDL+ AR+ PEEAYSETYTHCEIHPSLILGVCASIIP
Sbjct: 660 VAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIP 719
Query: 1774 FPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 1595
FPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
Sbjct: 720 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 779
Query: 1594 PAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRP 1415
PAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP
Sbjct: 780 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 839
Query: 1414 NRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHST 1235
+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++ QGQASRY+RRDHS
Sbjct: 840 DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSI 899
Query: 1234 SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1055
SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1054 PWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 875
PWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL 1019
Query: 874 HKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 695
HKCGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 694 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSF 515
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 514 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
ECRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRML
Sbjct: 1140 ECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1176
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2215 bits (5740), Expect = 0.0
Identities = 1089/1173 (92%), Positives = 1135/1173 (96%), Gaps = 2/1173 (0%)
Frame = -2
Query: 3916 DEYDPTAN--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDI 3743
DEY+P N D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3742 IIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3563
IRPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3562 LYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3383
LYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 183
Query: 3382 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFV 3203
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+ QNRPPS+MFV
Sbjct: 184 LDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFV 243
Query: 3202 RMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMME 3023
RMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF+DTQMME
Sbjct: 244 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMME 303
Query: 3022 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCET 2843
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVGVGEYCET
Sbjct: 304 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCET 363
Query: 2842 KKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYA 2663
KKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y
Sbjct: 364 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYV 423
Query: 2662 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLS 2483
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLS
Sbjct: 424 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 483
Query: 2482 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANP 2303
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA P
Sbjct: 484 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 543
Query: 2302 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 2123
ILEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+P++LV+TLR+LRR+VDVNTEV
Sbjct: 544 ILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEV 603
Query: 2122 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKG 1943
GV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL+IKKKDI+ LQQRESPD+GGWHDLVAKG
Sbjct: 604 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKG 663
Query: 1942 FIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 1763
+IEY+D TMISMTINDL+ ARL P +AYS+TYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 664 YIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDH 723
Query: 1762 NQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1583
NQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 724 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 783
Query: 1582 NAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNREN 1403
NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R +
Sbjct: 784 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAS 843
Query: 1402 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRH 1223
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDD QGQASRYTR+DHSTSLRH
Sbjct: 844 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRH 903
Query: 1222 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 1043
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1042 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 863
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 964 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 862 YQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 683
YQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 682 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRG 503
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 502 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1176
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 2215 bits (5739), Expect = 0.0
Identities = 1089/1173 (92%), Positives = 1135/1173 (96%), Gaps = 2/1173 (0%)
Frame = -2
Query: 3916 DEYDPTAN--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDI 3743
DEY+P N D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3742 IIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3563
IRPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3562 LYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3383
LYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 183
Query: 3382 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFV 3203
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPS+MFV
Sbjct: 184 LDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFV 243
Query: 3202 RMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMME 3023
RMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF+DTQMME
Sbjct: 244 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMME 303
Query: 3022 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCET 2843
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVGVGEYCET
Sbjct: 304 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCET 363
Query: 2842 KKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYA 2663
KKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y
Sbjct: 364 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYV 423
Query: 2662 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLS 2483
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLS
Sbjct: 424 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 483
Query: 2482 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANP 2303
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA P
Sbjct: 484 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 543
Query: 2302 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 2123
ILEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+P++LV+TLR+LRR+VDVNTEV
