BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00001387
         (1279 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006841200.1| hypothetical protein AMTR_s00334p00015220 [A...   107   2e-22
ref|YP_006503792.1| photosystem I assembly protein Ycf3 (chlorop...   109   2e-21
ref|XP_003620942.1| Photosystem I assembly protein Ycf3 [Medicag...   105   3e-21
ref|XP_003599571.1| Photosystem I assembly protein Ycf3 [Medicag...   106   2e-20
ref|YP_538849.1| photosystem I assembly protein Ycf3 [Solanum bu...   105   3e-20
ref|YP_635640.1| photosystem I assembly protein Ycf3 [Solanum tu...   105   3e-20
ref|NP_054498.1| photosystem I assembly protein Ycf3 [Nicotiana ...   105   3e-20
ref|NP_783233.1| photosystem I assembly protein Ycf3 [Atropa bel...   105   3e-20
gb|AEX37307.1| photosystem I assembly protein Ycf3 (chloroplast)...   105   3e-20
ref|YP_740651.1| photosystem I assembly protein ycf3 [Nandina do...   104   7e-20
ref|YP_008963481.1| hypothetical chloroplast RF34 (chloroplast) ...   104   9e-20
gb|AFK81300.1| hypothetical chloroplast RF34 [Camellia sinensis ...   104   9e-20
gb|AGW04976.1| photosystem I assembly protein [Vincetoxicum ross...   104   9e-20
gb|AGW04519.1| photosystem I assembly protein [Eustegia minuta]       104   9e-20
ref|YP_008592489.1| photosystem I assembly protein Ycf3 (chlorop...   104   9e-20
gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rume...   104   9e-20
ref|YP_007890374.1| hypothetical chloroplast RF34 (chloroplast) ...   104   9e-20
ref|YP_008578540.1| photosystem I assembly protein (chloroplast)...   104   9e-20
gb|ADD30872.1| putative RF3 protein [Heuchera sanguinea]              104   9e-20
gb|ADD30856.1| putative RF3 protein [Dillenia indica]                 104   9e-20

>ref|XP_006841200.1| hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda]
           gi|548843107|gb|ERN02875.1| hypothetical protein
           AMTR_s00334p00015220 [Amborella trichopoda]
          Length = 70

 Score =  107 bits (268), Expect(2) = 2e-22
 Identities = 50/58 (86%), Positives = 53/58 (91%)
 Frame = -3

Query: 542 RKGTTYSDRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           R  + YSDRGEQAI+QGDSEIAEAWFDQAAEYWKQA+ALTPGNYIEA NWLKITRR E
Sbjct: 13  RNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIEAQNWLKITRRFE 70



 Score = 26.2 bits (56), Expect(2) = 2e-22
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -2

Query: 573 MR*ETLKYGSKERN 532
           MR ETLKYGSK RN
Sbjct: 1   MRSETLKYGSKGRN 14


>ref|YP_006503792.1| photosystem I assembly protein Ycf3 (chloroplast) [Datura
           stramonium] gi|350996427|gb|AEQ36939.1| photosystem I
           assembly protein Ycf3 (chloroplast) [Datura stramonium]
           gi|350996579|gb|AEQ37090.1| photosystem I assembly
           protein Ycf3 [Datura stramonium]
          Length = 170

 Score =  109 bits (273), Expect = 2e-21
 Identities = 51/53 (96%), Positives = 51/53 (96%)
 Frame = -3

Query: 527 YSDRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           YS RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 118 YSGRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 170


>ref|XP_003620942.1| Photosystem I assembly protein Ycf3 [Medicago truncatula]
           gi|355495957|gb|AES77160.1| Photosystem I assembly
           protein Ycf3 [Medicago truncatula]
          Length = 70

 Score =  105 bits (263), Expect(2) = 3e-21
 Identities = 49/54 (90%), Positives = 51/54 (94%)
 Frame = -3

Query: 530 TYSDRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           TYSDRGEQAI+QGDSEIAE+WFDQAAEYWKQAIALTPGNYIEA NWLKIT R E
Sbjct: 17  TYSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLKITGRFE 70



 Score = 24.3 bits (51), Expect(2) = 3e-21
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 564 ETLKYGSKERNHL 526
           ETLKYGSK RN L
Sbjct: 4   ETLKYGSKGRNLL 16


