BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047962
         (377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...   148   4e-34
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...   140   1e-31
ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp....    94   1e-17

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  170 bits (431), Expect = 1e-40
 Identities = 81/124 (65%), Positives = 101/124 (81%)
 Frame = +3

Query: 6   SSCPSQLMQVHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNTL 185
           SS PS L Q+HAL+LTTGLSIKN+LIT+LL +  +LGDMSYAR+LFDEMHKPR +LWNT+
Sbjct: 47  SSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLFDEMHKPRPFLWNTI 106

Query: 186 IKGYVKYEIPCQAVGLYREMHILGVRPDPFTFPYVVKACGEFWDAWVGAEVHVVVLKYGL 365
           +KGYVK  IP +AV +Y +M  LGVRPDPFTFP+V+KAC E  + W G  +H  V+K+GL
Sbjct: 107 MKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGL 166

Query: 366 EFIA 377
           EF+A
Sbjct: 167 EFVA 170


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score =  148 bits (374), Expect = 4e-34
 Identities = 68/119 (57%), Positives = 92/119 (77%)
 Frame = +3

Query: 6   SSCPSQLMQVHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNTL 185
           SS P QL ++HA++L TG S KNSL+T+LLEN +V+GDM YAR++FDEMHKPR +LWNTL
Sbjct: 21  SSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTL 80

Query: 186 IKGYVKYEIPCQAVGLYREMHILGVRPDPFTFPYVVKACGEFWDAWVGAEVHVVVLKYG 362
            KGYV+ ++P +++ LY++M  LGVRPD FT+P+VVKA  +  D   G  +H  V+KYG
Sbjct: 81  FKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYG 139


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score =  140 bits (353), Expect = 1e-31
 Identities = 66/121 (54%), Positives = 90/121 (74%)
 Frame = +3

Query: 6   SSCPSQLMQVHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNTL 185
           SS P QL ++HA+++ TG S KNSL+T+LLEN +++GDM YAR++FDEM KPR +LWNTL
Sbjct: 21  SSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTL 80

Query: 186 IKGYVKYEIPCQAVGLYREMHILGVRPDPFTFPYVVKACGEFWDAWVGAEVHVVVLKYGL 365
            KGYV+ ++P ++V LY++M  LGVRPD FT+P+VVKA  +      G  +H  VLK G 
Sbjct: 81  FKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGF 140

Query: 366 E 368
           E
Sbjct: 141 E 141


>ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 47/120 (39%), Positives = 69/120 (57%)
 Frame = +3

Query: 3   HSSCPSQLMQVHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNT 182
           +S+    L Q+H  ++ +GL     L+T+L+     LG + YARKLFDE   P  ++WN 
Sbjct: 65  NSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNA 124

Query: 183 LIKGYVKYEIPCQAVGLYREMHILGVRPDPFTFPYVVKACGEFWDAWVGAEVHVVVLKYG 362
           +I+ Y +  +    V +YR M   GV PD FTFPYV+KAC E  D  +   +H  ++KYG
Sbjct: 125 IIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYG 184


>ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330765|gb|EFH61184.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 45/121 (37%), Positives = 73/121 (60%)
 Frame = +3

Query: 6   SSCPSQLMQVHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNTL 185
           S+  +QL Q+HA +L  GL     LIT+L+      GD+++AR++FD++ +P+ + WN +
Sbjct: 31  STHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAI 90

Query: 186 IKGYVKYEIPCQAVGLYREMHILGVRPDPFTFPYVVKACGEFWDAWVGAEVHVVVLKYGL 365
           I+GY +      A+ +Y +M +  V PD FTFP+++KACG      +G  VH  V + G 
Sbjct: 91  IRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGF 150

Query: 366 E 368
           E
Sbjct: 151 E 151



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 30/92 (32%), Positives = 46/92 (50%)
 Frame = +3

Query: 33  VHALILTTGLSIKNSLITRLLENFIVLGDMSYARKLFDEMHKPRAYLWNTLIKGYVKYEI 212
           +HA ++  GL  +  L+  L   +   G ++ A+ LFD+M  P   LWN +I GY K   
Sbjct: 244 IHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGF 303

Query: 213 PCQAVGLYREMHILGVRPDPFTFPYVVKACGE 308
              A+ L+ EM    VRPD  +    + AC +
Sbjct: 304 AKDAIDLFHEMINKDVRPDTISITSAISACAQ 335