BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047872
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002873920.1| pentatricopeptide repeat-containing protein ...    95   5e-18
emb|CBI26162.3| unnamed protein product [Vitis vinifera]               95   7e-18
ref|NP_197396.1| pentatricopeptide repeat-containing protein [Ar...    92   3e-17
gb|ABD96889.1| hypothetical protein [Cleome spinosa]                   85   7e-15
ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11

>ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319757|gb|EFH50179.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 483

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = -1

Query: 396 MARNPSSFTFFFLRQPHKNPNFHFRKFTISTKDHFNSRTDKQESL---TQVVKDVSKYLR 226
           M+R  S    FF  +  +NPN   R  T+ ++D   S+ D+Q+S    T++ K VS  +R
Sbjct: 1   MSRGQSYLINFFRNRTRQNPNAQIRSLTVESRDS-ESKPDEQKSAVSYTEMAKTVSTIMR 59

Query: 225 SRPRWENTLVSDFSGIDFSDTSLLYELVKKESNLMLKIRFFYWVCGKFGLISDDRLFGLL 46
            R RW+ TLVSDF   DF+D     +L+K ++N+M  + FF W+C  +    D     LL
Sbjct: 60  QRQRWQQTLVSDFPSFDFADPLFFRQLLKSQNNVMFSLWFFRWLCSNYDYTPDSVSLNLL 119

Query: 45  FDCLVESKAANAA 7
           F  L++ KA  AA
Sbjct: 120 FGALLDGKAVKAA 132


>emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 11/154 (7%)
 Frame = -1

Query: 435 YIYGSSYLHKL----TLMAR-NPSSFTFFFLRQPHKNPNFHFRKFTISTKDHF------N 289
           YI+ ++Y   L    T MAR + SS    FLRQ   NPN   R   + + + +      +
Sbjct: 29  YIFTATYYSFLVKTQTSMARPSSSSSVISFLRQ---NPNSRIRNLGVVSGNQYGDVEGAH 85

Query: 288 SRTDKQESLTQVVKDVSKYLRSRPRWENTLVSDFSGIDFSDTSLLYELVKKESNLMLKIR 109
             T +Q+ L ++VK VS   R+RPRWE TL+SDF   +F D + L   V+ + N ++ +R
Sbjct: 86  QHTQQQQHLEEIVKRVSDITRTRPRWEQTLLSDFPSFNFLDPTFLSHFVEHQKNALISLR 145

Query: 108 FFYWVCGKFGLISDDRLFGLLFDCLVESKAANAA 7
           FF+W+  + G   D     +LFD LVE+ A NAA
Sbjct: 146 FFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAA 179


>ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g18950 gi|332005249|gb|AED92632.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 483

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
 Frame = -1

Query: 396 MARNPSSFTFFFLRQPHKNPNFHFRKFTISTKDHFNSRTDKQESL---TQVVKDVSKYLR 226
           M+R  S    FF  +  KNPN   R  T+ ++D   S+ D+Q+S    T++ K VS  +R
Sbjct: 1   MSRGQSYLISFFRNRTRKNPNTQIRSLTVESRD-CESKPDEQKSAVSYTEMAKTVSTIMR 59

Query: 225 SRPRWENTLVSDFSGIDFSDTSLLYELVKKESNLMLKIRFFYWVCGKFGLISDDRLFGLL 46
            R RW+ TLVSDF   DF+D     EL+K ++N++  + FF W+C  +          +L
Sbjct: 60  ERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYTPGPVSLNIL 119

Query: 45  FDCLVESKAANAA 7
           F  L++ KA  AA
Sbjct: 120 FGALLDGKAVKAA 132


>gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
 Frame = -1

Query: 396 MARNPSSFTFFFLRQPHKNPNFHFRKFTISTKDHFN-------------SRTDKQESLTQ 256
           M R  S    FF  +  +NPN   R  ++  KD  +             S+   + + T+
Sbjct: 1   MIRASSYVNSFFRHRARRNPNAQLRNLSVDGKDGVSEAEGSGSIGGERVSQDISRRNYTE 60

Query: 255 VVKDVSKYLRSRPRWENTLVSDFSGIDFSDTSLLYELVKKESNLMLKIRFFYWVCGKFGL 76
           + K V+   R +PRWE TLVSDF   +F+D     ELV  ++N++L +RFF W+C     
Sbjct: 61  MAKIVATITREKPRWEQTLVSDFPSFNFADPLFFRELVATQNNVLLSLRFFQWLCTNHDC 120

Query: 75  ISDDRLFGLLFDCLVESKAANAA 7
             D     +LF+ L+++KA  AA
Sbjct: 121 TPDPISSNMLFEALLDAKAVRAA 143


>ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
 Frame = -1

Query: 345 KNPNFHFRKFTISTKDHFNSRTDKQES-----------LTQVVKDVSKYLRSRPRWENTL 199
           KN   H R  ++ T    N R + + S           ++++  +V K +RS+PRWE +L
Sbjct: 55  KNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEIAAEVGKVIRSKPRWEQSL 114

Query: 198 VSDFSGIDFSDTSLLYELVKKESNLMLKIRFFYWVCGKFGLISDDRLFGLLFDCLVESKA 19
           +SD+   +F D S   EL+K+ +N+ L +RFF W+  +   +        LFD L+E+KA
Sbjct: 115 LSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFLPHPVSCNKLFDALLEAKA 174