BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00000258
         (14,358 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]...  2349   0.0  
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife...  2349   0.0  
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ...  2340   0.0  
ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic...  2339   0.0  
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...  2333   0.0  
gb|ADD31155.1| RNA polymerase beta'' subunit protein [Meliosma a...  2323   0.0  
ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis...  2323   0.0  
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden...  2306   0.0  
ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [...  2291   0.0  
ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [...  2290   0.0  
ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) ...  2290   0.0  
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb...  2289   0.0  
gb|AEX98324.1| RNA polymerase beta subunit-2 (chloroplast) [Magn...  2289   0.0  
ref|YP_006576105.1| RpoC2 (chloroplast) [Magnolia denudata] gi|3...  2289   0.0  
ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwang...  2289   0.0  
ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia trip...  2288   0.0  
ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [...  2288   0.0  
ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) ...  2288   0.0  
ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) ...  2288   0.0  
ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [...  2287   0.0  

>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
             gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
             [Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA polymerase
             beta'' subunit (chloroplast) [Nelumbo lutea]
          Length = 1390

 Score = 2349 bits (6088), Expect = 0.0
 Identities = 1191/1391 (85%), Positives = 1251/1391 (89%), Gaps = 5/1391 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK IDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLV+DAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLVRDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMTER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMTER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             IFIQTL+GRVLADDIY+G RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC
Sbjct: 243   IFIQTLMGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AE VRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKE+VRKHIYSD+EGEMHWSTDVYHAP+YTYGNVHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSG-KKAGRI 8453
             GSP  S++V F LHKDQDQM+VHSLS E  YISNLSVTNDQVRHKLFSSDPS  KK  RI
Sbjct: 483   GSPCRSNIVPFSLHKDQDQMSVHSLSVEGRYISNLSVTNDQVRHKLFSSDPSSCKKGERI 542

Query: 8454  LDYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISM 8633
             LD+SG D+IIC GHCNFIYPA LH +SDLLAKRRRNRFIIPF+SNQE+EKEL+PR+GIS+
Sbjct: 543   LDFSGPDRIICNGHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRAGISI 602

Query: 8634  EIPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQ 8813
             EIPINGIFRRNSILAYFDDPRYRRNSSG+TKYGT  VHSIVKK+ LIEYR  KEFR KYQ
Sbjct: 603   EIPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKEDLIEYRRAKEFRPKYQ 662

Query: 8814  KKIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXX 8993
             KK+DRFFFIPEEVHILPGSSSI+V+NNSIIGVDTRIT N RS+V                
Sbjct: 663   KKVDRFFFIPEEVHILPGSSSILVRNNSIIGVDTRITLNTRSRVGGLVRVERKKKKIELK 722

Query: 8994  XFSGDIHFPGETDKISWHSGILIPPGT-GXXXXXXXXXXXXXIYVQRITPSKKKYFVLVR 9170
              FSGDIHFPGETDKIS HSGILIPPG                IY+QRITP+KKK+FVLVR
Sbjct: 723   IFSGDIHFPGETDKISRHSGILIPPGAEKKNSKESKTKLKNWIYIQRITPTKKKFFVLVR 782

Query: 9171  PAVTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLV 9350
             P VTYE+ADG+NLATLFP+D LQERDNVQLRVVNYILYGNGKPIRGISH +IQLVRTCLV
Sbjct: 783   PVVTYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNGKPIRGISHTSIQLVRTCLV 842

Query: 9351  LNWDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISV 9530
             LNWDQDKKGSS  IE VHAS VEVR   LIRDFI+MDL K PISY GKRN+P GSGLIS 
Sbjct: 843   LNWDQDKKGSS--IEEVHASLVEVRANDLIRDFIRMDLAKSPISYIGKRNDPAGSGLISD 900

Query: 9531  NRSDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFR--IGPFNGL 9704
             NRSDRTN NPF+SKARIQQSL+QHQ TIR L NRNKECQSLIILSSSNC R  IGPFNGL
Sbjct: 901   NRSDRTNRNPFYSKARIQQSLSQHQGTIRTLLNRNKECQSLIILSSSNCSRIGIGPFNGL 960

Query: 9705  KSNNVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFY-SFYHLITHNQIXXXXXXXXXXX 9881
             K +NVTK+SI  K+  L+ IRNS GPLG VPKI NFY S+YHLITHNQI           
Sbjct: 961   KYHNVTKESI--KRDPLISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNL 1018

Query: 9882  XQAFQVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICEN 10061
              Q FQVLKY L+DENGRI+NPDP SN+I N F+LNWYFLHHDYCEE+STI+ LGQF+CEN
Sbjct: 1019  KQTFQVLKYYLIDENGRIFNPDPCSNIIFNPFNLNWYFLHHDYCEESSTIIRLGQFLCEN 1078

Query: 10062 LCISKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 10241
             +CISKNGPH KSGQVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK
Sbjct: 1079  VCISKNGPHLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 1138

Query: 10242 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQ 10421
             SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVE WNERI RILGI WGFL+GAEL IAQ
Sbjct: 1139  SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEDWNERIARILGIPWGFLIGAELTIAQ 1198

Query: 10422 SRISLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAER 10601
             SRISLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKV+VSEDGMSN FLPGELIGLLRAER
Sbjct: 1199  SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVVVSEDGMSNVFLPGELIGLLRAER 1258

Query: 10602 TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 10781
             TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV
Sbjct: 1259  TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1318

Query: 10782 VLGGMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHD 10961
             VLGGMIPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH +EL   C+PKNFHD
Sbjct: 1319  VLGGMIPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHKELFHFCIPKNFHD 1378

Query: 10962 TSEQSFTGLTE 10994
             TSEQSFTG  +
Sbjct: 1379  TSEQSFTGFND 1389


>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
             gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
             [Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
             polymerase beta'' subunit protein [Nelumbo nucifera]
             gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit
             (chloroplast) [Nelumbo nucifera]
             gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
             (chloroplast) [Nelumbo nucifera]
          Length = 1390

 Score = 2349 bits (6088), Expect = 0.0
 Identities = 1191/1391 (85%), Positives = 1252/1391 (90%), Gaps = 5/1391 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK IDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLV+DAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLVRDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMTER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMTER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             IFIQTL+GRVLADDIY+G RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC
Sbjct: 243   IFIQTLMGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AE VRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKE+VRKHIYSD+EGEMHWSTDVYHAP+YTYGNVHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGISTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSG-KKAGRI 8453
             GSP  S++V F LHKDQDQM+VHSLS E  YISNLSVTNDQVRHKLFSSDPS  KK  RI
Sbjct: 483   GSPCRSNIVPFSLHKDQDQMSVHSLSVEGRYISNLSVTNDQVRHKLFSSDPSSCKKGERI 542

Query: 8454  LDYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISM 8633
             LD+SG D+IIC GHCNFIYPA LH +SDLLAKRRRNRFIIPF+SNQE+EKEL+PR+GIS+
Sbjct: 543   LDFSGPDRIICNGHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRAGISI 602

Query: 8634  EIPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQ 8813
             EIPINGIFRRNSILAYFDDPRYRRNSSG+TKYGT  VHSIVKK+ LIEYR  KEFR KYQ
Sbjct: 603   EIPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSIVKKEDLIEYRRAKEFRPKYQ 662