Sbjct: 544 ILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEV 603
Query: 2122 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKG 1943
GV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL+IKKKDI+ LQQRESPD+GGWHDLVAKG
Sbjct: 604 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKG 663
Query: 1942 FIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 1763
+IEY+D TMISMTINDL+ ARL P +AYS+TYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 664 YIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDH 723
Query: 1762 NQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1583
NQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 724 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 783
Query: 1582 NAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNREN 1403
NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R
Sbjct: 784 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAT 843
Query: 1402 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRH 1223
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDD QGQASRYTR+DHSTSLRH
Sbjct: 844 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRH 903
Query: 1222 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 1043
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1042 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 863
EGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 964 EGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 862 YQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 683
YQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 682 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRG 503
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 502 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1176
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2214 bits (5738), Expect = 0.0
Identities = 1093/1180 (92%), Positives = 1136/1180 (96%), Gaps = 5/1180 (0%)
Frame = -2
Query: 3928 MYGGDEYDPTAN----DEDE-EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 3764
M EYD N DEDE EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1 MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
Query: 3763 VDESDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLR 3584
VDES DI IRPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
Query: 3583 NLTYSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDL 3404
NLTYSAPLYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDL
Sbjct: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDL 179
Query: 3403 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNR 3224
TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNR
Sbjct: 180 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
Query: 3223 PPSSMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDF 3044
PPS+MFVRMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF
Sbjct: 240 PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
Query: 3043 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVG 2864
SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVG
Sbjct: 300 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVG 359
Query: 2863 VGEYCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 2684
VGEYCETKKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT
Sbjct: 360 VGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
Query: 2683 RDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 2504
RDV++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL
Sbjct: 420 RDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 479
Query: 2503 TYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 2324
TY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT
Sbjct: 480 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
Query: 2323 VGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQ 2144
VGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR+
Sbjct: 540 VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRR 599
Query: 2143 VDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGW 1964
VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES ++GGW
Sbjct: 600 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGW 659
Query: 1963 HDLVAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCAS 1784
HDLVAKGFIEY+D TMISMTI+DL+ AR+ PEEAYS+TYTHCEIHPSLILGVCAS
Sbjct: 660 HDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCAS 719
Query: 1783 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 1604
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
Query: 1603 RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 1424
RQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+F
Sbjct: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
Query: 1423 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRD 1244
GRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQ++ QGQ++RYTRRD
Sbjct: 840 GRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRD 899
Query: 1243 HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 1064
HS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 900 HSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
Query: 1063 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 884
EDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 960 EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
Query: 883 KALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 704
KALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR
Sbjct: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
Query: 703 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKK 524
QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKK
Sbjct: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK 1139
Query: 523 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 2212 bits (5733), Expect = 0.0
Identities = 1089/1174 (92%), Positives = 1134/1174 (96%), Gaps = 4/1174 (0%)
Frame = -2
Query: 3913 EYDPTANDED---EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDI 3743
EYD ND+D EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI
Sbjct: 6 EYDQQYNDDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65
Query: 3742 IIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3563
IRPESQHNPG QSDF+ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 66 EIRPESQHNPGHQSDFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 125
Query: 3562 LYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3383
LYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 126 LYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 184
Query: 3382 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFV 3203
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFV
Sbjct: 185 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 244
Query: 3202 RMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMME 3023
RMLSRTS+KGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDTQMME
Sbjct: 245 RMLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMME 304
Query: 3022 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCET 2843
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVG GE+CET
Sbjct: 305 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCET 364