>ref|XP_003599571.1| Photosystem I assembly protein Ycf3 [Medicago truncatula]
           gi|355488619|gb|AES69822.1| Photosystem I assembly
           protein Ycf3 [Medicago truncatula]
          Length = 160

 Score =  106 bits (264), Expect = 2e-20
 Identities = 52/71 (73%), Positives = 58/71 (81%), Gaps = 6/71 (8%)
 Frame = -3

Query: 563 KLSSTVLRKGT------TYSDRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEA 402
           ++S   L+ G+      TYSDRGEQAI+QGDSEIAE+WFDQAAEYWKQAIALTPGNYIEA
Sbjct: 90  RMSQETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEA 149

Query: 401 HNWLKITRRVE 369
            NWLKIT R E
Sbjct: 150 QNWLKITGRFE 160


>ref|YP_538849.1| photosystem I assembly protein Ycf3 [Solanum bulbocastanum]
           gi|122232537|sp|Q2MII6.1|YCF3_SOLBU RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|84371896|gb|ABC56214.1| photosystem I assembly
           protein ycf3 [Solanum bulbocastanum]
          Length = 168

 Score =  105 bits (263), Expect = 3e-20
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|YP_635640.1| photosystem I assembly protein Ycf3 [Solanum tuberosum]
           gi|122248895|sp|Q2VEH6.1|YCF3_SOLTU RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|82754628|gb|ABB90042.1| photosystem I assembly
           protein ycf3 [Solanum tuberosum]
           gi|88656805|gb|ABD47058.1| photosystem I assembly
           protein ycf3 [Solanum tuberosum]
           gi|329124583|gb|AEB72140.1| photosystem I assembly
           protein ycf3 (chloroplast) [Solanum tuberosum]
           gi|329124670|gb|AEB72226.1| photosystem I assembly
           protein ycf3 (chloroplast) [Solanum tuberosum]
          Length = 168

 Score =  105 bits (263), Expect = 3e-20
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|NP_054498.1| photosystem I assembly protein Ycf3 [Nicotiana tabacum]
           gi|78102534|ref|YP_358675.1| photosystem I assembly
           protein Ycf3 [Nicotiana sylvestris]
           gi|81301565|ref|YP_398862.1| photosystem I assembly
           protein Ycf3 [Nicotiana tomentosiformis]
           gi|351653878|ref|YP_004891603.1| ycf3 gene product
           (chloroplast) [Nicotiana undulata]
           gi|404474526|ref|YP_006666031.1| photosystem I assembly
           protein ycf3 (chloroplast) [Capsicum annuum]
           gi|140285|sp|P12204.1|YCF3_TOBAC RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|122226850|sp|Q3C1H7.1|YCF3_NICSY RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|122245643|sp|Q33C35.1|YCF3_NICTO RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|2924263|emb|CAA77415.1| Ycf3 protein [Nicotiana
           tabacum] gi|77799561|dbj|BAE46650.1| hypothetical
           protein [Nicotiana sylvestris]
           gi|80750924|dbj|BAE48000.1| hypothetical protein
           [Nicotiana tomentosiformis] gi|347453904|gb|AEO95562.1|
           hypothetical chloroplast RF34 (chloroplast) [Nicotiana
           undulata] gi|347454015|gb|AEO95672.1| hypothetical
           chloroplast RF34 [synthetic construct]
           gi|401065933|gb|AFP90777.1| photosystem I assembly
           protein ycf3 (chloroplast) [Capsicum annuum]
          Length = 168

 Score =  105 bits (263), Expect = 3e-20
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|NP_783233.1| photosystem I assembly protein Ycf3 [Atropa belladonna]
           gi|39932533|sp|Q8S8X3.1|YCF3_ATRBE RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|20068332|emb|CAC88045.1| ycf3 protein [Atropa
           belladonna]
          Length = 168

 Score =  105 bits (263), Expect = 3e-20
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|AEX37307.1| photosystem I assembly protein Ycf3 (chloroplast) [Arbutus unedo]
          Length = 168