Query: 8814  KKIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXX 8993
             KK+DRFFFIPEEVHILPGSSSI+V+NNSIIGVDTRIT N RS+V                
Sbjct: 663   KKVDRFFFIPEEVHILPGSSSILVRNNSIIGVDTRITLNTRSRVGGLVRVERKKKKIELK 722

Query: 8994  XFSGDIHFPGETDKISWHSGILIPPGT-GXXXXXXXXXXXXXIYVQRITPSKKKYFVLVR 9170
              FSGDIHFPGETDKIS HSGILIPPG                IY+QRITP+KKK+FVLVR
Sbjct: 723   IFSGDIHFPGETDKISRHSGILIPPGAEKKNSKESKTKLKNWIYIQRITPTKKKFFVLVR 782

Query: 9171  PAVTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLV 9350
             P VTYE+ADG+NLATLFP+D LQERDNVQLRVVNYILYGNGKPIRGISH +IQLVRTCLV
Sbjct: 783   PVVTYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNGKPIRGISHTSIQLVRTCLV 842

Query: 9351  LNWDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISV 9530
             LNWDQDKKGSS  IE VHAS VEVR   LIRDFI+MDL K PISY GKRN+P GSGLIS 
Sbjct: 843   LNWDQDKKGSS--IEEVHASLVEVRANDLIRDFIRMDLAKSPISYIGKRNDPAGSGLISD 900

Query: 9531  NRSDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFR--IGPFNGL 9704
             NRSDRTN NPF+SKARIQQSL+QHQ TIR L NRNKECQSLIILSSSNC R  IGPFNGL
Sbjct: 901   NRSDRTNRNPFYSKARIQQSLSQHQGTIRTLLNRNKECQSLIILSSSNCSRIGIGPFNGL 960

Query: 9705  KSNNVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFY-SFYHLITHNQIXXXXXXXXXXX 9881
             K +NVTK+SI  K+  L+ IRNS GPLG VPKI NFY S+YHLITHNQI           
Sbjct: 961   KYHNVTKESI--KRDPLISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNL 1018

Query: 9882  XQAFQVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICEN 10061
              Q FQVLKY L+DENGRI+NPDP SN+I N F+LNWYFLHHDYCEE+STI+SLGQF+CEN
Sbjct: 1019  KQTFQVLKYYLIDENGRIFNPDPCSNIIFNPFNLNWYFLHHDYCEESSTIISLGQFLCEN 1078

Query: 10062 LCISKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 10241
             +CISKNGPH KSGQVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK
Sbjct: 1079  VCISKNGPHLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 1138

Query: 10242 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQ 10421
             SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVE WNERI RILGI WGFL+GAEL IAQ
Sbjct: 1139  SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEDWNERIARILGIPWGFLIGAELTIAQ 1198

Query: 10422 SRISLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAER 10601
             SRISLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKV+VSEDGMSN FLPGELIGLLRAER
Sbjct: 1199  SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVVVSEDGMSNVFLPGELIGLLRAER 1258

Query: 10602 TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 10781
             TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV
Sbjct: 1259  TGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1318

Query: 10782 VLGGMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHD 10961
             VLGG+IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH +EL   C+PKNFHD
Sbjct: 1319  VLGGIIPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHKELFHFCIPKNFHD 1378

Query: 10962 TSEQSFTGLTE 10994
             TSEQSFTG  +
Sbjct: 1379  TSEQSFTGFND 1389


>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides]
             gi|157690196|gb|ABV65785.1| RNA polymerase beta'' subunit
             (chloroplast) [Trochodendron aralioides]
             gi|479279286|gb|AGJ72139.1| RNA polymerase beta'' subunit
             (chloroplast) [Trochodendron aralioides]
          Length = 1381

 Score = 2340 bits (6064), Expect = 0.0
 Identities = 1184/1383 (85%), Positives = 1242/1383 (89%), Gaps = 4/1383 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATS+SLG
Sbjct: 3     VLMAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSLSLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSSILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGIS SPRNGMMTER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISASPRNGMMTER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             IFIQTL+GRVLADDIYIG RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC
Sbjct: 243   IFIQTLMGRVLADDIYIGPRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAEHVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKEKVRKHIYSD++GEMHWSTDVYHAP+YTYGNVHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGTSTLNFKEKVRKHIYSDSKGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V F LHKDQDQMNV SLS ER+YISNLSVTNDQV+HKLFS DPSGKK GRIL
Sbjct: 483   GGPCRSSIVPFSLHKDQDQMNVQSLSVERTYISNLSVTNDQVKHKLFSFDPSGKKGGRIL 542

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG ++IIC GHCNFIYPA LH +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+E
Sbjct: 543   DYSGPNRIICNGHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIE 602

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGIFRRNSILAYFDDPRYRR SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ 
Sbjct: 603   IPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQM 662

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEV+ILPGSSSIMV+NNSIIGVDTRIT N RS+V                 
Sbjct: 663   KVDRFFFIPEEVYILPGSSSIMVRNNSIIGVDTRITLNTRSRVGGLVRVERKKRGIELKI 722

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTG-XXXXXXXXXXXXXIYVQRITPSKKKYFVLVRP 9173
             FSG IHFPGETDKIS HSGILIPPGTG              IYVQRITP KKKYFVLVRP
Sbjct: 723   FSGAIHFPGETDKISRHSGILIPPGTGKKNSKESKKKLKNWIYVQRITPIKKKYFVLVRP 782

Query: 9174  AVTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVL 9353
              VTYE+ADG+NLA LFP+D LQERDN+QLRVVNYILYGNGKPI GISH  IQLVRTCLVL
Sbjct: 783   VVTYEIADGINLARLFPQDLLQERDNLQLRVVNYILYGNGKPIGGISHTRIQLVRTCLVL 842

Query: 9354  NWDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVN 9533
             NWDQDKKGSS  IE VHASFVEVR  GLIRDFI+MDLVK PISYTGKRN+  GSGLI  N
Sbjct: 843   NWDQDKKGSS--IEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDN 900

Query: 9534  RSDRTNLNPF---FSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGL 9704
              SDR N+NPF   +SKA IQQSL+QHQ TIR L NRN ECQSLIILSSSNC R+GPF G 
Sbjct: 901   GSDRININPFYSIYSKASIQQSLSQHQGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGF 960

Query: 9705  KSNNVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXX 9884
             K +NVTK+SI  K+  L+ IR SLGPLG V KI NFYSFYHLITHNQI            
Sbjct: 961   KYHNVTKESI--KRDPLIPIRKSLGPLGTVHKIANFYSFYHLITHNQILVNKYLLLDNLK 1018

Query: 9885  QAFQVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENL 10064
             Q FQ++KY L+DENGRI++PDP SN+ILN FHLNWYFLHHDY E+TSTI+SLGQF+CEN+
Sbjct: 1019  QTFQIIKYYLMDENGRIFHPDPCSNIILNPFHLNWYFLHHDYSEDTSTIISLGQFLCENI 1078

Query: 10065 CISKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKS 10244
             CISKNGPH KSGQVL+VHVD+LVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKS
Sbjct: 1079  CISKNGPHLKSGQVLIVHVDALVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKS 1138

Query: 10245 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQS 10424
             RSGDITQGLPKVEQVLEVRSI+SISMNLEKRVEGWNERITRI+GI WGFL+GAEL IAQS
Sbjct: 1139  RSGDITQGLPKVEQVLEVRSIESISMNLEKRVEGWNERITRIIGIPWGFLIGAELTIAQS 1198

