BLASTX nr result
ID: Cocculus22_contig00000153
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00000153
(5629 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2954 0.0
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 2868 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2867 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2867 0.0
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 2855 0.0
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 2850 0.0
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 2842 0.0
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 2840 0.0
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 2839 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2837 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 2835 0.0
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 2829 0.0
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su... 2825 0.0
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 2823 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2954 bits (7657), Expect = 0.0
Identities = 1459/1536 (94%), Positives = 1507/1536 (98%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQAQ+I+NPK+RLKK+LDACKNK+KCEGGDEIE Q DS+EP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+K +KKNDD EQLPEPVERKQQLSAERVL++LKRISDEDCI LGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+RTSAWHSE+ETGFITPGDT VRIE+GELL+GTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAA ERQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK EFD+VF+YE DDE+WNPS+MLPEHVEDLK+I E RNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD +SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P+V+KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDE+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E+EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQ AIELQLPSYME GLDFG+TPSRSP+TGT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 2868 bits (7436), Expect = 0.0
Identities = 1424/1539 (92%), Positives = 1491/1539 (96%), Gaps = 3/1539 (0%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MDMRFP+SPAEVAKVR+VQFGILSP+EIR MSVV+I+HSET ERGKPKP GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCS+ILADEED +
Sbjct: 61 DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEI-EVQGQDSEEPIKKTR-GGCGAQQPKI 4867
FKQA +I+NPK RLKKVLD CKNKTKCEGGD+I E Q QDSEE +KK R GGCGAQQPKI
Sbjct: 121 FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180
Query: 4866 TIDGMKMVAEFKALKKKNDDQEQ-LPEPVERKQQLSAERVLSILKRISDEDCIALGLNPK 4690
TI+GMKMVAE+K +KKND+QEQ LPEPVERKQQL+AE+VL++LKRI+DEDC LGLNPK
Sbjct: 181 TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240
Query: 4689 YARPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 4510
YARPDWMILQV+ PSVMMDTSSRSEDDLTHQLAM+IRHNENL+RQE+NGAPAH
Sbjct: 241 YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300
Query: 4509 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 4330
IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360
Query: 4329 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 4150
SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420
Query: 4149 IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 3970
IIREDGQRLDLRYLKKS DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421 IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480
Query: 3969 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 3790
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540
Query: 3789 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 3610
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600
Query: 3609 QINLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGP 3430
QINL+R SAWHSE+E+GFITPGDT VRIERGELLSGTLCK+TLGTS+GSLIHVIWEEVGP
Sbjct: 601 QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660
Query: 3429 DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHE 3250
DAARKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETISKAKNEVKELI+AA E
Sbjct: 661 DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720
Query: 3249 RQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 3070
+QLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780
Query: 3069 QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMG 2890
QMTACVGQQNVEGKRIP+GF DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781 QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840
Query: 2889 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2710
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900
Query: 2709 SQKLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEAD 2530
SQKLDSLKMK++EF+ V++YE D E+W+PS+MLPEHVEDLK+I E +NVF+AEVQKLEAD
Sbjct: 901 SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960
Query: 2529 RYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK 2350
R+QLGTEI TTGDNSWPMPVNLKRLIWNAQK FKVDLRRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961 RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020
Query: 2349 VVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLV 2170
VVPGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIE+RFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080
Query: 2169 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1990
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140
Query: 1989 YLKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPD 1810
YLK EVNKTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200
Query: 1809 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRI 1630
EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260
Query: 1629 RIMNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEG 1450
RIMNDEAPKGE QDES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+NKFDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320
Query: 1449 FKPEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1270
FKPEIEWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVI+VLGIEAVRRALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380
Query: 1269 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1090
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440
Query: 1089 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPV 910
+D+LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQQAIELQLPSYME G+DFG+TPSRSP+
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPM 1499
Query: 909 TGTPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
TGTPYHEGMMSP YLLSPN RSSPI+DAQFSPYVGGMAF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2867 bits (7431), Expect = 0.0
Identities = 1418/1536 (92%), Positives = 1479/1536 (96%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RIKNPK+RL+K+LDACKNKTKCEGGDEI+VQGQDS++P+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM AE+KA +KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ A ER L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK EF+++FRYEF+DE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2867 bits (7431), Expect = 0.0
Identities = 1418/1536 (92%), Positives = 1479/1536 (96%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RIKNPK+RL+K+LDACKNKTKCEGGDEI+VQGQDS++P+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM AE+KA +KKNDD EQLPEPVERKQ L+AERVL ILKRI+DEDC LGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ A ER L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK EF+++FRYEF+DE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 2855 bits (7401), Expect = 0.0
Identities = 1408/1537 (91%), Positives = 1482/1537 (96%), Gaps = 1/1537 (0%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSVVQIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQ-DSEEPIKKTRGGCGAQQPKIT 4864
FKQA +I+NPK+RLK++ DACK+K C GGD+++VQ Q D++EP+K+ RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179
Query: 4863 IDGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYA 4684
+DGMKMVAEFKA KKKNDDQEQLPEPVERKQ LSAERVL++LKRISDEDC+ LGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 4683 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4504
RPDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 4503 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 4324
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 4323 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 4144
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 4143 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3964
REDGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 3963 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3784
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 3783 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3604
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599
Query: 3603 NLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDA 3424
NL+R SAWHSEAETGFITPGDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 3423 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQ 3244
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKNEVKELI+ AH++
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719
Query: 3243 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 3064
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 3063 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGR 2884
TACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2883 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2704
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 2703 KLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 2524
KLDSLKMKK EFD VFRYE DDE+W P++MLPEHVEDLK+I E RNVFEAEVQKLEADR+
Sbjct: 900 KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959
Query: 2523 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 2344
QLGTEIATTGDN+WPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 2343 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 2164
PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 2163 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1984
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 1983 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1804
KPEVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 1803 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 1624
V P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF+DDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 1623 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 1444
NDEAPKGE QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKF++N+GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319
Query: 1443 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1264
P+ EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379
Query: 1263 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1084
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAESD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 1083 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 904
YLRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+E GLDFG+TP+RSP++G
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498
Query: 903 TPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
TPYHEGMMSPSYLLSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 2850 bits (7388), Expect = 0.0
Identities = 1411/1536 (91%), Positives = 1472/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RIK+PK+RLKK+LDACKNKTKC+GGDEI+VQGQ+SEEP+KK+RGGCGAQQPK++I
Sbjct: 121 FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM AE+KA +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDED LGLNPKYAR
Sbjct: 181 EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RTSAWHSEAE+G ITPGDT VRIE+GELL+GTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVK+LI A +QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK F YE DDE+WNP +ML EHVEDLK+I E RNVF+AEVQKLE DR Q
Sbjct: 901 LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIA TGDNSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD LS+EAQKNATLFF+ILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEEV
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
N EAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFD NEGFK
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYM+ GLDFG+TPSRSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYHEGMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 2842 bits (7368), Expect = 0.0
Identities = 1404/1536 (91%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FK A RIKNPK+RLKK+LDACKNKTKCEGGDEI+VQ D++EP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQ--DTDEPLKKSRGGCGAQQPKLTI 178
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
DGMKMVAE+KA +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGLNPKYAR
Sbjct: 179 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 239 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 359 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 479 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 539 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RTSAWHSE+ETG ITPGDT VRIE+GELLSGTLCK+ LGTSTGSLIHVIWEEVGPDAA
Sbjct: 599 LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 658
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVKELI A + L
Sbjct: 659 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSL 718
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 719 EPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 778