Query: 2842 KKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYA 2663
KKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y
Sbjct: 365 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYV 424
Query: 2662 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLS 2483
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLS
Sbjct: 425 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484
Query: 2482 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANP 2303
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA P
Sbjct: 485 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544
Query: 2302 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 2123
ILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEV
Sbjct: 545 ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEV 604
Query: 2122 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKG 1943
GV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DIRALQQRE+P++ GWHDLV+ G
Sbjct: 605 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNG 664
Query: 1942 FIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 1763
FIEY+D TMISMTINDL+ ARL PEEAYSETYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665 FIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 724
Query: 1762 NQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1583
NQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784
Query: 1582 NAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNREN 1403
NAIVAI CYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R N
Sbjct: 785 NAIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 844
Query: 1402 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQ-ASRYTRRDHSTSLR 1226
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQD+ QGQ ASRYTRRDHS SLR
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLR 904
Query: 1225 HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 1046
HSE+G+VDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 905 HSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 964
Query: 1045 IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 866
+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 965 VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1024
Query: 865 GYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 686
GYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 1025 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1084
Query: 685 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECR 506
SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECR
Sbjct: 1085 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR 1144
Query: 505 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1145 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1178
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 2209 bits (5724), Expect = 0.0
Identities = 1085/1174 (92%), Positives = 1132/1174 (96%)
Frame = -2
Query: 3928 MYGGDEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESD 3749
M D+ D D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES
Sbjct: 11 MNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 70
Query: 3748 DIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 3569
DI IRPESQHNPG QSD ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
Sbjct: 71 DIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 130
Query: 3568 APLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 3389
APLYVDV+K+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
Sbjct: 131 APLYVDVSKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 189
Query: 3388 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSM 3209
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPS+M
Sbjct: 190 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTM 249
Query: 3208 FVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQM 3029
FVRMLSRTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDTQM
Sbjct: 250 FVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQM 309
Query: 3028 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYC 2849
MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVT++KRIKYAKEILQKEMLPHVGVGE+C
Sbjct: 310 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFC 369
Query: 2848 ETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKA 2669
ETKKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+
Sbjct: 370 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRG 429
Query: 2668 YAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSST 2489
Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+ST
Sbjct: 430 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 489
Query: 2488 LSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 2309
LSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA
Sbjct: 490 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 549
Query: 2308 NPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNT 2129
PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNT
Sbjct: 550 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 609
Query: 2128 EVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVA 1949
EVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRESP+DGGWHDLVA
Sbjct: 610 EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVA 669
Query: 1948 KGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFP 1769
KGFIEY+D TMISMTI+DLI AR+ P EAYS+TYTHCEIHPSLILGVCASIIPFP
Sbjct: 670 KGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFP 729
Query: 1768 DHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 1589
DHNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
Sbjct: 730 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 789
Query: 1588 GINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNR 1409
GINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R
Sbjct: 790 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 849
Query: 1408 ENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSL 1229
NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++ QGQA+RY+RRDHS SL
Sbjct: 850 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISL 909
Query: 1228 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1049
RHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 910 RHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 969
Query: 1048 TIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 869
T+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
Sbjct: 970 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1029
Query: 868 CGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 689
CGYQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1030 CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1089
Query: 688 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFEC 509
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVC+ CGLIAIANLKK+SFEC
Sbjct: 1090 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFEC 1149
Query: 508 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 407
RGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM
Sbjct: 1150 RGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRM 1183