Query: 10425 RISLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERT 10604
             RISLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERT
Sbjct: 1199  RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERT 1258

Query: 10605 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 10784
             GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV
Sbjct: 1259  GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1318

Query: 10785 LGGMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDT 10964
             LGGMIPVGTGFKGL+H S Q++NIPLE +KKNLFEG MRDILFH REL DSC+PKNFHDT
Sbjct: 1319  LGGMIPVGTGFKGLMHHSRQHNNIPLETEKKNLFEGEMRDILFHHRELFDSCIPKNFHDT 1378

Query: 10965 SEQ 10973
             SEQ
Sbjct: 1379  SEQ 1381


>ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
             gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName:
             Full=DNA-directed RNA polymerase subunit beta''; AltName:
             Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
             subunit beta''; Short=RNA polymerase subunit beta''
             gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit
             [Nandina domestica]
          Length = 1377

 Score = 2339 bits (6062), Expect = 0.0
 Identities = 1185/1384 (85%), Positives = 1236/1384 (89%)
 Frame = +3

Query: 6843  MAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 7022
             MAER DLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1     MAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60

Query: 7023  DLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 7202
             DLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61    DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 7203  MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 7382
             MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121   MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 7383  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTERIF 7562
             SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RG SVSPRNG +TERIF
Sbjct: 181   SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTLRGSSVSPRNGTITERIF 240

Query: 7563  IQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 7742
             IQTLIGRVLADDIYIG+RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTC+STSWICRL
Sbjct: 241   IQTLIGRVLADDIYIGSRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCKSTSWICRL 300

Query: 7743  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 7922
             CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNGKI
Sbjct: 301   CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360

Query: 7923  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQVI 8102
             KF EDLVHPTRTRHGHPAFLCYIDLYVTIE QDI HNV IPPKSFLLVQNDQYVESEQVI
Sbjct: 361   KFKEDLVHPTRTRHGHPAFLCYIDLYVTIEGQDIRHNVTIPPKSFLLVQNDQYVESEQVI 420

Query: 8103  AEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILSGS 8282
             AEIRAG ST+NFKE+VRKHIYSD+EGEMHWST VYHAP+YTYGNVHLLPKTSHLWILSG 
Sbjct: 421   AEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTAVYHAPEYTYGNVHLLPKTSHLWILSGG 480

Query: 8283  PYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRILDY 8462
             PY SS+VSF LHKDQDQMNVHSLSAE+  ISNL VTN+QVRHK  SS+PSGKK  RILDY
Sbjct: 481   PYRSSIVSFSLHKDQDQMNVHSLSAEQKSISNLLVTNNQVRHKFLSSEPSGKKGERILDY 540

Query: 8463  SGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIP 8642
             SG ++IIC GHCNFIYPA LH +S LLAKRRRNRFIIPF+ NQEQEKELI RSGIS+EIP
Sbjct: 541   SGPNRIICNGHCNFIYPAILHENSYLLAKRRRNRFIIPFQYNQEQEKELITRSGISIEIP 600

Query: 8643  INGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKI 8822
             INGIFRRNSILAYFDDPRYRRNSSG+TKYGT   HSIVKK+ LIEYR     R KYQ KI
Sbjct: 601   INGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRK----RPKYQTKI 656

Query: 8823  DRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXXFS 9002
             DRFFFIPEEVHILPGSSS+MV+NNSIIGV+TRITF  RS+V                 FS
Sbjct: 657   DRFFFIPEEVHILPGSSSVMVRNNSIIGVNTRITFKTRSRVGGLVRVEKKKKKIELKIFS 716

Query: 9003  GDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPAVT 9182
             GDIHFPGETDKISWHSGILIPPGTG             IYVQRITP+KKKYFVLVRP VT
Sbjct: 717   GDIHFPGETDKISWHSGILIPPGTGKKNSKESKNFKNWIYVQRITPTKKKYFVLVRPVVT 776

Query: 9183  YEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLNWD 9362
             YE+ADG+NLATLFP+DPLQERDNVQLRVVNYILYGNGKPIRGISH NIQLVRTCLVLNWD
Sbjct: 777   YEIADGINLATLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTNIQLVRTCLVLNWD 836

Query: 9363  QDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNRSD 9542
             Q+K GSS  +E VHASFVEVRV  LIRDFI+MDLVK PISYT KRN P GS LI  N SD
Sbjct: 837   QEKNGSS--MEEVHASFVEVRVNNLIRDFIRMDLVKSPISYTRKRNAPAGSELILANGSD 894

Query: 9543  RTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNNVT 9722
              TNLNPF+SKARIQQSLTQHQ TIR L NRNKECQSLI LSSSNCFRIGPF GLK NN+T
Sbjct: 895   YTNLNPFYSKARIQQSLTQHQGTIRTLLNRNKECQSLIFLSSSNCFRIGPFKGLKYNNMT 954

Query: 9723  KKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQVL 9902
             KKS   K+ +LL IRNSLGPLGIVPKI NF SFY+LITHNQI            Q FQ L
Sbjct: 955   KKS--NKRDSLLLIRNSLGPLGIVPKIANFSSFYYLITHNQILINKYLLLDNLKQTFQKL 1012

Query: 9903  KYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISKNG 10082
             KY L+DENGRIYNPDP SNMILN F+ NWYFLHHDYCEETSTI+SLGQF CEN+CISK G
Sbjct: 1013  KYYLMDENGRIYNPDPCSNMILNPFNWNWYFLHHDYCEETSTIISLGQFFCENVCISKYG 1072

Query: 10083 PHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDIT 10262
             PH KSGQV++VHVDSLVIRSAKPYLATPGATVHGHYGEILY+GDTLVTFIYEKSRSGDIT
Sbjct: 1073  PHLKSGQVIIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDIT 1132

Query: 10263 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISLVN 10442
             QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGI WGFL+GAEL IAQSR+SLVN
Sbjct: 1133  QGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRVSLVN 1192

Query: 10443 KIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRALEE 10622
             KIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRALEE
Sbjct: 1193  KIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEE 1252

Query: 10623 AICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIP 10802
             AICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIP
Sbjct: 1253  AICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIP 1312

Query: 10803 VGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQSFT 10982
             VGTGFKGLVH S+Q+SNI LEI+  NLFEG MRDILFH REL  SC+PKNFHDTSEQ FT
Sbjct: 1313  VGTGFKGLVHRSSQHSNISLEIQNTNLFEGGMRDILFHHRELFYSCIPKNFHDTSEQKFT 1372

Query: 10983 GLTE 10994
             G  +
Sbjct: 1373  GFID 1376


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
             gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit
             (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score = 2333 bits (6045), Expect = 0.0
 Identities = 1179/1380 (85%), Positives = 1238/1380 (89%), Gaps = 1/1380 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATS+SLG
Sbjct: 3     VLMAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSLSLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQS ILEKHHHY NVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSSILEKHHHYANVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             IFIQTLIGRVLADDIY+G RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC
Sbjct: 243   IFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKEKVRKHIYSD++GEMHWSTDVYHAP+YTYGNVHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGTSTLNFKEKVRKHIYSDSKGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V F LHKDQDQMNV SLS ER YISNLSVTNDQV+HKLFS DPSGKK GRIL
Sbjct: 483   GGPCRSSIVPFSLHKDQDQMNVQSLSVERRYISNLSVTNDQVKHKLFSLDPSGKKGGRIL 542

