BLASTX nr result
ID: Cocculus22_contig00000282
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00000282
(424 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK96567.1| unknown [Populus trichocarpa x Populus deltoides] 134 2e-29
ref|XP_006383456.1| Ribulose bisphosphate carboxylase small chai... 134 2e-29
gb|ABK96590.1| unknown [Populus trichocarpa x Populus deltoides] 134 2e-29
gb|AFS41744.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 132 6e-29
gb|AFS41729.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 132 6e-29
gb|AFS41724.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 132 6e-29
gb|AEX60841.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 132 6e-29
gb|AEX60836.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 132 6e-29
ref|XP_007033270.1| Ribulose bisphosphate carboxylase (small cha... 129 3e-28
ref|XP_007033269.1| Ribulose bisphosphate carboxylase (small cha... 129 3e-28
ref|XP_006430779.1| hypothetical protein CICLE_v10012893mg [Citr... 129 4e-28
ref|XP_006430778.1| hypothetical protein CICLE_v10012893mg [Citr... 129 4e-28
dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 129 4e-28
ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chai... 129 4e-28
sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carbox... 129 5e-28
gb|AFS41756.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 129 5e-28
gb|AFS41727.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 129 5e-28
gb|AEX60835.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 129 5e-28
sp|O22077.1|RBS_FAGCR RecName: Full=Ribulose bisphosphate carbox... 128 7e-28
sp|Q96542.1|RBS_BETVE RecName: Full=Ribulose bisphosphate carbox... 128 7e-28
>gb|ABK96567.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 181
Score = 134 bits (336), Expect = 2e-29
Identities = 68/78 (87%), Positives = 72/78 (92%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+AAVA VNRTP AQA+MVAPF GLKS SAFPVTRK+ NDITSIASNGGRVQCM
Sbjct: 1 MASSVISSAAVATVNRTP-AQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCM 59
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPP GLKKFETLSYLP
Sbjct: 60 QVWPPTGLKKFETLSYLP 77
>ref|XP_006383456.1| Ribulose bisphosphate carboxylase small chain 1A family protein
[Populus trichocarpa] gi|118488169|gb|ABK95904.1|
unknown [Populus trichocarpa]
gi|118488741|gb|ABK96181.1| unknown [Populus
trichocarpa] gi|550339067|gb|ERP61253.1| Ribulose
bisphosphate carboxylase small chain 1A family protein
[Populus trichocarpa]
Length = 181
Score = 134 bits (336), Expect = 2e-29
Identities = 68/78 (87%), Positives = 72/78 (92%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+AAVA VNRTP AQA+MVAPF GLKS SAFPVTRK+ NDITSIASNGGRVQCM
Sbjct: 1 MASSVISSAAVATVNRTP-AQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCM 59
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPP GLKKFETLSYLP
Sbjct: 60 QVWPPTGLKKFETLSYLP 77
>gb|ABK96590.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 189
Score = 134 bits (336), Expect = 2e-29
Identities = 68/78 (87%), Positives = 72/78 (92%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+AAVA VNRTP AQA+MVAPF GLKS SAFPVTRK+ NDITSIASNGGRVQCM
Sbjct: 1 MASSVISSAAVATVNRTP-AQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCM 59
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPP GLKKFETLSYLP
Sbjct: 60 QVWPPTGLKKFETLSYLP 77
>gb|AFS41744.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium tomentosum]
Length = 182
Score = 132 bits (331), Expect = 6e-29
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VNR+ AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AFS41729.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366478|gb|AFS41736.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium barbadense] gi|406366508|gb|AFS41751.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium mustelinum]
Length = 182
Score = 132 bits (331), Expect = 6e-29
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VNR+ AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AFS41724.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium raimondii]
Length = 182
Score = 132 bits (331), Expect = 6e-29
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VNR+ AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AEX60841.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366462|gb|AFS41728.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium hirsutum] gi|406366476|gb|AFS41735.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium barbadense]
gi|406366492|gb|AFS41743.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium tomentosum] gi|406366506|gb|AFS41750.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium mustelinum]
gi|406366520|gb|AFS41757.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium darwinii]
Length = 182
Score = 132 bits (331), Expect = 6e-29
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VNR+ AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AEX60836.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium raimondii]
Length = 168
Score = 132 bits (331), Expect = 6e-29
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VNR+ AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNRSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>ref|XP_007033270.1| Ribulose bisphosphate carboxylase (small chain) family protein
isoform 2 [Theobroma cacao] gi|508712299|gb|EOY04196.1|
Ribulose bisphosphate carboxylase (small chain) family
protein isoform 2 [Theobroma cacao]
Length = 184
Score = 129 bits (325), Expect = 3e-28