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 2205 bits (5713), Expect = 0.0
Identities = 1091/1171 (93%), Positives = 1128/1171 (96%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
DE + DE EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 4 DEAEGDGPDE-EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 62
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPGRQ++F ET++KI FGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLY
Sbjct: 63 RPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLY 122
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDV+ +VMKKGHD EEVTE E PKVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYD
Sbjct: 123 VDVSYRVMKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYD 181
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRP SSMFVRM
Sbjct: 182 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRM 241
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSR AKGGSSGQYIRATLPYI+ +IPII+VFRALGFVADKDILEHICYDFSDTQMMELL
Sbjct: 242 LSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 301
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVGVGE+CETKK
Sbjct: 302 RPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKK 361
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV++Y QK
Sbjct: 362 AYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQK 421
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTY+STLSHL
Sbjct: 422 CVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHL 481
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL
Sbjct: 482 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 541
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTLR+LRRQ+DVNTEVGV
Sbjct: 542 EFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGV 601
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKKK IRALQQRE+P++G WHDLVAKGFI
Sbjct: 602 VRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKKHIRALQQRETPEEG-WHDLVAKGFI 660
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL+ AR PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 661 EYIDTEEEETTMISMTINDLVNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 720
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 721 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 780
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM
Sbjct: 781 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 840
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QDD QGQA+RYT+RDHSTSLRHSE
Sbjct: 841 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSE 900
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG
Sbjct: 901 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 960
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 961 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1020
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1021 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1080
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1081 GGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCK 1140
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1141 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 1171
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 2204 bits (5710), Expect = 0.0
Identities = 1081/1171 (92%), Positives = 1131/1171 (96%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
DE D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 10 DEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 69
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 70 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 129
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDV+K+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 130 VDVSKRVIKKGHDGEEVTE-AQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSRTS+KGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFS TQMMELL
Sbjct: 249 LSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELL 308
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVGVGEYCETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 368
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y QK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 428
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TL++LRR+VDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGV 608
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRESP+DGGWHDLV+KGFI
Sbjct: 609 VRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFI 668
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL+ AR+ PE+AYS+TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IV+I CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTM
Sbjct: 789 IVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 848
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++ QGQA RYTRRDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSE 908
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 909 TGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1148
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQV+IPYACKLLFQELMAMAIAPRML
Sbjct: 1149 NKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179
>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein
OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 2203 bits (5709), Expect = 0.0
Identities = 1090/1186 (91%), Positives = 1131/1186 (95%), Gaps = 12/1186 (1%)
Frame = -2
Query: 3925 YGGDEYDPTANDE------------DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 3782
YG +EY +E +EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
Sbjct: 26 YGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ 85
Query: 3781 NTMQEIVDESDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFP 3602
NTMQEIVDES DI IRPESQHNPGRQ++F ET++KI FGQIYLSKPMMTE+DGETATLFP
Sbjct: 86 NTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFP 145
Query: 3601 KAARLRNLTYSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQ 3422
K+ARLRNLTYSAPLYVDV+ +VMKKGHD EEVTE E PKVFIGKVPIMLRSSYCTL+Q
Sbjct: 146 KSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQ 204
Query: 3421 NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 3242
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM
Sbjct: 205 QSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 264
Query: 3241 AENQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILE 3062
AENQNRP SSMFVRMLSR AKGGSSGQYIRATLPYI+ +IPII+VFRALGFVADKDILE
Sbjct: 265 AENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILE 324
Query: 3061 HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKE 2882
HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKE
Sbjct: 325 HICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKE 384
Query: 2881 MLPHVGVGEYCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 2702
MLPHVGVGE+CETKKAYYFGYI+HRLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 385 MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 444
Query: 2701 LFRKLTRDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 2522
LFRKLTRDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVS
Sbjct: 445 LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVS 504
Query: 2521 QVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 2342
QVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
Sbjct: 505 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 564
Query: 2341 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 2162
LMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTL
Sbjct: 565 LMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTL 624
Query: 2161 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRES 1982
R+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKK+ IRALQQRE+
Sbjct: 625 RRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRET 684
Query: 1981 PDDGGWHDLVAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLI 1802
P++G WHDLVAKGFIEY+D TMISMTINDLI AR PEEAYSETYTHCEIHPSLI
Sbjct: 685 PEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 743
Query: 1801 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRA 1622
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRA
Sbjct: 744 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 803
Query: 1621 MEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 1442
MEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 804 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 863
Query: 1441 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQAS 1262
LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QDD QGQA+
Sbjct: 864 LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQAT 923
Query: 1261 RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 1082
RYT+RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV
Sbjct: 924 RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 983
Query: 1081 GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 902
GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 984 GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1043
Query: 901 TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 722
TVDNISKALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 1044 TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1103
Query: 721 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIA 542
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVC+ CGLIA
Sbjct: 1104 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA 1163
Query: 541 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1164 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1209
>gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus guttatus]
Length = 1197
Score = 2203 bits (5708), Expect = 0.0
Identities = 1081/1175 (92%), Positives = 1131/1175 (96%), Gaps = 1/1175 (0%)
Frame = -2
Query: 3925 YGGDEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDD 3746
Y +E++ +++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES D
Sbjct: 12 YPDEEFE---EEDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 68
Query: 3745 IIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 3566
I IRPESQHNPG Q DF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 69 IEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 128
Query: 3565 PLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 3386
PLYVDVTK+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC
Sbjct: 129 PLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 187
Query: 3385 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMF 3206
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE QNRPPS+MF
Sbjct: 188 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMF 247
Query: 3205 VRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMM 3026
+RML+RTSAKGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICY+F DTQMM
Sbjct: 248 IRMLARTSAKGGSSGQYIRATLPYIRSEIPIIIVFRALGFVADKDILEHICYNFQDTQMM 307
Query: 3025 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCE 2846
ELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTRD+RIKYAKEILQKEMLPHVGVGEYCE
Sbjct: 308 ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDRRIKYAKEILQKEMLPHVGVGEYCE 367
Query: 2845 TKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAY 2666
TKKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y
Sbjct: 368 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY 427
Query: 2665 AQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTL 2486
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STL
Sbjct: 428 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 487
Query: 2485 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 2306
SHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA
Sbjct: 488 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 547
Query: 2305 PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 2126
PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHRNP++LV TLR+LRR+VDVNTE
Sbjct: 548 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTE 607
Query: 2125 VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAK 1946
VGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI+ALQQRESPDDGGWHDLVAK
Sbjct: 608 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAK 667
Query: 1945 GFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPD 1766
GFIEY+D TMISMTINDL++AR+ P EAYS+TYTHCEIHPSLILGVCASIIPFPD
Sbjct: 668 GFIEYIDTEEEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLILGVCASIIPFPD 727
Query: 1765 HNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 1586
HNQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 728 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 787
Query: 1585 INAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRE 1406
INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R
Sbjct: 788 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRA 847
Query: 1405 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQA-SRYTRRDHSTSL 1229
NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI D+ QGQA +RYT+RDHSTSL
Sbjct: 848 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSL 907
Query: 1228 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1049
RHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 908 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 967
Query: 1048 TIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 869
T+EGI PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHK
Sbjct: 968 TLEGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1027
Query: 868 CGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 689
CGYQMRG+ETMYNGHTGRKL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1028 CGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1087
Query: 688 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFEC 509
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVC+ CGLIAIANLKKNSFEC
Sbjct: 1088 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLIAIANLKKNSFEC 1147
Query: 508 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
R CKNKTDIVQVHIPYACKLLFQELM+MAIAPRML
Sbjct: 1148 RACKNKTDIVQVHIPYACKLLFQELMSMAIAPRML 1182
>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1193
Score = 2202 bits (5707), Expect = 0.0
Identities = 1081/1171 (92%), Positives = 1131/1171 (96%)
Frame = -2
Query: 3916 DEYDPTANDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIII 3737
DE +D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I