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYS  ++IIC GHCNFIYPA LH +SDLLAKRRRNRFIIPF+SNQE+EKEL+PRSGIS+E
Sbjct: 543   DYSAPNRIICNGHCNFIYPAILHENSDLLAKRRRNRFIIPFQSNQEREKELMPRSGISIE 602

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGIFRRNSILAYFDDPRYRR SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ 
Sbjct: 603   IPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGAKEFRPKYQM 662

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEV+ILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 663   KVDRFFFIPEEVYILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKRGIELKI 722

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTG-XXXXXXXXXXXXXIYVQRITPSKKKYFVLVRP 9173
             FSG IHFPGETDKIS HSGILIPPGTG              IYVQRITP+KKKYFVLVRP
Sbjct: 723   FSGAIHFPGETDKISRHSGILIPPGTGKKNSKESKKKLKNWIYVQRITPTKKKYFVLVRP 782

Query: 9174  AVTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVL 9353
              VTYE+ADG+NLA LFP+D LQERDN+QL VVNYILYGNGKPI GISH +IQLVRTCLVL
Sbjct: 783   VVTYEIADGINLARLFPQDLLQERDNLQLPVVNYILYGNGKPIGGISHTSIQLVRTCLVL 842

Query: 9354  NWDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVN 9533
             NWD+DKKGSS  IE VHASFVEVR  GLIRDFI+MDLVK PISYTGKRN+  GSGLI  N
Sbjct: 843   NWDEDKKGSS--IEEVHASFVEVRANGLIRDFIRMDLVKSPISYTGKRNDLSGSGLIPDN 900

Query: 9534  RSDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSN 9713
              SDR N+NPF+SKA IQQ L+QH  TIR L NRN ECQSLIILSSSNC R+GPF G K +
Sbjct: 901   GSDRININPFYSKASIQQLLSQHPGTIRTLLNRNNECQSLIILSSSNCSRMGPFKGFKYH 960

Query: 9714  NVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAF 9893
             NVTK+SI  K+  L+ IR SLGPLGIVPKI NFYSFYHLITHNQI            Q F
Sbjct: 961   NVTKESI--KRDPLIPIRKSLGPLGIVPKIANFYSFYHLITHNQILVNKYLLLDNLKQTF 1018

Query: 9894  QVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCIS 10073
             QV+KY  +DENGRI++PDP SN+ILN FHLNWYFLHHD  E+T+TI+SLGQF+CEN+CIS
Sbjct: 1019  QVIKYYFMDENGRIFHPDPCSNIILNPFHLNWYFLHHDSYEDTATIISLGQFLCENICIS 1078

Query: 10074 KNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSG 10253
             KNGPH KSGQVL+VHVD+LVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSG
Sbjct: 1079  KNGPHLKSGQVLIVHVDALVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSG 1138

Query: 10254 DITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRIS 10433
             DITQGLPKVEQVLEVRSI+SISMNLEKRVEGWNERITRILGI WGFL+GAEL IAQSRIS
Sbjct: 1139  DITQGLPKVEQVLEVRSIESISMNLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRIS 1198

Query: 10434 LVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRA 10613
             LVNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRA
Sbjct: 1199  LVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA 1258

Query: 10614 LEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 10793
             LEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG
Sbjct: 1259  LEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1318

Query: 10794 MIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQ 10973
             MIPVGTGFKGL+H S Q++NIPLE +KKNLFEG MRDILFH REL DSC+PKNFHDTSEQ
Sbjct: 1319  MIPVGTGFKGLMHHSRQHNNIPLETEKKNLFEGEMRDILFHHRELFDSCIPKNFHDTSEQ 1378


>gb|ADD31155.1| RNA polymerase beta'' subunit protein [Meliosma aff. cuneifolia Moore
             333]
          Length = 1377

 Score = 2323 bits (6021), Expect = 0.0
 Identities = 1179/1378 (85%), Positives = 1229/1378 (89%)
 Frame = +3

Query: 6840  LMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGI 7019
             LMAER DLVFHNK IDGTAMKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGI
Sbjct: 4     LMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGI 63

Query: 7020  DDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF 7199
             DDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 64    DDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF 123

Query: 7200  RMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYI 7379
             RMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYI
Sbjct: 124   RMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYI 183

Query: 7380  ISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTERI 7559
             ISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTERI
Sbjct: 184   ISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTERI 243

Query: 7560  FIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICR 7739
             FIQTLIGRVLADDIY+G RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICR
Sbjct: 244   FIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICR 303

Query: 7740  LCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGK 7919
             LCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNGK
Sbjct: 304   LCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGK 363

Query: 7920  IKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQV 8099
             IKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQV
Sbjct: 364   IKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQV 423

Query: 8100  IAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILSG 8279
             IAEIRAG ST+NFKE+VRKHIYSD+EGEMHWSTDVYHAP+YTYGNVHLLPKTSHLWILSG
Sbjct: 424   IAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSG 483

Query: 8280  SPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRILD 8459
              P  SS+  F LHKDQDQ+N+HSLS ER  ISNLSVTNDQVRHKLFSSD SGKK GRILD
Sbjct: 484   GPCRSSIAPFSLHKDQDQINLHSLSVERRSISNLSVTNDQVRHKLFSSDLSGKKRGRILD 543

Query: 8460  YSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEI 8639
             YSG D+IIC  HCNF YP TLH +SDLLAKRRRNRFIIPF+SNQE+EKEL+  SGIS+EI
Sbjct: 544   YSGPDRIICNDHCNFRYPTTLHENSDLLAKRRRNRFIIPFQSNQEREKELMLCSGISIEI 603

Query: 8640  PINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKK 8819
             PING+FRRNSILAYFDDPRYRRNSSG+TKYGT  VHSI+KK+ LIEYR  KEFR KYQ K
Sbjct: 604   PINGLFRRNSILAYFDDPRYRRNSSGITKYGTIEVHSILKKEDLIEYRRVKEFRPKYQMK 663

Query: 8820  IDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXXF 8999
             +DRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRIT N RS+V                 F
Sbjct: 664   VDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITLNTRSRVGGLVRVERKKKKIELKIF 723

Query: 9000  SGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPAV 9179
             SGDIHFPGETDKIS HSGILIPPGT              IYVQRITP+KKKYFVLVRP V
Sbjct: 724   SGDIHFPGETDKISRHSGILIPPGTKKKNSKESKKWKNWIYVQRITPTKKKYFVLVRPVV 783

Query: 9180  TYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLNW 9359
             TYE+ADG+NLATLFP+D LQERDNVQLRVVNYILYGNGKPIRGISH +IQLVRTCLVLNW
Sbjct: 784   TYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNGKPIRGISHTSIQLVRTCLVLNW 843

Query: 9360  DQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNRS 9539
             DQDKK SS  IE VHAS VEVR   LIRDFI+MDLVKPPISYT KRN+P GSGLI  N S
Sbjct: 844   DQDKKDSS--IEEVHASCVEVRAIDLIRDFIRMDLVKPPISYTVKRNDPAGSGLIPDNGS 901

Query: 9540  DRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNNV 9719
             DRTN+NPF+SKARIQQSL+QHQ TIR L NRNKEC SLIILSSSNCFR+G FNGLK +NV
Sbjct: 902   DRTNINPFYSKARIQQSLSQHQGTIRTLLNRNKECHSLIILSSSNCFRMGLFNGLKYHNV 961