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 779 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 838
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 839 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 898
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK EFDK F Y FDDE+WNP +MLPEHVEDLK+I E RNVF+AEV KLE DR Q
Sbjct: 899 LDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQ 958
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIA TGDNSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERL+VVP
Sbjct: 959 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVP 1018
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD LS+EAQKNATLFFNILLRSTFASKRVL+EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1019 GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG 1078
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1079 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1138
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEED+DFV+SYYEMPDEEV
Sbjct: 1139 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEV 1198
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+ DLTCIFNDDNAEKLILRIRIM
Sbjct: 1199 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIM 1258
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
N+E PKG+SQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNKFD+NEGFK
Sbjct: 1259 NEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA 1318
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1319 EQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1378
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AE+D+
Sbjct: 1379 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDH 1438
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSY++ GLDFG+TPSRSPV+GT
Sbjct: 1439 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSGT 1497
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
P+ +GMMSP+YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1498 PFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 2840 bits (7361), Expect = 0.0
Identities = 1404/1539 (91%), Positives = 1479/1539 (96%), Gaps = 3/1539 (0%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +IKNPK RLKK+LDACKNKTKCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPK+TI
Sbjct: 121 FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+K +KK+DDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGL+PKYAR
Sbjct: 181 EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQER+GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP I+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+RT+AWH ++E G ITPGDT+VRIE+GELLSGTLCK+TLGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETIS AKNEVK+LIR A ++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK+EFD+VFRYEFDDE WNP++M+ +HVEDL++I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLR--RPSDMHPMEIVEAVDKLQERLKV 2347
LGTEIATTGDN+WPMPVNLKRLIWNAQKTFK+D R R SD+HPME VEAVDKLQERLKV
Sbjct: 961 LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020
Query: 2346 VPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVA 2167
VPGDD LS+EAQKNATLFF ILLRST ASKRVL+EYRL+REAFDWVIGEIE+RFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080
Query: 2166 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1987
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140
Query: 1986 LKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDE 1807
LKPE NKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200
Query: 1806 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIR 1627
EVAPEKISPWLLRIELNREMM+DKKL+MADIAEKIN EF+DDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260
Query: 1626 IMNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGF 1447
IMNDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV+ FDE+EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320
Query: 1446 KPEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1267
K EWMLDTEGVNLLAVMC+E+VDAR+TTSNHLIEVIEV+GIEAVRR+LLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380
Query: 1266 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAES 1087
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440
Query: 1086 DYLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVT 907
DYLRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYME GLDFG+TP+RSPV+
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYME-GLDFGMTPARSPVS 1499
Query: 906 GTPYHEGMMSPSYLLSPNARSSPISD-AQFSPYVGGMAF 793
GTPYH+GMMSP L+SPN R SP D FSPYVGGMAF
Sbjct: 1500 GTPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 2839 bits (7360), Expect = 0.0
Identities = 1401/1537 (91%), Positives = 1474/1537 (95%), Gaps = 1/1537 (0%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEE+ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +IKNPK+RLKK+LDACKNK+KCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPK++I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
DGMKM+AE+K +K+NDDQEQLPEPVERKQ L+AERVLS+LKRISDEDC LGLNPK+AR
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTH LAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+R SAWHSE ETGFITPGDT VRIE+GELLSGTLCK+ LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAK EVK LI A + L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNP-SFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 2524
LDSLKMKKSEFD+VFRY DDE WNP S+MLPEH+EDL++I E+R+VFEAEVQKL+ADRY
Sbjct: 901 LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960
Query: 2523 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 2344
QLGTEIA TGD++WP+PVNLKRLIWNAQKTFKVD RR SD+HP+EIV++VDKLQERLKVV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 2343 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 2164
PG D LS+EAQKNATLFF+ILLRST ASKRVL+EYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 2163 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1984
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 1983 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1804
PE +KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP STIIEED+DFVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200
Query: 1803 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 1624
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 1623 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 1444
MNDE PKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K +KFDE +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 1443 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1264
EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 1263 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1084