Sbjct: 10 DEQMMEEDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 69
Query: 3736 RPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3557
RPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 70 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 129
Query: 3556 VDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3377
VDV+K+V+KKGHDGEEVTE + + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 130 VDVSKRVVKKGHDGEEVTETQD-LTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
Query: 3376 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRM 3197
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRM
Sbjct: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
Query: 3196 LSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELL 3017
LSRTS+KGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDT MMELL
Sbjct: 249 LSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELL 308
Query: 3016 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKK 2837
RPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVGVGEYCETKK
Sbjct: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 368
Query: 2836 AYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQK 2657
AYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y QK
Sbjct: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 428
Query: 2656 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHL 2477
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHL
Sbjct: 429 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
Query: 2476 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 2297
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL
Sbjct: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
Query: 2296 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 2117
EFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TLR+LRR+VDVNTEVGV
Sbjct: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGV 608
Query: 2116 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFI 1937
+RDI LKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRESP+DGGWHDLV+KGFI
Sbjct: 609 VRDIILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFI 668
Query: 1936 EYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 1757
EY+D TMISMTINDL+ AR+ PE+AY+ TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 669 EYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQ 728
Query: 1756 SPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1577
SPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
Query: 1576 IVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTM 1397
IVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTM
Sbjct: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 848
Query: 1396 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSE 1217
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++ QGQA RYTRRDHS SLRHSE
Sbjct: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSE 908
Query: 1216 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 1037
+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 909 TGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
Query: 1036 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 857
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
Query: 856 MRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 677
MRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 676 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCK 497
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1148
Query: 496 NKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NKTDIVQV+IPYACKLLFQELMAMAIAPRML
Sbjct: 1149 NKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179
>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
arietinum]
Length = 1194
Score = 2202 bits (5705), Expect = 0.0
Identities = 1079/1173 (91%), Positives = 1135/1173 (96%), Gaps = 3/1173 (0%)
Frame = -2
Query: 3913 EYDPTANDED---EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDI 3743
EYD DE+ EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI
Sbjct: 8 EYDQQMMDEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 67
Query: 3742 IIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3563
IRPESQHNPG QSDF ETIYKI FGQIYLSKPMMTESDGET+TLFPKAARLRNLTYSAP
Sbjct: 68 EIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETSTLFPKAARLRNLTYSAP 127
Query: 3562 LYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3383
LYVDV+K+V+KKGHDGEEVTE + KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 128 LYVDVSKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 186
Query: 3382 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFV 3203
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFV
Sbjct: 187 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
Query: 3202 RMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMME 3023
RMLSRTS+KGGSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDFSDTQMME
Sbjct: 247 RMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMME 306
Query: 3022 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCET 2843
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAK+ILQ+EMLPHVGVGEYCET
Sbjct: 307 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQREMLPHVGVGEYCET 366
Query: 2842 KKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYA 2663
KKAYYFGYI+HRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV+ Y
Sbjct: 367 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYV 426
Query: 2662 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLS 2483
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLS
Sbjct: 427 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
Query: 2482 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANP 2303
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA P
Sbjct: 487 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
Query: 2302 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 2123
ILEFLEEW TENFEEISPAVIPQATKIFVNGCW+GIHR+P++LV+TLR+LRR+VDVNTEV
Sbjct: 547 ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEV 606
Query: 2122 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKG 1943
GV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI +LQQRESP++GGWHDLV+KG
Sbjct: 607 GVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEEGGWHDLVSKG 666
Query: 1942 FIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 1763
FIEY+D TMISMTINDL+ ARL PEEAYS+TYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 667 FIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDH 726
Query: 1762 NQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1583
NQSPRNTYQSAMGKQAMGIYVTN+Q RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 727 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
Query: 1582 NAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNREN 1403
NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R N
Sbjct: 787 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAN 846
Query: 1402 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRH 1223
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q++ QGQA+RY++RDHS SLRH
Sbjct: 847 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRH 906
