BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00048278
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    61   1e-07
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    61   1e-07
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   1e-07
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    59   3e-07
ref|YP_588300.1| hypothetical protein ZeamMp038 [Zea mays subsp....    57   2e-06

>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1889

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/90 (36%), Positives = 48/90 (53%)
 Frame = +1

Query: 79  RVIDVIFGGDSAGGLFNNSKKLYAREVFNINPEVNKRPRPNPSPVISFSDDDYPSGMFET 258
           RVI+ I GG S G      +K Y R+V ++       P      VISF  +D   G+   
Sbjct: 692 RVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPED-AEGILFP 750

Query: 259 HQDALVITAKIGTNTIKKILIDNGSSVDIL 348
           HQD LV++ +I    ++++LID GSS D+L
Sbjct: 751 HQDPLVVSVEIAQCEVQRVLIDGGSSADVL 780


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 49/90 (54%)
 Frame = +1

Query: 79  RVIDVIFGGDSAGGLFNNSKKLYAREVFNINPEVNKRPRPNPSPVISFSDDDYPSGMFET 258
           RVI+ I GG S G      +K Y R++ ++       P    + VISF  +D   G+   
Sbjct: 209 RVINAITGGSSLGVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTVISFGPED-AEGILFP 267

Query: 259 HQDALVITAKIGTNTIKKILIDNGSSVDIL 348
           HQD LVI+ +I    ++++L+D GSS D+L
Sbjct: 268 HQDPLVISVEIAQCEVQRVLVDGGSSADVL 297


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1980

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%)
 Frame = +1

Query: 79  RVIDVIFGGDSAGGLFNNSKKLYAREVFNINPEVNKRPRPNPSPVISFSDDDYPSGMFET 258
           RVI+ I GG S G      +K Y R+V ++      +P      VISF  +D   G+   
Sbjct: 692 RVINAITGGSSLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTVISFGPED-AEGILFP 750

Query: 259 HQDALVITAKIGTNTIKKILIDNGSSVDIL 348
           HQD LV++ +I    ++++LID GSS D+L
Sbjct: 751 HQDPLVVSVEIAQCEVQRVLIDGGSSADVL 780


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/90 (35%), Positives = 49/90 (54%)
 Frame = +1

Query: 79  RVIDVIFGGDSAGGLFNNSKKLYAREVFNINPEVNKRPRPNPSPVISFSDDDYPSGMFET 258
           RVI+ I GG S G      +K Y R++ ++       P    + VISF  +D   G+   
Sbjct: 43  RVINAITGGSSLGVESKRQRKAYVRQINHVGTSYQSIPPAYSNTVISFGPED-AEGILFP 101

Query: 259 HQDALVITAKIGTNTIKKILIDNGSSVDIL 348
           HQD LVI+ +I    ++++L+D GSS D+L
Sbjct: 102 HQDPLVISVEITQCEVQRVLVDGGSSADVL 131


>ref|YP_588300.1| hypothetical protein ZeamMp038 [Zea mays subsp. mays]
           gi|40795086|gb|AAR91130.1| hypothetical protein
           (mitochondrion) [Zea mays]
          Length = 117

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +1

Query: 160 FNINPEVNKRPRPNPSPVISFSDDDYPSGMFETHQDALVITAKIGTNTIKKILIDNGSSV 339
           F I  +V+K+ RP    VISFSD D   G+   H DA+V+  KIG N +K++L+D GSS 
Sbjct: 3   FPIILQVDKK-RPREGSVISFSDQD-SEGIQRPHDDAIVLVLKIGGNRVKRVLVDTGSSA 60

Query: 340 DIL 348
           DIL
Sbjct: 61  DIL 63