Query: 9720  TKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQV 9899
             TK+SIQ  K +L+ IRNSLGPLG VPKI NF   YHLITHNQI            + FQV
Sbjct: 962   TKESIQ--KDSLIPIRNSLGPLGTVPKIANFDLSYHLITHNQILRNKYLLLDNFKKIFQV 1019

Query: 9900  LKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISKN 10079
             LKY L+DENG I NPDP+SN+ILN  +LNWYFLHHDYCEET  I+SLGQFICEN+CI K 
Sbjct: 1020  LKYYLMDENGGINNPDPSSNIILNPVNLNWYFLHHDYCEETPIIISLGQFICENVCIYKK 1079

Query: 10080 GPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 10259
              PH KSGQVL+VHVDSLVIRSAKPYLAT GATVHGHYGEILYEGDTLVTFIYEKSRSGDI
Sbjct: 1080  RPHLKSGQVLIVHVDSLVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1139

Query: 10260 TQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISLV 10439
             TQGLPKVEQVLEVRSIDSISMNLEKRVEGWNE ITRILGI WGFL+GAEL IAQSRISLV
Sbjct: 1140  TQGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFLIGAELTIAQSRISLV 1199

Query: 10440 NKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRALE 10619
             NKIQ +YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGR LE
Sbjct: 1200  NKIQTVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRTLE 1259

Query: 10620 EAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMI 10799
             EAICYRAVLLGITRASLNTQSFISEASFQETARVLA+AALRGRIDWLKGLKENVVLGGMI
Sbjct: 1260  EAICYRAVLLGITRASLNTQSFISEASFQETARVLARAALRGRIDWLKGLKENVVLGGMI 1319

Query: 10800 PVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQ 10973
             PVGTGFKGLVHCS Q+ NIPLEIK KNLF G MRDILFH REL DSC+ KNFHDTSEQ
Sbjct: 1320  PVGTGFKGLVHCSRQHKNIPLEIKTKNLFGGEMRDILFHHRELFDSCIQKNFHDTSEQ 1377


>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
             gi|226933872|gb|ACO92005.1| RNA polymerase beta'' subunit
             [Megaleranthis saniculifolia]
          Length = 1383

 Score = 2323 bits (6019), Expect = 0.0
 Identities = 1186/1388 (85%), Positives = 1241/1388 (89%), Gaps = 4/1388 (0%)
 Frame = +3

Query: 6843  MAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 7022
             MAER DLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQAT+TSISLGID
Sbjct: 1     MAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATSTSISLGID 60

Query: 7023  DLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 7202
             DLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61    DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 7203  MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 7382
             MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121   MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

Query: 7383  SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTERIF 7562
             SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGM+TERIF
Sbjct: 181   SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMITERIF 240

Query: 7563  IQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 7742
             IQTLIGRVLADDIY+G+RCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL
Sbjct: 241   IQTLIGRVLADDIYMGSRCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 300

Query: 7743  CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNGKI 7922
             CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAP NGKI
Sbjct: 301   CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPDNGKI 360

Query: 7923  KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQVI 8102
             KFNEDLVHPTRTRHG+PAFLCYIDLYVTIE QDILHNVNIPPKSF+LV+NDQYVESEQVI
Sbjct: 361   KFNEDLVHPTRTRHGYPAFLCYIDLYVTIEGQDILHNVNIPPKSFILVKNDQYVESEQVI 420

Query: 8103  AEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILSGS 8282
             AEIRA AST+NFKE+VRKHIYSD+EGEMHWST VYHAP+YTYGNVHLLPKTSHLWILSG 
Sbjct: 421   AEIRAEASTLNFKERVRKHIYSDSEGEMHWSTAVYHAPEYTYGNVHLLPKTSHLWILSGV 480

Query: 8283  PYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRILDY 8462
             PY SS+V F LHKDQDQ+N+HSLS+ER YISNLSVTNDQVRHKLF SDPSGKK  R+L Y
Sbjct: 481   PYRSSIVPFSLHKDQDQINIHSLSSERKYISNLSVTNDQVRHKLFRSDPSGKKRERVLYY 540

Query: 8463  SGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISMEIP 8642
             S  D+II  GHCNFIYPA L  +SDLLAKRRRNRFIIPF+SN  QEKE IPRSGIS+EIP
Sbjct: 541   SEPDRIIWNGHCNFIYPAILDDNSDLLAKRRRNRFIIPFQSN--QEKEPIPRSGISIEIP 598

Query: 8643  INGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQKKI 8822
             ING+FRRNSILAYFDDPRYRR SSG+TKYGT  V SIVKK+ LIEYR TKEFR KYQ KI
Sbjct: 599   INGLFRRNSILAYFDDPRYRRKSSGITKYGTIEVDSIVKKEDLIEYRRTKEFRPKYQMKI 658

Query: 8823  DRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXXFS 9002
             DRFFFIPEEVHILPGSSSIMV+NNSIIGV TRITFNIRS+V                 FS
Sbjct: 659   DRFFFIPEEVHILPGSSSIMVRNNSIIGVATRITFNIRSRVGGLVRVEKKKKKIELKIFS 718

Query: 9003  GDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPAVT 9182
             GDI+FPGETDKISWHSGILIPPGT              IYVQR+TP+KKKYFVLVRP VT
Sbjct: 719   GDIYFPGETDKISWHSGILIPPGTVKKNSKESKTLKNWIYVQRVTPTKKKYFVLVRPVVT 778

Query: 9183  YEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLNWD 9362
             YE ADG+NLATLFP+DPLQERDNVQLRVVNYILYGNGKPIRGISH NIQL RTCLVLNWD
Sbjct: 779   YETADGINLATLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTNIQLARTCLVLNWD 838

Query: 9363  QDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNRSD 9542
             QDKKGSS  IE VHASFVEVRV  LIRDFI++DLVK PISYT KRN+  GSGLIS N SD
Sbjct: 839   QDKKGSS--IEEVHASFVEVRVNDLIRDFIRIDLVKLPISYTRKRNDLAGSGLISANGSD 896

Query: 9543  RTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLK--SNN 9716
             RTNLNPF+SKARI+Q L +HQ TIR L NRNKECQSLI LSSSNCFRIG FNGLK  +NN
Sbjct: 897   RTNLNPFYSKARIKQLLIRHQGTIRTLLNRNKECQSLITLSSSNCFRIGLFNGLKYNNNN 956

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             +TKKS   K   LL IRN LGPLGIVPKIT+F+SFY+LITHNQI            Q FQ
Sbjct: 957   MTKKS--KKGDPLLPIRNLLGPLGIVPKITHFFSFYYLITHNQILVNKHSLIDNLKQTFQ 1014

Query: 9897  V--LKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCI 10070
             V  LKY L+DENG IYN DP SNMILNLF+ NWYFLHHDYCEE STI+SLGQF CEN+CI
Sbjct: 1015  VLKLKYYLMDENGIIYNLDPCSNMILNLFNWNWYFLHHDYCEEISTIISLGQFFCENVCI 1074

Query: 10071 SKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRS 10250
             SK GPH KSGQVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRS
Sbjct: 1075  SKYGPHLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRS 1134

Query: 10251 GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRI 10430
             GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGI WGFL+GAEL IAQSRI
Sbjct: 1135  GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRI 1194

Query: 10431 SLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGR 10610
             SLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGR
Sbjct: 1195  SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGR 1254

Query: 10611 ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 10790
             ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG
Sbjct: 1255  ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1314