Query: 1222 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 1043
SE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 907 SETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
Query: 1042 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 863
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 967 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
Query: 862 YQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 683
YQMRGFETMYNGHTGR+LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1027 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
Query: 682 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRG 503
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRG
Sbjct: 1087 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
Query: 502 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
CKNKTDIVQV+IPYACKLLFQELMAMAIAPRML
Sbjct: 1147 CKNKTDIVQVYIPYACKLLFQELMAMAIAPRML 1179
>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
X1 [Setaria italica]
Length = 1226
Score = 2201 bits (5702), Expect = 0.0
Identities = 1088/1180 (92%), Positives = 1130/1180 (95%), Gaps = 6/1180 (0%)
Frame = -2
Query: 3925 YGGDEYDPTANDED------EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 3764
YGG + D D D EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 36 YGGGDGDEMEEDGDAEQRDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 95
Query: 3763 VDESDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLR 3584
VDES DI IRPESQHNPGRQ++F ET++KI FGQIYLSKPMMTE+DGETATLFPK+ARLR
Sbjct: 96 VDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLR 155
Query: 3583 NLTYSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDL 3404
NLTYSAPLYVDV+ +VMKKGHD EEVTE + PKVFIGKVPIMLRSSYCTLYQ SEKDL
Sbjct: 156 NLTYSAPLYVDVSYRVMKKGHDCEEVTETSD-YPKVFIGKVPIMLRSSYCTLYQQSEKDL 214
Query: 3403 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNR 3224
TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK++YVAEVRSMAENQNR
Sbjct: 215 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFSYVAEVRSMAENQNR 274
Query: 3223 PPSSMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDF 3044
P SSMFVRMLSR AKGGSSGQYIRATLPYI+ +IPII+VFRALGFVADKDILEHICYDF
Sbjct: 275 PASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDF 334
Query: 3043 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVG 2864
SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG
Sbjct: 335 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVG 394
Query: 2863 VGEYCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 2684
VGE+CETKKAYYFGYI+HRLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT
Sbjct: 395 VGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 454
Query: 2683 RDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 2504
RDV++Y QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRL
Sbjct: 455 RDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRL 514
Query: 2503 TYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 2324
TY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT
Sbjct: 515 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 574
Query: 2323 VGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQ 2144
VGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTLR+LRRQ
Sbjct: 575 VGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQ 634
Query: 2143 VDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGW 1964
+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE QRLLIKK IRALQQRE+PD+G W
Sbjct: 635 IDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEG-W 693
Query: 1963 HDLVAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCAS 1784
H+LV+KG+IEY+D TMISMTINDLI AR PEEAYSETYTHCEIHPSLILGVCAS
Sbjct: 694 HELVSKGYIEYIDTEEEETTMISMTINDLINARHNPEEAYSETYTHCEIHPSLILGVCAS 753
Query: 1783 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 1604
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 754 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 813
Query: 1603 RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 1424
RQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF
Sbjct: 814 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 873
Query: 1423 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRD 1244
GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QDD QGQASRY++RD
Sbjct: 874 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRD 933
Query: 1243 HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 1064
HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 934 HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 993
Query: 1063 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 884
EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 994 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1053
Query: 883 KALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 704
KALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR
Sbjct: 1054 KALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1113
Query: 703 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKK 524
QPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVC+ CGLIAIANLKK
Sbjct: 1114 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKK 1173
Query: 523 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1174 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1213
>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 2201 bits (5702), Expect = 0.0
Identities = 1085/1162 (93%), Positives = 1125/1162 (96%)
Frame = -2
Query: 3889 EDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIIIRPESQHNPG 3710
++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI IRPESQHNPG
Sbjct: 46 DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 105
Query: 3709 RQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMK 3530
RQ++F ET++KI FGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +VMK
Sbjct: 106 RQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK 165
Query: 3529 KGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3350
KGHD EEVTE E PKVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFIING
Sbjct: 166 KGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIING 224
Query: 3349 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRMLSRTSAKGG 3170
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRP SSMFVRMLSR AKGG
Sbjct: 225 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGG 284
Query: 3169 SSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 2990
SSGQYIRATLPYI+ +IPII+VFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 285 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 344
Query: 2989 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIVH 2810
IQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYI+H
Sbjct: 345 IQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 404
Query: 2809 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKAYAQKCVDNGKDVN 2630
RLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV++Y QKCVDNGK+VN
Sbjct: 405 RLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN 464
Query: 2629 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGR 2450
LQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTY+STLSHLRRLNSPIGR
