BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047936
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD99221.1| polypepetide with reverse transcriptase and RNas...   100   1e-23
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    97   1e-23
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...    96   2e-23
emb|CAN64628.1| hypothetical protein VITISV_039432 [Vitis vinifera]    96   2e-21
ref|XP_003602418.1| Stomatin-like protein [Medicago truncatula] ...    92   3e-21

>dbj|BAD99221.1| polypepetide with reverse transcriptase and RNaseH domains [Petunia
           x hybrida]
          Length = 389

 Score =  100 bits (249), Expect(2) = 1e-23
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = -1

Query: 358 SVQLLSQYRHMPRTSHLQALVHTLRYVHHTEGQGILLQGSDNLTLQAFSDSDWAACPDSR 179
           +VQ LSQ+   PR+ HL+A  HTLRY+ +  G GI L    +  L  F D+DWA+CPDSR
Sbjct: 184 AVQTLSQHMQSPRSGHLEAAYHTLRYIRNNPGLGIFLSSEQSFQLTGFCDADWASCPDSR 243

Query: 178 RSVTGYVLLLGNSPIVWKSKKQATVS 101
           RS++G+ L +G  P+ WKSKKQ  VS
Sbjct: 244 RSISGFFLTMGGCPLSWKSKKQQVVS 269



 Score = 34.3 bits (77), Expect(2) = 1e-23
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 98  SSAESEYQAMASAASEVTWAVRLLEELGV 12
           SSAE+EY+++    +E+ W VRLL +L V
Sbjct: 271 SSAEAEYRSLRRLVAEIAWIVRLLHDLSV 299


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 97.1 bits (240), Expect(2) = 1e-23
 Identities = 44/86 (51%), Positives = 61/86 (70%)
 Frame = -1

Query: 358  SVQLLSQYRHMPRTSHLQALVHTLRYVHHTEGQGILLQGSDNLTLQAFSDSDWAACPDSR 179
            SV +L+Q+   PR +H  A +  +RY+  + GQGILL    +LTL+ + DSDW +CP +R
Sbjct: 1299 SVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTR 1358

Query: 178  RSVTGYVLLLGNSPIVWKSKKQATVS 101
            RS++ YV+LLG SPI WK+KKQ TVS
Sbjct: 1359 RSISAYVVLLGGSPISWKTKKQDTVS 1384



 Score = 37.4 bits (85), Expect(2) = 1e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = -3

Query: 98   SSAESEYQAMASAASEVTWAVRLLEELGV 12
            SSAE+EY+AM+ A  E+ W  +LL+ELG+
Sbjct: 1386 SSAEAEYRAMSYALKEIKWLRKLLKELGI 1414


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score = 96.3 bits (238), Expect(2) = 2e-23
 Identities = 45/86 (52%), Positives = 64/86 (74%)
 Frame = -1

Query: 358  SVQLLSQYRHMPRTSHLQALVHTLRYVHHTEGQGILLQGSDNLTLQAFSDSDWAACPDSR 179
            SV +LSQ+   PR +HL+A +  +RY+  + GQGILL  + +LTL+ + DSD+ +CP +R
Sbjct: 1289 SVHVLSQFMQAPREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQSCPLTR 1348

Query: 178  RSVTGYVLLLGNSPIVWKSKKQATVS 101
            RS++ YV+LLG SPI WK+KKQ TVS
Sbjct: 1349 RSLSAYVVLLGGSPISWKTKKQDTVS 1374



 Score = 37.7 bits (86), Expect(2) = 2e-23
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -3

Query: 98   SSAESEYQAMASAASEVTWAVRLLEELGVS 9
            SSAE+EY+AM+ A  E+ W  +LL+ELG++
Sbjct: 1376 SSAEAEYRAMSVALKEIKWLNKLLKELGIT 1405


>emb|CAN64628.1| hypothetical protein VITISV_039432 [Vitis vinifera]
          Length = 578

 Score = 95.5 bits (236), Expect(2) = 2e-21
 Identities = 47/86 (54%), Positives = 57/86 (66%)
 Frame = -1

Query: 355 VQLLSQYRHMPRTSHLQALVHTLRYVHHTEGQGILLQGSDNLTLQAFSDSDWAACPDSRR 176
           VQ+LSQ    P  SH QA +  LRY+  T GQG+    S +  L+ FSDSDWA C D+RR
Sbjct: 344 VQVLSQLLAKPAVSHHQATIRVLRYLKATLGQGLFFSFSSDFQLKGFSDSDWAGCVDTRR 403

Query: 175 SVTGYVLLLGNSPIVWKSKKQATVSR 98
           +VTG+ + LGNS I WKSKKQ  VSR
Sbjct: 404 NVTGFAIFLGNSLISWKSKKQVIVSR 429



 Score = 32.0 bits (71), Expect(2) = 2e-21
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 98  SSAESEYQAMASAASEVTWAVRLLEELGVSN 6
           SSAE+EY+A+A+   E+ W +  L++L + +
Sbjct: 430 SSAEAEYRALATTTCEIQWLLYALQDLDIKH 460


>ref|XP_003602418.1| Stomatin-like protein [Medicago truncatula]
           gi|355491466|gb|AES72669.1| Stomatin-like protein
           [Medicago truncatula]
          Length = 605

 Score = 92.4 bits (228), Expect(2) = 3e-21
 Identities = 44/87 (50%), Positives = 59/87 (67%)
 Frame = -1

Query: 358 SVQLLSQYRHMPRTSHLQALVHTLRYVHHTEGQGILLQGSDNLTLQAFSDSDWAACPDSR 179
           SV +LSQ+   PR  H  A +  +RY+    GQGI L  + ++ L  + D+DWAACP +R
Sbjct: 404 SVHILSQFMQQPREDHWTAALRVVRYLKGNPGQGIFLDSTSDMKLHGWCDADWAACPITR 463

Query: 178 RSVTGYVLLLGNSPIVWKSKKQATVSR 98
           RS+TG+V +LGNSPI WK+KKQ  VSR
Sbjct: 464 RSLTGWV-ILGNSPISWKTKKQQVVSR 489



 Score = 34.3 bits (77), Expect(2) = 3e-21
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 98  SSAESEYQAMASAASEVTWAVRLLEELGVSN 6
           SSAESEY++MA+   E+ W   +L  LG+S+
Sbjct: 490 SSAESEYRSMANTTCELKWVKSILCSLGISH 520