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 1083 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 904
YLRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+G
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1499
Query: 903 TPYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
TPYHEGMMSPSYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 TPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2837 bits (7355), Expect = 0.0
Identities = 1396/1536 (90%), Positives = 1477/1536 (96%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +IKNPK+RLKK+LDACKNKTKCEGGD+I+V QD++EP+KK+RGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISD+DC LG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+RT+AWHS++E G ITPGDT+VRIE+GELLSGT+CK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKN VKELIR A ++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFD+VF+YE DDE+WNP++M +H++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIATTGD+SWP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD LS+EAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE+
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
+PEKISPWLLRIELNREMMVDKKL+MADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KV+KFDENEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
EWMLDTEGVNLLAVMC+E+VDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDC+LYLND ML+ AIELQLPSYM+ GLDFG+TP+RSPV+ T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMD-GLDFGMTPARSPVSVT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSPSYLLSP+ R SP +DAQFSPYV GM F
Sbjct: 1500 PYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 2835 bits (7349), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 2835 bits (7349), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 2835 bits (7349), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 2835 bits (7349), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 2835 bits (7349), Expect = 0.0
Identities = 1398/1536 (91%), Positives = 1475/1536 (96%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RI+NPK+RLKK+LDACKNK+KCEGGDEI++ GQD++EP+KK+RGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+R S+WHSE+E G ITPGDT+VRIE+GELL+GTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR A E++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK+EFD+VFRYEFDDE+W P++ML E VEDLK+I E RNVFEAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIATTGD+S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV KFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+ GLDFG+TP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYHEG+MSPSYLLSPN R SP SDAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 2835 bits (7348), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA +I+NPK+RLKK+LDACKNKTKCEGGDEI+V GQD EEP+KK +GGCGAQQPK+TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L RT+AWH++ + G +T GDT+VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ A ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKKSEFDK FR+E D+E+WNP++ML E+++DLK+I E+R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EF+DDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK K+D+NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYME GL+FG+TP+RSPV+GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 2832 bits (7341), Expect = 0.0
Identities = 1393/1536 (90%), Positives = 1473/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RI+NPK+RL+K+LDACKNKTKCEGGDEI+VQGQD+EEP+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
DGMKMVAE+K KKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC+ LGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQ L PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+R SAWH+++E G+ITPGDT VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMEKINETIS AK +VKELI+AA E+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLK KK FD ++ YE DD +WNPS+MLPE VEDLK I EIR+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIA TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD+LSMEAQKNATLFFNILLRS ASKRVLKEYRL+REAF+WV+GEIE+RFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV KFD+NEGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYMEGGL+FG+TP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 2829 bits (7334), Expect = 0.0
Identities = 1391/1536 (90%), Positives = 1472/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RI+NPK+RL+K+LDACKNKTKCEGGDEI+VQG D+EEP+KK+RGGCGAQQPKI+I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
DGMKMVAE+K KKK+DD EQ+PEPVERKQQLSAERVLSILKR+SDEDC+ LGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQ L PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+R SAWH+++E G+ITPGDT VRIE+GELLSGTLCK+TLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMEKINETIS AK +VKELI+AA E+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLK KK FD ++ YE DD +WNPS+MLPE VEDLK I EIR+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
LGTEIA TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
GDD+LSMEAQKNATLFFNILLRS ASKRVLKEYRL+REAF+WV+GEIE+RFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMST+IEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
P+KISPWLLRIELNREMMVDKKLSMADIAEKIN+EF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV KFD+NEGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYMEGGL+FG+TP RSP++GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYH+GMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
X2 [Setaria italica]
Length = 1852
Score = 2825 bits (7322), Expect = 0.0
Identities = 1393/1538 (90%), Positives = 1472/1538 (95%), Gaps = 2/1538 (0%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSV+QIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQ-DSEEPIKKTRGGCGAQQPKIT 4864
FKQA +I+NPK+RLK++ DACK+K C GGD+++VQ Q D++EP+KK RGGCGAQQP IT
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179
Query: 4863 IDGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYA 4684
+DGMKMVAEFKA KKK DDQ+QLPEPVERKQ LSAERVL++LKRISDEDC+ LGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 4683 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4504
RPDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 4503 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 4324
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 4323 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 4144
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 4143 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3964
REDGQRLDLRY+KKSSD HL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 3963 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 3784
