BLASTX nr result
ID: Cnidium21_contig00048043
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00048043
(397 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi... 180 9e-44
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,... 172 2e-41
ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 167 6e-40
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi... 167 8e-40
gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium of... 167 1e-39
>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 180 bits (457), Expect = 9e-44
Identities = 81/113 (71%), Positives = 102/113 (90%)
Frame = +1
Query: 55 WIHRFVIKKVFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNG 234
WI+RFV+K+ F+DNI+++NSLIDMY+RCG I ARQ+F+ MPKRS+V+WNS+IVGFALNG
Sbjct: 245 WINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNG 304
Query: 235 NPEEALEYFNLMRKDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKRVYRI 393
+ EEALE+FNLMRK+GF PDGVSFTGALTACSH+GLVDEG++ F+ MKR +I
Sbjct: 305 HAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKI 357
Score = 62.0 bits (149), Expect = 5e-08
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 32/132 (24%)
Frame = +1
Query: 58 IHRFVIKK-VFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWN---------- 204
IH +V K + +N+ V +L+DMY++CG ++ A +F M R+ V+WN
Sbjct: 113 IHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNG 172
Query: 205 ---------------------SIIVGFALNGNPEEALEYFNLMRKDGFEPDGVSFTGALT 321
S+I GF G E+ALE+F M+ G EPD V+ L
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232
Query: 322 ACSHTGLVDEGI 357
AC++ G + G+
Sbjct: 233 ACANLGALGLGL 244
>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 384
Score = 172 bits (437), Expect = 2e-41
Identities = 78/109 (71%), Positives = 95/109 (87%)
Frame = +1
Query: 55 WIHRFVIKKVFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNG 234
WIHR+V++K FR+N+R+ NSLIDMY+RCG IE ARQ+F M KR++V+WNSIIVGFA NG
Sbjct: 250 WIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANG 309
Query: 235 NPEEALEYFNLMRKDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKR 381
EEALEYF LM+K+GF+PDGVSFTGALTACSH G+VDEG+K F+ MKR
Sbjct: 310 FAEEALEYFGLMQKEGFKPDGVSFTGALTACSHAGMVDEGLKCFDIMKR 358
Score = 65.1 bits (157), Expect = 6e-09
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 33/133 (24%)
Frame = +1
Query: 58 IHRFVIKKVFRD--NIRVNNSLIDMYARCGSIEFAR------------------------ 159
IH +V +K+ D N+ V +L+DMYA+CG ++ AR
Sbjct: 118 IHAYV-RKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNTMIDGYMRN 176
Query: 160 -------QIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMRKDGFEPDGVSFTGAL 318
++F MP++ ++W I GF G+ E+ALE+F M+ EPD V+ L
Sbjct: 177 GETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVL 236
Query: 319 TACSHTGLVDEGI 357
+AC++ G + G+
Sbjct: 237 SACANLGALGLGL 249
>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 167 bits (424), Expect = 6e-40
Identities = 73/113 (64%), Positives = 100/113 (88%)
Frame = +1
Query: 55 WIHRFVIKKVFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNG 234
W+HRFV+ + F+DNI+++NSLIDMY+RCG IEFARQ+F M KR++V+WNSIIVGFA+NG
Sbjct: 248 WVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNG 307
Query: 235 NPEEALEYFNLMRKDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKRVYRI 393
+E+LE+F M+K+GF+PDGVS+TGALTACSH GLV++G++LF+ MK V++I
Sbjct: 308 FADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +1
Query: 109 NSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMRKDGFE 288
N++++ + R G IE A Q+F MP R ++W ++I G +G E+ALE F+ M++ G
Sbjct: 165 NTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
Query: 289 PDGVSFTGALTACSHTGLVDEGI 357
D VS L AC+ G + G+
Sbjct: 225 ADYVSIIAVLAACADLGALTLGL 247
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/96 (30%), Positives = 55/96 (57%)
Frame = +1
Query: 94 NIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMR 273
++ V +LIDMY++C + AR++F N+ ++ V+WN+++ GF NG E A++ F+ M
Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMP 188
Query: 274 KDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKR 381
D +S+T + G ++ ++ F M+R
Sbjct: 189 ----TRDAISWTALINGLLKHGYSEQALECFHQMQR 220
>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 167 bits (423), Expect = 8e-40
Identities = 73/113 (64%), Positives = 100/113 (88%)
Frame = +1
Query: 55 WIHRFVIKKVFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNG 234
W+HRFV+ + F+DNI+++NSLIDMY+RCG IEFARQ+F M KR++V+WNSIIVGFA+NG
Sbjct: 248 WVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNG 307
Query: 235 NPEEALEYFNLMRKDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKRVYRI 393
+E+LE+F M+K+GF+PDGVS+TGALTACSH GLV++G++LF+ MK V++I
Sbjct: 308 FADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +1
Query: 109 NSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMRKDGFE 288
N++++ + R G IE A Q+F MP R ++W ++I G +G E+ALE F+ M++ G
Sbjct: 165 NTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
Query: 289 PDGVSFTGALTACSHTGLVDEGI 357
D VS L AC+ G + G+
Sbjct: 225 ADYVSIIAVLAACADLGALTLGL 247
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/96 (30%), Positives = 55/96 (57%)
Frame = +1
Query: 94 NIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMR 273
++ V +LIDMY++C + AR++F N+ ++ V+WN+++ GF NG E A++ F+ M
Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMP 188
Query: 274 KDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKR 381
D +S+T + G ++ ++ F M+R
Sbjct: 189 ----TRDAISWTALINGLLKHGYSEQALECFHQMQR 220
>gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 167 bits (422), Expect = 1e-39
Identities = 73/113 (64%), Positives = 96/113 (84%)
Frame = +1
Query: 55 WIHRFVIKKVFRDNIRVNNSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNG 234
WIHR+V+ + F++N+RV+NSLID+Y RCG +EFARQ+F M KR+VV+WNS+IVGFA NG
Sbjct: 174 WIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANG 233
Query: 235 NPEEALEYFNLMRKDGFEPDGVSFTGALTACSHTGLVDEGIKLFETMKRVYRI 393
N E+L YF M+++GF+PD V+FTGALTACSH GLV+EG++ F+TMKR YRI
Sbjct: 234 NAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRI 286
Score = 65.1 bits (157), Expect = 6e-09
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +1
Query: 109 NSLIDMYARCGSIEFARQIFKNMPKRSVVTWNSIIVGFALNGNPEEALEYFNLMRKDGFE 288
N++ID Y R G + A ++F M R +++W +++ GF G EEAL +F M+ G +
Sbjct: 91 NTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVK 150
Query: 289 PDGVSFTGALTACSHTGLVDEGI 357
PD V+ AL AC++ G + G+
Sbjct: 151 PDYVAIIAALAACTNLGALSFGL 173