Sbjct: 465 LQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 524
Query: 2449 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 2270
EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TE
Sbjct: 525 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE 584
Query: 2269 NFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKEL 2090
NFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTLR+LRRQ+DVNTEVGV+RDIRLKEL
Sbjct: 585 NFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKEL 644
Query: 2089 RLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFIEYVDXXXXX 1910
RLYTDYGRCSRPLFIVE QRLLIKK+ IRALQQRE+P++G WHDLVAKGFIEY+D
Sbjct: 645 RLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEG-WHDLVAKGFIEYIDTEEEE 703
Query: 1909 XTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 1730
TMISMTINDLI AR PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 704 TTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 763
Query: 1729 MGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAITCYSG 1550
MGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI CYSG
Sbjct: 764 MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 823
Query: 1549 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDK 1370
YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDK
Sbjct: 824 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDK 883
Query: 1369 LDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRDHSTSLRHSESGMVDQVLL 1190
LDDDGLAPPGTRVSGEDVIIGKT+PI QDD QGQA+RYT+RDHSTSLRHSESGMVDQVLL
Sbjct: 884 LDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLL 943
Query: 1189 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNP 1010
TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNP
Sbjct: 944 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNP 1003
Query: 1009 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 830
HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN
Sbjct: 1004 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1063
Query: 829 GHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 650
GHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1064 GHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1123
Query: 649 RDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKKNSFECRGCKNKTDIVQVH 470
RDCMIAHGAA FLKERLFDQSDAYRVHVC+ CGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1124 RDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVH 1183
Query: 469 IPYACKLLFQELMAMAIAPRML 404
IPYACKLLFQELMAMAIAPRML
Sbjct: 1184 IPYACKLLFQELMAMAIAPRML 1205
>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 2200 bits (5701), Expect = 0.0
Identities = 1087/1180 (92%), Positives = 1131/1180 (95%), Gaps = 7/1180 (0%)
Frame = -2
Query: 3922 GGDEYDPTAND-------EDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 3764
GGD D D ++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 38 GGDGVDMEDEDAEGEEARDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 97
Query: 3763 VDESDDIIIRPESQHNPGRQSDFLETIYKIGFGQIYLSKPMMTESDGETATLFPKAARLR 3584
VDES DI IRPESQHNPGRQ++F ET++KI FGQIYLSKPMMTE+DGETATLFPK+ARLR
Sbjct: 98 VDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLR 157
Query: 3583 NLTYSAPLYVDVTKQVMKKGHDGEEVTENPETIPKVFIGKVPIMLRSSYCTLYQNSEKDL 3404
NLTYSAPLYVDV+ +V+KKGHD EEVTE E PKVFIGKVPIMLRSSYCTL+Q SEKDL
Sbjct: 158 NLTYSAPLYVDVSYRVVKKGHDCEEVTETME-YPKVFIGKVPIMLRSSYCTLFQQSEKDL 216
Query: 3403 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNR 3224
TELGECPYDQGGYF+INGSEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAENQNR
Sbjct: 217 TELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNR 276
Query: 3223 PPSSMFVRMLSRTSAKGGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDF 3044
P SSMFVRMLSR AKGGSSGQYIRATLPYI+ +IPII+VFRALGFVADKDILEHICYDF
Sbjct: 277 PASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDF 336
Query: 3043 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVG 2864
SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG
Sbjct: 337 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVG 396
Query: 2863 VGEYCETKKAYYFGYIVHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 2684
VGE+CETKKAYYFGYI+HRLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT
Sbjct: 397 VGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 456
Query: 2683 RDVKAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 2504
RDV++Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRL
Sbjct: 457 RDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRL 516
Query: 2503 TYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 2324
TY+STLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT
Sbjct: 517 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 576
Query: 2323 VGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQ 2144
VGSAANPILEFLEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNP+LLVKTLR+LRRQ
Sbjct: 577 VGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQ 636
Query: 2143 VDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGW 1964
+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIV+ QRLLIKKK IRALQQRE+PD+G W
Sbjct: 637 IDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEG-W 695
Query: 1963 HDLVAKGFIEYVDXXXXXXTMISMTINDLITARLKPEEAYSETYTHCEIHPSLILGVCAS 1784
HDLVAKGFIEY+D TMISMTINDL++AR P+EAYSETYTHCEIHPSLILGVCAS
Sbjct: 696 HDLVAKGFIEYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCAS 755
Query: 1783 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 1604
IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QLRMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 756 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 815
Query: 1603 RQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 1424
RQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF
Sbjct: 816 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEF 875
Query: 1423 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTQGQASRYTRRD 1244
GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QDD QGQA+RY++RD
Sbjct: 876 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRD 935
Query: 1243 HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 1064
HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 936 HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 995
Query: 1063 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 884
EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 996 EDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1055
Query: 883 KALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 704
KALHKCGYQMRGFETMYNGHTGRKL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR
Sbjct: 1056 KALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1115
Query: 703 QPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIANLKK 524
QPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERLFDQSDAYRVHVC+ CGLIAIANLKK
Sbjct: 1116 QPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKK 1175
Query: 523 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 404
NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML
Sbjct: 1176 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1215