Query: 10791 GMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSE 10970
             GMIPVGTGFKGLVH  +Q+SNI LEI+KKNLFEG M DILFH +EL DSC  KNFHDT+E
Sbjct: 1315  GMIPVGTGFKGLVHRLSQHSNISLEIEKKNLFEGGMGDILFHHKELFDSCTQKNFHDTAE 1374

Query: 10971 QSFTGLTE 10994
             QSFTG T+
Sbjct: 1375  QSFTGFTD 1382


>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
             gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
             Full=DNA-directed RNA polymerase subunit beta''; AltName:
             Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
             subunit beta''; Short=RNA polymerase subunit beta''
             gi|114054374|gb|ABI49768.1| RNA polymerase beta'' subunit
             [Platanus occidentalis]
          Length = 1387

 Score = 2306 bits (5976), Expect = 0.0
 Identities = 1167/1388 (84%), Positives = 1233/1388 (88%), Gaps = 2/1388 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMT+PSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTNPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT++GISVSPRNGM+TER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTLQGISVSPRNGMITER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITF AQPISIRTPFTCRS SWIC
Sbjct: 243   ILIQTLIGRVLADDIYMGPRCIAARNQDIGIGLVNRFITFGAQPISIRTPFTCRSISWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDI+HNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDIIHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKE+VRKHIYSD+EGEMHWST+VYHAP+YTY +VHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTNVYHAPEYTYSHVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G  Y SS+V   LHKDQDQMNVHSLS ER YISN SVTNDQVRHKLF+S PS KK  RIL
Sbjct: 483   GGSYRSSIVPLSLHKDQDQMNVHSLSVERRYISNFSVTNDQVRHKLFNSYPSSKKGERIL 542

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG+D+IIC GHCNFIYP+ LH +SDLLAKRRRNRFIIPF+SNQE+EKEL+ RS IS+E
Sbjct: 543   DYSGTDRIICNGHCNFIYPSILHENSDLLAKRRRNRFIIPFQSNQEREKELMSRSDISIE 602

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGIFRRNSILAYFDDPRYRRN+SG+TKYGT  VH+IVKK+ LIEYR  KEFR KYQ 
Sbjct: 603   IPINGIFRRNSILAYFDDPRYRRNNSGITKYGTIEVHAIVKKEDLIEYRRAKEFRPKYQM 662

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRIT N RS+V                 
Sbjct: 663   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRITLNARSRVGGLVRVERKKKRIELKI 722

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTG-XXXXXXXXXXXXXIYVQRITPSKKKYFVLVRP 9173
             FSGDIHFPGETDKIS HSGILIPPGTG              IYVQRITP KKKYFV VRP
Sbjct: 723   FSGDIHFPGETDKISRHSGILIPPGTGKKNSKKSKKKLQNWIYVQRITPIKKKYFVFVRP 782

Query: 9174  AVTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVL 9353
              VTYE+ADG+NLATLFP+D LQERDNVQLRVVNYILY NGKPIRGISH  IQLVRTCLVL
Sbjct: 783   VVTYEIADGINLATLFPQDLLQERDNVQLRVVNYILYANGKPIRGISHTTIQLVRTCLVL 842

Query: 9354  NWDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVN 9533
             NWDQ K GSS  I+ VHASFVEVR   LI+DFI+MDLVK  IS+TGKRN+P GSGLI  N
Sbjct: 843   NWDQGKNGSS--IKEVHASFVEVRANDLIQDFIRMDLVKSTISHTGKRNDPAGSGLIPDN 900

Query: 9534  RSDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSN 9713
              SDRTN+NPF+SKARIQQSL++HQ T+R L NRNKECQSLIILSSSNC ++GP N LK +
Sbjct: 901   GSDRTNINPFYSKARIQQSLSRHQGTLRSLLNRNKECQSLIILSSSNCSQMGPLNTLKYH 960

Query: 9714  NVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFY-SFYHLITHNQIXXXXXXXXXXXXQA 9890
             NVTK+SI  K+   + IRNSLGPLG VPKITNFY S+Y LITHNQI            Q 
Sbjct: 961   NVTKESI--KRDPPIPIRNSLGPLGTVPKITNFYSSYYQLITHNQILVSKYLLLANLKQT 1018

Query: 9891  FQVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCI 10070
              QV KY L+DENG+IYNPDP SN+I N F+LNWYFLHHDYCEETSTI+SLGQF CEN+CI
Sbjct: 1019  LQVFKYYLMDENGKIYNPDPCSNIIFNPFNLNWYFLHHDYCEETSTIISLGQFFCENVCI 1078

Query: 10071 SKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRS 10250
             SK GPH KSGQVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILY+GDTLVTFIYEKSRS
Sbjct: 1079  SKKGPHLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRS 1138

Query: 10251 GDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRI 10430
             GDITQGLPKVEQVLEVRSIDSISM LE RVEGWNERITRILGI W +L+GAEL IAQSRI
Sbjct: 1139  GDITQGLPKVEQVLEVRSIDSISMTLENRVEGWNERITRILGIPWEYLIGAELTIAQSRI 1198

Query: 10431 SLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGR 10610
             SLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGL RAERTGR
Sbjct: 1199  SLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLFRAERTGR 1258

Query: 10611 ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 10790
             ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG
Sbjct: 1259  ALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 1318

Query: 10791 GMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSE 10970
             GMIPVGTGFKGLVH S +++NIPLEIKKKNLFEG MRD LFH REL DSC+PKNFHDTS+
Sbjct: 1319  GMIPVGTGFKGLVHRSREHNNIPLEIKKKNLFEGEMRDTLFHHRELFDSCIPKNFHDTSK 1378

Query: 10971 QSFTGLTE 10994
             QSFTG  +
Sbjct: 1379  QSFTGFND 1386


>ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [Magnolia pyramidata]
          Length = 1382

 Score = 2291 bits (5937), Expect = 0.0
 Identities = 1166/1386 (84%), Positives = 1223/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   ILIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE  TI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEAFTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [Magnolia dealbata]
          Length = 1382

 Score = 2290 bits (5935), Expect = 0.0
 Identities = 1164/1386 (83%), Positives = 1225/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCG+IRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGSIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAVLHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RR SILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRKSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASF+EV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFIEVGANDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+ILN F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIILNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH REL+ SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELVSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
             gi|372862833|gb|AEX98909.1| RNA polymerase beta subunit-2
             (chloroplast) [Magnolia grandiflora]
             gi|372863003|gb|AEX99077.1| RNA polymerase beta subunit-2
             (chloroplast) [Magnolia grandiflora]
          Length = 1382

 Score = 2290 bits (5935), Expect = 0.0
 Identities = 1166/1386 (84%), Positives = 1224/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+ RKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERARKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPATLH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPATLHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKRIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKRNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TI    NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTICTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q  Q
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTSQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEETSTI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEETSTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
          Length = 1389

 Score = 2290 bits (5933), Expect = 0.0
 Identities = 1169/1387 (84%), Positives = 1230/1387 (88%), Gaps = 3/1387 (0%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER +LVFHNK IDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WL QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN
Sbjct: 63    IDDLLTIPSKGWLAQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMM ER
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMPER 242

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             IFIQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC
Sbjct: 243   IFIQTLIGRVLADDIYMGPRCIAARNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 302

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 303   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 362

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIES+DILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 363   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDILHNVNIPPKSFLLVQNDQYVESEQ 422

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST+NFKE+VRKHIYSD+EGEMHWSTDVYHAP++TYGNVHLLPKTSHLWILS
Sbjct: 423   VIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILS 482

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SSV  F LHKDQDQMNVHSLS ER YISNLSVTNDQVRHK FSS  SGKK GRI 
Sbjct: 483   GGPCRSSVAPFSLHKDQDQMNVHSLSVERRYISNLSVTNDQVRHKFFSSYFSGKKEGRIP 542

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYS  ++II    CN IYPA L+ +SDLLAKRR+NRFIIPF+S QE+EKEL+PRSGIS+E
Sbjct: 543   DYSELNRIIGTSRCNLIYPAILYENSDLLAKRRKNRFIIPFQSIQEREKELMPRSGISIE 602

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGIFRRNSILAYFDDPRYRR SSG+TKYGT  VHSIVKK+ LIEYRG KEFR KYQ 
Sbjct: 603   IPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQM 662

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGV+T+IT N RS+V                 
Sbjct: 663   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVNTQITLNTRSRVGGLVRVERKKKRIELKI 722

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHFPGETDKIS HSGILIPPGTG             IYVQRITP+KKKYFVLVRP 
Sbjct: 723   FSGDIHFPGETDKISRHSGILIPPGTGKANSKESKKLKSWIYVQRITPTKKKYFVLVRPV 782

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NLATLFP+D LQERDNVQLRVVNYILYGN KPIR IS  +IQLVRTCLVLN
Sbjct: 783   VTYEIADGINLATLFPQDLLQERDNVQLRVVNYILYGNSKPIRRISDTSIQLVRTCLVLN 842

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQDKK SS  IE  HASFVEV+  GLIRDF+++DLVK PISYTGKRN+P GSGLIS + 
Sbjct: 843   WDQDKKSSS--IEEAHASFVEVKTNGLIRDFLRIDLVKSPISYTGKRNDPSGSGLISDSG 900

Query: 9537  SDRTNLNPF---FSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLK 9707
             SDRTN+NPF   +SKARIQQSL+Q+Q TIR L NRNKECQSLIILSSSNC R+GPFN +K
Sbjct: 901   SDRTNINPFYSIYSKARIQQSLSQNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNSVK 960

Query: 9708  SNNVTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQ 9887
              +NV K+SI  KK  L+ IRN LGPLG   +I NFYSFYHLITHNQI            Q
Sbjct: 961   YHNVIKESI--KKDPLIPIRNLLGPLGTALQIANFYSFYHLITHNQILVTNYLQLDNLKQ 1018

Query: 9888  AFQVLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLC 10067
             A QVLKY L+DENGRIYNPDP SN++LN F+LNWYFLHH+YCEETST +SLGQFICEN+C
Sbjct: 1019  A-QVLKYYLMDENGRIYNPDPCSNILLNPFNLNWYFLHHNYCEETSTKMSLGQFICENVC 1077

Query: 10068 ISKNGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 10247
             I+KNGPH KSGQVL+V VD +VIR AKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR
Sbjct: 1078  IAKNGPHLKSGQVLIVQVDYVVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 1137

Query: 10248 SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSR 10427
             SGDITQGLPKVEQVLEVRSIDSISMNLEKRV+GWNE ITRILGI WGFL+GAEL I QSR
Sbjct: 1138  SGDITQGLPKVEQVLEVRSIDSISMNLEKRVKGWNEHITRILGIPWGFLIGAELTIVQSR 1197

Query: 10428 ISLVNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTG 10607
             ISLVNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTG
Sbjct: 1198  ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1257

Query: 10608 RALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 10787
             RALEEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 1258  RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1317

Query: 10788 GGMIPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTS 10967
             GGMIPVGTGFKGLVH S Q++NI LE KKKNLFEG MRDILFH REL DSCV KNFHDTS
Sbjct: 1318  GGMIPVGTGFKGLVHRSRQHNNILLETKKKNLFEGEMRDILFHHRELFDSCVSKNFHDTS 1377

Query: 10968 EQSFTGL 10988
             EQSF GL
Sbjct: 1378  EQSFMGL 1384


>gb|AEX98324.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia denudata]
          Length = 1382

 Score = 2289 bits (5932), Expect = 0.0
 Identities = 1165/1386 (84%), Positives = 1223/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMN+HSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNLHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGQGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKRIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI+MDLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRMDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+S   K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKES--SKEDPVIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG M DILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_006576105.1| RpoC2 (chloroplast) [Magnolia denudata] gi|343887529|gb|AEM65208.1|
             RpoC2 [Magnolia denudata]
          Length = 1382

 Score = 2289 bits (5932), Expect = 0.0
 Identities = 1165/1386 (84%), Positives = 1223/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMN+HSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNLHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGQGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI+MDLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRMDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+S   K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKES--SKEDPVIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG M DILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
             gi|302424170|gb|ADL39046.1| RNA polymerase beta' subunit
             [Magnolia kwangsiensis]
          Length = 1382

 Score = 2289 bits (5932), Expect = 0.0
 Identities = 1165/1386 (84%), Positives = 1222/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADD+Y+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   ILIQTLIGRVLADDLYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKEKVRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKEKVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H  IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTGIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRN+ECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNQECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERIT ILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITGILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia tripetala]
             gi|608608394|gb|AHW51948.1| RNA polymerase beta'' subunit
             [Magnolia tripetala]
          Length = 1382

 Score = 2288 bits (5930), Expect = 0.0
 Identities = 1164/1386 (83%), Positives = 1222/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   ILIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+S G+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSLGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL T FP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGTNDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG + KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTLSKIANFYSSYYLITHNQIFLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [Magnolia sprengeri]
          Length = 1382

 Score = 2288 bits (5930), Expect = 0.0
 Identities = 1165/1386 (84%), Positives = 1223/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMN+HSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNLHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGQGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI+MDLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRMDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+S   K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKES--SKEDPVIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+ILN F LNW FL HDYCEE STI+SLGQFICEN+CI K
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIILNPFDLNWCFLRHDYCEEASTIISLGQFICENVCIFK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG M DILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
             gi|372862411|gb|AEX98492.1| RNA polymerase beta subunit-2
             (chloroplast) [Magnolia officinalis]
          Length = 1382

 Score = 2288 bits (5929), Expect = 0.0
 Identities = 1165/1386 (84%), Positives = 1222/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   ILIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKRIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL T FP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGTNDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFN  KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNDSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQIFLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPCSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
             subsp. biloba] gi|372862494|gb|AEX98574.1| RNA polymerase
             beta subunit-2 (chloroplast) [Magnolia officinalis subsp.
             biloba] gi|372862579|gb|AEX98658.1| RNA polymerase beta
             subunit-2 (chloroplast) [Magnolia officinalis subsp.
             biloba] gi|372862664|gb|AEX98742.1| RNA polymerase beta
             subunit-2 (chloroplast) [Magnolia officinalis subsp.
             biloba]
          Length = 1382

 Score = 2288 bits (5928), Expect = 0.0
 Identities = 1164/1386 (83%), Positives = 1222/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP+NGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPQNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   ILIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMNVHSLS ER YIS+LSVTND+VRHKLFSSDPS KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNVHSLSVERRYISDLSVTNDRVRHKLFSSDPSSKKGKGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKRIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL T FP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTFFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI++DLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGTNDLIRDFIRIDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFN  KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNDSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+SI  K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKESI--KEDPMIPIRNSLGPLGTVSKIANFYSSYYLITHNQIFLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG MRDILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMRDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381


>ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliifera]
          Length = 1382

 Score = 2287 bits (5926), Expect = 0.0
 Identities = 1164/1386 (83%), Positives = 1222/1386 (88%)
 Frame = +3

Query: 6837  VLMAERVDLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 7016
             VLMAER DLVFHNK ID TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG
Sbjct: 3     VLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLG 62

Query: 7017  IDDLLTIPSKAWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 7196
             IDDLLTIPSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PN
Sbjct: 63    IDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPN 122

Query: 7197  FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 7376
             FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY
Sbjct: 123   FRMTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182

Query: 7377  IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMTER 7556
             IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM TE+
Sbjct: 183   IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGM-TEK 241

Query: 7557  IFIQTLIGRVLADDIYIGARCIAIRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWIC 7736
             I+IQTLIGRVLADDIY+G RCIA RNQDIGIGLVNRFITFRAQ I IRTPF CRSTSWIC
Sbjct: 242   IWIQTLIGRVLADDIYMGLRCIATRNQDIGIGLVNRFITFRAQSIYIRTPFICRSTSWIC 301

Query: 7737  RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXXAEHVRAPSNG 7916
             RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR            AEHVRAPSNG
Sbjct: 302   RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNG 361

Query: 7917  KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 8096
             KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ
Sbjct: 362   KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQ 421

Query: 8097  VIAEIRAGASTVNFKEKVRKHIYSDAEGEMHWSTDVYHAPKYTYGNVHLLPKTSHLWILS 8276
             VIAEIRAG ST NFKE+VRKHIYSD+EGEMHWSTDVYHAP+Y YGNVHLLPKTSHLWILS
Sbjct: 422   VIAEIRAGTSTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILS 481

Query: 8277  GSPYTSSVVSFLLHKDQDQMNVHSLSAERSYISNLSVTNDQVRHKLFSSDPSGKKAGRIL 8456
             G P  SS+V+F LHKDQDQMN+HSLS ER YIS+LSVTND+VRHKLFSSDP  KK   IL
Sbjct: 482   GGPCRSSIVTFSLHKDQDQMNLHSLSVERRYISDLSVTNDRVRHKLFSSDPYSKKGQGIL 541

Query: 8457  DYSGSDQIICKGHCNFIYPATLHADSDLLAKRRRNRFIIPFRSNQEQEKELIPRSGISME 8636
             DYSG D+II  GH NF+YPA LH +SDLLAKRRRNRFIIPF+ +QE+EKEL+PRSGIS+E
Sbjct: 542   DYSGPDRIISNGHWNFLYPAILHENSDLLAKRRRNRFIIPFQYDQEREKELMPRSGISIE 601

Query: 8637  IPINGIFRRNSILAYFDDPRYRRNSSGVTKYGTRGVHSIVKKQYLIEYRGTKEFRSKYQK 8816
             IPINGI RRNSILAYFDDPRYRR+SSG+TKYGT  V SIVKK+ LIEYRG KEFR KYQ 
Sbjct: 602   IPINGILRRNSILAYFDDPRYRRSSSGITKYGTIEVDSIVKKEDLIEYRGAKEFRPKYQM 661

Query: 8817  KIDRFFFIPEEVHILPGSSSIMVQNNSIIGVDTRITFNIRSQVXXXXXXXXXXXXXXXXX 8996
             K+DRFFFIPEEVHILPGSSSIMV+NNSIIGVDTRI  N RS+V                 
Sbjct: 662   KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTRIALNTRSRVGGLVRVERKKKKIELKI 721

Query: 8997  FSGDIHFPGETDKISWHSGILIPPGTGXXXXXXXXXXXXXIYVQRITPSKKKYFVLVRPA 9176
             FSGDIHF GETDKIS HSGILIPPGTG             IYVQRITP+KKKYFV VRP 
Sbjct: 722   FSGDIHFTGETDKISRHSGILIPPGTGKLNSKESKKWKNWIYVQRITPTKKKYFVSVRPV 781

Query: 9177  VTYEMADGMNLATLFPKDPLQERDNVQLRVVNYILYGNGKPIRGISHKNIQLVRTCLVLN 9356
             VTYE+ADG+NL TLFP+D LQERDNVQLRVVNYILYGNGKPIRGI H +IQLVRTCLVLN
Sbjct: 782   VTYEIADGINLGTLFPQDLLQERDNVQLRVVNYILYGNGKPIRGIYHTSIQLVRTCLVLN 841

Query: 9357  WDQDKKGSSIDIEGVHASFVEVRVKGLIRDFIKMDLVKPPISYTGKRNNPVGSGLISVNR 9536
             WDQD+ GS   IE VHASFVEV    LIRDFI+MDLVK PISY GKRN+  GSGLI  N 
Sbjct: 842   WDQDRNGS---IEEVHASFVEVGANDLIRDFIRMDLVKSPISYIGKRNDTAGSGLIPDNE 898

Query: 9537  SDRTNLNPFFSKARIQQSLTQHQVTIRMLGNRNKECQSLIILSSSNCFRIGPFNGLKSNN 9716
             SDRTN+N F+SK RI QSLTQHQ TIR   NRNKECQS +ILSSS+C RIGPFNG KS+ 
Sbjct: 899   SDRTNINTFYSKTRI-QSLTQHQGTIRTFLNRNKECQSFLILSSSDCSRIGPFNGSKSHK 957

Query: 9717  VTKKSIQMKKATLLKIRNSLGPLGIVPKITNFYSFYHLITHNQIXXXXXXXXXXXXQAFQ 9896
             VTK+S   K+  ++ IRNSLGPLG V KI NFYS Y+LITHNQI            Q FQ
Sbjct: 958   VTKES--SKEDPVIPIRNSLGPLGTVSKIANFYSSYYLITHNQILLNKYLLLDNLKQTFQ 1015

Query: 9897  VLKYSLLDENGRIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISK 10076
             VLKY L+DENGRIYNPDP SN+I N F LNW FL HDYCEE STI+SLGQFICEN+CISK
Sbjct: 1016  VLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLRHDYCEEASTIISLGQFICENVCISK 1075

Query: 10077 NGPHQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 10256
              GPH KSGQVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD
Sbjct: 1076  YGPHIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1135

Query: 10257 ITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGIHWGFLVGAELIIAQSRISL 10436
             ITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERITRILGI WGFL+GAEL IAQSRISL
Sbjct: 1136  ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIAQSRISL 1195

Query: 10437 VNKIQKIYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNAFLPGELIGLLRAERTGRAL 10616
             VNKIQK+YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSN F PGELIGLLRAERTGRAL
Sbjct: 1196  VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1255

Query: 10617 EEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 10796
             EEAICYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM
Sbjct: 1256  EEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGM 1315

Query: 10797 IPVGTGFKGLVHCSNQYSNIPLEIKKKNLFEGNMRDILFHQRELLDSCVPKNFHDTSEQS 10976
             IPVGTGFKGLVH S Q++NIPLEIKKKNLFEG M DILFH RELL SC+PKNFHDTSEQS
Sbjct: 1316  IPVGTGFKGLVHRSRQHNNIPLEIKKKNLFEGEMGDILFHHRELLSSCIPKNFHDTSEQS 1375

Query: 10977 FTGLTE 10994
             FTG  +
Sbjct: 1376  FTGFND 1381