BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00048280
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|2...   140   8e-32
ref|XP_002521253.1| pentatricopeptide repeat-containing protein,...   132   3e-29
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar...   113   1e-23
ref|XP_002867090.1| pentatricopeptide repeat-containing protein ...   108   6e-22

>ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  140 bits (354), Expect = 8e-32
 Identities = 60/102 (58%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
 Frame = +2

Query: 8   ILLRRIGEELFV-GLSKFKPVDLVGTRLNSPKCHSVRLAISYGLISVSVGKPIVIKKNIR 184
           ILL++IGE++++  L+KF+P+D+   R NSP+ HSV+LAI +GLIS ++G P++++KN R
Sbjct: 683 ILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTR 742

Query: 185 ICSDCHDAAKKISDITNREIVVGDSKIYHHFKDGQCSCGDFW 310
           IC DCH AAKKIS +T REIVVGD+K++HHF+DG CSC D+W
Sbjct: 743 ICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784


>ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539521|gb|EEF41109.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 484

 Score =  132 bits (332), Expect = 3e-29
 Identities = 59/102 (57%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
 Frame = +2

Query: 8   ILLRRIGEELFV-GLSKFKPVDLVGTRLNSPKCHSVRLAISYGLISVSVGKPIVIKKNIR 184
           I++++IG++ +V  +SKF+ VDL+  R NSP  HSV+LAI +GLIS ++GKP+VI+K  R
Sbjct: 383 IIMKKIGKDAYVHSVSKFRLVDLMNKRKNSPANHSVKLAICFGLISTAIGKPVVIRKTTR 442

Query: 185 ICSDCHDAAKKISDITNREIVVGDSKIYHHFKDGQCSCGDFW 310
           IC DCH  AKKIS +T REI++GDSKI+HHF  G CSC D+W
Sbjct: 443 ICEDCHMVAKKISLVTKREIIIGDSKIFHHFNGGSCSCRDYW 484


>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
            chloroplastic [Vitis vinifera]
            gi|297744563|emb|CBI37825.3| unnamed protein product
            [Vitis vinifera]
          Length = 802

 Score =  130 bits (327), Expect = 1e-28
 Identities = 58/102 (56%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
 Frame = +2

Query: 8    ILLRRIGEELFV-GLSKFKPVDLVGTRLNSPKCHSVRLAISYGLISVSVGKPIVIKKNIR 184
            I+ ++IGE+++V  L+KF+P DL   R NS K HS+RLAI +GLIS ++G P++++KNIR
Sbjct: 701  IISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIR 760

Query: 185  ICSDCHDAAKKISDITNREIVVGDSKIYHHFKDGQCSCGDFW 310
            IC  CH  AK+IS+ T REI+V DSKI+HHF  G CSCGD+W
Sbjct: 761  ICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802


>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75098809|sp|O49619.1|PP350_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g35130, chloroplastic; Flags: Precursor
            gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
            thaliana] gi|7270464|emb|CAB80230.1| putative protein
            [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 804

 Score =  113 bits (283), Expect = 1e-23
 Identities = 52/103 (50%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
 Frame = +2

Query: 8    ILLRRIGEE-LFVG-LSKFKPVDLVGTRLNSPKCHSVRLAISYGLISVSVGKPIVIKKNI 181
            ++ R +GEE ++V  +S+ +P  LV +R NSP+ HSVRLA  +GLIS   G+ + ++ N 
Sbjct: 702  VVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNT 761

Query: 182  RICSDCHDAAKKISDITNREIVVGDSKIYHHFKDGQCSCGDFW 310
            RIC  CH+  +K S +T REIVVGDSKI+HHF +G+CSCG++W
Sbjct: 762  RICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804


>ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297312926|gb|EFH43349.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 803

 Score =  108 bits (269), Expect = 6e-22
 Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
 Frame = +2

Query: 8    ILLRRIGEE-----LFVGLSKFKPVDLVGTRLNSPKCHSVRLAISYGLISVSVGKPIVIK 172
            I+ R IGEE         +SK +   L  +R NSP+ HSVRLA  +GLIS   G+ + ++
Sbjct: 698  IVSRMIGEEEEEDSYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTETGRTVTVR 757

Query: 173  KNIRICSDCHDAAKKISDITNREIVVGDSKIYHHFKDGQCSCGDFW 310
             N RIC  CH+  +K S +T REIVVGDSKI+HHF +G+CSCG++W
Sbjct: 758  NNTRICRKCHEFLEKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803