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 3783 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3604
TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599
Query: 3603 NLMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDA 3424
NL+R SAWHSE ETGFITPGDT+VRIE+GELLSGTLCK++LGT +GSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659
Query: 3423 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQ 3244
ARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETISKAKNEVKELI+ AHE
Sbjct: 660 ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHENH 719
Query: 3243 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 3064
LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 3063 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGR 2884
TACVGQQNVEGKRIP+GFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2883 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2704
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 2703 KLDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRY 2524
KLDSLKMKK EFD VFRYE DDE+W P++MLPEHV+DLK+I E RNVFEAEVQKLEADR+
Sbjct: 900 KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959
Query: 2523 QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 2344
QLGTEI TTGDNSWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960 QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 2343 PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAP 2164
PGDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIE+RFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 2163 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1984
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 1983 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1804
KPEVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 1803 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRI 1624
+ P+KISPWLLRIELNREMM+DKKLSMADIAEKIN EF+DDL+CIFNDDNA+KLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259
Query: 1623 MNDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFK 1444
ND+APKGE QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFD++EGFK
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319
Query: 1443 PEIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1264
+ EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379
Query: 1263 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1084
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439
Query: 1083 YLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTG 904
LRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+E GLDFG+TP+RSP++G
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498
Query: 903 TPYHEGMMSPSYLLSPNARSSPI-SDAQFSPYVGGMAF 793
TPYHEGMMSPSYLLSPN R+SPI +DA FSPYVG MAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 2823 bits (7317), Expect = 0.0
Identities = 1392/1536 (90%), Positives = 1471/1536 (95%)
Frame = -2
Query: 5400 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5221
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5220 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDLK 5041
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 5040 FKQAQRIKNPKHRLKKVLDACKNKTKCEGGDEIEVQGQDSEEPIKKTRGGCGAQQPKITI 4861
FKQA RI+NPK+RLKK+LDACKNK+KCEGGDEI++ GQD+EE +KK+RGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 4860 DGMKMVAEFKALKKKNDDQEQLPEPVERKQQLSAERVLSILKRISDEDCIALGLNPKYAR 4681
+GMKM+AE+KA +KK+DDQEQLPEPVERKQ LSAERVL +LKRISDEDC LGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4680 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4501
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4500 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4321
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4320 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4141
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4140 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3961
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3960 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3781
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3780 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 3601
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3600 LMRTSAWHSEAETGFITPGDTVVRIERGELLSGTLCKRTLGTSTGSLIHVIWEEVGPDAA 3421
L+R S+WHSE+E G ITPGDT+VRIE+GELL+GTLCK+TLGT +G LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 3420 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAHERQL 3241
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR AHE++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 3240 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3061
EAEPGR+MM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3060 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2881
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2880 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2701
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900
Query: 2700 LDSLKMKKSEFDKVFRYEFDDEHWNPSFMLPEHVEDLKSIPEIRNVFEAEVQKLEADRYQ 2521
LDSLKMKK+EFD+VFRYEFDDE+W P++ML E VEDLK+I E RNVFEAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960
Query: 2520 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2341
L TEIATTGD+S +PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2340 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 2161
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2160 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1981
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1980 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1801
P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1800 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFNDDLTCIFNDDNAEKLILRIRIM 1621
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEF+DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1620 NDEAPKGESQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP 1441
NDEAPKGE QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV KFDEN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1440 EIEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1261
EWMLDTEGVNLLAVMCHEDVD RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1260 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDY 1081
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1080 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGGLDFGVTPSRSPVTGT 901
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+ GLDFG+TP+RSP++GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISGT 1499
Query: 900 PYHEGMMSPSYLLSPNARSSPISDAQFSPYVGGMAF 793
PYHEG+MSPSYLLSPN R SP +DAQFSPYVGGMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535