Identities = 64/78 (82%), Positives = 68/78 (87%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A VA VNR AQASMVAPFTGLKS SA PV RK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATVATVNRASPAQASMVAPFTGLKSTSALPVARKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>ref|XP_007033269.1| Ribulose bisphosphate carboxylase (small chain) family protein
isoform 1 [Theobroma cacao] gi|508712298|gb|EOY04195.1|
Ribulose bisphosphate carboxylase (small chain) family
protein isoform 1 [Theobroma cacao]
Length = 189
Score = 129 bits (325), Expect = 3e-28
Identities = 64/78 (82%), Positives = 68/78 (87%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A VA VNR AQASMVAPFTGLKS SA PV RK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATVATVNRASPAQASMVAPFTGLKSTSALPVARKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>ref|XP_006430779.1| hypothetical protein CICLE_v10012893mg [Citrus clementina]
gi|557532836|gb|ESR44019.1| hypothetical protein
CICLE_v10012893mg [Citrus clementina]
Length = 182
Score = 129 bits (324), Expect = 4e-28
Identities = 63/78 (80%), Positives = 69/78 (88%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A VA NR AQASMVAPFTGLKS+SAFP T+K+ NDITSIASNGGRVQCM
Sbjct: 1 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
+VWPP GLKKFETLSYLP
Sbjct: 61 KVWPPTGLKKFETLSYLP 78
>ref|XP_006430778.1| hypothetical protein CICLE_v10012893mg [Citrus clementina]
gi|557532835|gb|ESR44018.1| hypothetical protein
CICLE_v10012893mg [Citrus clementina]
Length = 142
Score = 129 bits (324), Expect = 4e-28
Identities = 63/78 (80%), Positives = 69/78 (88%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A VA NR AQASMVAPFTGLKS+SAFP T+K+ NDITSIASNGGRVQCM
Sbjct: 1 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
+VWPP GLKKFETLSYLP
Sbjct: 61 KVWPPTGLKKFETLSYLP 78
>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 181
Score = 129 bits (324), Expect = 4e-28
Identities = 66/78 (84%), Positives = 71/78 (91%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS++S+AAVAAVNR AQASMVAPFTGLKS SAFPVTRKS DITS+ASNGGRVQCM
Sbjct: 1 MASSIVSSAAVAAVNRASPAQASMVAPFTGLKSASAFPVTRKSA-DITSLASNGGRVQCM 59
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPP+G KKFETLSYLP
Sbjct: 60 QVWPPIGKKKFETLSYLP 77
>ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chain, chloroplast
precursor, putative [Ricinus communis]
gi|223528159|gb|EEF30223.1| Ribulose bisphosphate
carboxylase small chain, chloroplast precursor, putative
[Ricinus communis]
Length = 185
Score = 129 bits (324), Expect = 4e-28
Identities = 62/78 (79%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS++STA VA++NR AQASMVAPFTGLKS SAFPVTRK+ DIT++A+NGGRVQCM
Sbjct: 1 MASSMLSTATVASLNRASPAQASMVAPFTGLKSTSAFPVTRKTNTDITTLANNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor gi|450505|emb|CAA38026.1| ribulose
bisphosphate carboxylase [Gossypium hirsutum]
gi|371942044|gb|AEX60834.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium hirsutum] gi|406366448|gb|AFS41721.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium arboreum]
gi|406366458|gb|AFS41726.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium hirsutum] gi|406366488|gb|AFS41741.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium tomentosum]
gi|406366504|gb|AFS41749.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium mustelinum] gi|406366516|gb|AFS41755.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium darwinii]
Length = 182
Score = 129 bits (323), Expect = 5e-28
Identities = 63/78 (80%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VN + AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AFS41756.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium darwinii]
Length = 182
Score = 129 bits (323), Expect = 5e-28
Identities = 63/78 (80%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VN + AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AFS41727.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
(chloroplast) [Gossypium hirsutum]
gi|406366474|gb|AFS41734.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit (chloroplast)
[Gossypium barbadense] gi|406366490|gb|AFS41742.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit (chloroplast) [Gossypium tomentosum]
Length = 182
Score = 129 bits (323), Expect = 5e-28
Identities = 63/78 (80%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VN + AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>gb|AEX60835.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit,
partial (chloroplast) [Gossypium herbaceum]
Length = 171
Score = 129 bits (323), Expect = 5e-28
Identities = 63/78 (80%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A +A VN + AQA+MVAPFTGLKS SAFPVTRK+ NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLG KKFETLSYLP
Sbjct: 61 QVWPPLGKKKFETLSYLP 78
>sp|O22077.1|RBS_FAGCR RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor gi|2588890|dbj|BAA23214.1| small subunit of
ribulose-1,5-bisphosphate carboxylase/oxygenase [Fagus
crenata]
Length = 182
Score = 128 bits (322), Expect = 7e-28
Identities = 62/78 (79%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MASS+IS+A VA V+R AQA+MVAPFTGLKS +AFP TRKS NDITS+ASNGGRVQCM
Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
+VWPPLGL+KFETLSYLP
Sbjct: 61 KVWPPLGLQKFETLSYLP 78
>sp|Q96542.1|RBS_BETVE RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor gi|1536889|emb|CAA69102.1|
ribulose-bisphosphate carboxylase [Betula pendula]
Length = 182
Score = 128 bits (322), Expect = 7e-28
Identities = 64/78 (82%), Positives = 70/78 (89%)
Frame = -1
Query: 235 MASSLISTAAVAAVNRTPQAQASMVAPFTGLKSNSAFPVTRKSGNDITSIASNGGRVQCM 56
MA S+IS+A VAAV+R AQ+SMVAPFT LKS SAFPVT+K+ NDITSIASNGGRVQCM
Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60
Query: 55 QVWPPLGLKKFETLSYLP 2
QVWPPLGLKKFETLSYLP
Sbjct: 61 QVWPPLGLKKFETLSYLP 78