 Score =  105 bits (263), Expect = 3e-20
 Identities = 49/50 (98%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|YP_740651.1| photosystem I assembly protein ycf3 [Nandina domestica]
           gi|122165960|sp|Q09FW0.1|YCF3_NANDO RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|114054471|gb|ABI49864.1| photosystem I assembly
           protein ycf3 [Nandina domestica]
          Length = 168

 Score =  104 bits (260), Expect = 7e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAIQQGDSEIAE+WFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIQQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|YP_008963481.1| hypothetical chloroplast RF34 (chloroplast) [Penthorum chinense]
           gi|403226782|gb|AFR25661.1| hypothetical chloroplast
           RF34 (chloroplast) [Penthorum chinense]
          Length = 169

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 169


>gb|AFK81300.1| hypothetical chloroplast RF34 [Camellia sinensis var. assamica]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|AGW04976.1| photosystem I assembly protein [Vincetoxicum rossicum]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|AGW04519.1| photosystem I assembly protein [Eustegia minuta]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>ref|YP_008592489.1| photosystem I assembly protein Ycf3 (chloroplast) [Andrographis
           paniculata] gi|532164837|gb|AGT79847.1| photosystem I
           assembly protein Ycf3 (chloroplast) [Andrographis
           paniculata]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|AGQ50350.1| hypothetical chloroplast RF34 (chloroplast) [Rumex acetosa]
          Length = 169

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 169


>ref|YP_007890374.1| hypothetical chloroplast RF34 (chloroplast) [Ardisia polysticta]
           gi|456367971|gb|AGG36885.1| hypothetical chloroplast
           RF34 (chloroplast) [Ardisia polysticta]
          Length = 169

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 120 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 169


>ref|YP_008578540.1| photosystem I assembly protein (chloroplast) [Asclepias nivea]
           gi|545907193|ref|YP_008578625.1| photosystem I assembly
           protein (chloroplast) [Asclepias syriaca]
           gi|326200282|gb|ADZ52321.1| photosystem I assembly
           protein [Asclepias syriaca] gi|355331725|gb|AER52414.1|
           photosystem I assembly protein [Asclepias albicans]
           gi|355331808|gb|AER52496.1| photosystem I assembly
           protein [Asclepias albicans] gi|355331974|gb|AER52660.1|
           photosystem I assembly protein [Asclepias cutleri]
           gi|355332057|gb|AER52742.1| photosystem I assembly
           protein [Asclepias cutleri] gi|355332139|gb|AER52823.1|
           photosystem I assembly protein [Asclepias leptopus]
           gi|355332382|gb|AER53063.1| photosystem I assembly
           protein [Asclepias masonii] gi|355332465|gb|AER53145.1|
           photosystem I assembly protein [Asclepias subaphylla]
           gi|355332548|gb|AER53227.1| photosystem I assembly
           protein [Asclepias subaphylla]
           gi|355332627|gb|AER53305.1| photosystem I assembly
           protein [Asclepias subulata] gi|355332710|gb|AER53387.1|
           photosystem I assembly protein [Asclepias subulata]
           gi|355332793|gb|AER53469.1| photosystem I assembly
           protein [Asclepias albicans x Asclepias subulata]
           gi|544186340|gb|AGW04288.1| photosystem I assembly
           protein [Secamone afzelii] gi|544186418|gb|AGW04365.1|
           photosystem I assembly protein [Araujia sericifera]
           gi|544186496|gb|AGW04442.1| photosystem I assembly
           protein [Astephanus triflorus]
           gi|544186647|gb|AGW04591.1| photosystem I assembly
           protein [Marsdenia astephanoides]
           gi|544186803|gb|AGW04745.1| photosystem I assembly
           protein [Orthosia scoparia] gi|544187109|gb|AGW05047.1|
           photosystem I assembly protein (chloroplast) [Asclepias
           nivea] gi|544187210|gb|AGW05138.1| photosystem I
           assembly protein (chloroplast) [Asclepias syriaca]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|ADD30872.1| putative RF3 protein [Heuchera sanguinea]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168


>gb|ADD30856.1| putative RF3 protein [Dillenia indica]
          Length = 168

 Score =  104 bits (259), Expect = 9e-20
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = -3

Query: 518 RGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRVE 369
           RGEQAI+QGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRRFE 168