BLASTX nr result

ID: Cnidium21_contig00047644 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047644
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containi...   182   2e-44
ref|XP_002326752.1| predicted protein [Populus trichocarpa] gi|2...   177   6e-43
emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]   177   8e-43
ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containi...   172   2e-41
ref|XP_002518995.1| GTP-binding  protein alpha subunit, gna, put...   172   2e-41

>ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
           gi|449508034|ref|XP_004163198.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  182 bits (462), Expect = 2e-44
 Identities = 83/140 (59%), Positives = 107/140 (76%)
 Frame = +2

Query: 5   CSSNLLLTCIQLSWGSMDYACSIFNQIDDPGSFEFNIMIRGYVKDMNFDEALFMYHQMLD 184
           CSS++L TC    W SMDYACSIF Q+D+P +F+FN MIRGYV +MNF+ A+++Y+ ML 
Sbjct: 66  CSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQ 125

Query: 185 MDVVPDNFTYPFLLKACAQLRDVKKGVQIHGQVFKLGFEDNVFVQNSLINFYGKXXXXXX 364
            +V PDNFTYP +LKACA+L  +++G+QIHG VFKLG ED+V+VQNSLIN YGK      
Sbjct: 126 REVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEM 185

Query: 365 XXXXXXKMEQRSVASWSALI 424
                 +MEQ+SVASWSA+I
Sbjct: 186 SCAIFRRMEQKSVASWSAII 205


>ref|XP_002326752.1| predicted protein [Populus trichocarpa] gi|222834074|gb|EEE72551.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score =  177 bits (450), Expect = 6e-43
 Identities = 83/140 (59%), Positives = 101/140 (72%)
 Frame = +2

Query: 5   CSSNLLLTCIQLSWGSMDYACSIFNQIDDPGSFEFNIMIRGYVKDMNFDEALFMYHQMLD 184
           C+SNL+ TC    WGSMDYACSIF QID PG+FEFN MIRGYV  MN + ALF+Y++ML+
Sbjct: 19  CASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLE 78

Query: 185 MDVVPDNFTYPFLLKACAQLRDVKKGVQIHGQVFKLGFEDNVFVQNSLINFYGKXXXXXX 364
             V  DNFTYP L KACA LR +++G+QIHG +FK G E ++FVQNSLIN YGK      
Sbjct: 79  RGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIEL 138

Query: 365 XXXXXXKMEQRSVASWSALI 424
                  M++R VASWSA+I
Sbjct: 139 SCSVFEHMDRRDVASWSAII 158


>emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  177 bits (449), Expect = 8e-43
 Identities = 83/140 (59%), Positives = 104/140 (74%)
 Frame = +2

Query: 5   CSSNLLLTCIQLSWGSMDYACSIFNQIDDPGSFEFNIMIRGYVKDMNFDEALFMYHQMLD 184
           C+SNL+ TC    WGSMDYACSIF Q+D+PGSF+FN M+RG+VKDMN +EAL  Y +M +
Sbjct: 22  CASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAE 81

Query: 185 MDVVPDNFTYPFLLKACAQLRDVKKGVQIHGQVFKLGFEDNVFVQNSLINFYGKXXXXXX 364
             V PDNFTYP LLKACA+L  V++G+Q+H  + KLG E++VFVQNSLI+ YGK      
Sbjct: 82  RGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 141

Query: 365 XXXXXXKMEQRSVASWSALI 424
                 +M +RSVASWSALI
Sbjct: 142 CCAVFEQMNERSVASWSALI 161


>ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera] gi|297742017|emb|CBI33804.3| unnamed
           protein product [Vitis vinifera]
          Length = 605

 Score =  172 bits (437), Expect = 2e-41
 Identities = 82/140 (58%), Positives = 103/140 (73%)
 Frame = +2

Query: 5   CSSNLLLTCIQLSWGSMDYACSIFNQIDDPGSFEFNIMIRGYVKDMNFDEALFMYHQMLD 184
           C+SNL+ TC    WGSMDYACSIF Q+D+ GSF+FN M+RG+VKDMN +EAL  Y +M +
Sbjct: 65  CASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAE 124

Query: 185 MDVVPDNFTYPFLLKACAQLRDVKKGVQIHGQVFKLGFEDNVFVQNSLINFYGKXXXXXX 364
             V PDNFTYP LLKACA+L  V++G+Q+H  + KLG E++VFVQNSLI+ YGK      
Sbjct: 125 RGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 184

Query: 365 XXXXXXKMEQRSVASWSALI 424
                 +M +RSVASWSALI
Sbjct: 185 CCAVFEQMNERSVASWSALI 204


>ref|XP_002518995.1| GTP-binding  protein alpha subunit, gna, putative [Ricinus communis]
            gi|223541982|gb|EEF43528.1| GTP-binding protein alpha
            subunit, gna, putative [Ricinus communis]
          Length = 1203

 Score =  172 bits (437), Expect = 2e-41
 Identities = 77/140 (55%), Positives = 102/140 (72%)
 Frame = +2

Query: 5    CSSNLLLTCIQLSWGSMDYACSIFNQIDDPGSFEFNIMIRGYVKDMNFDEALFMYHQMLD 184
            C+SNL+ TC    WGSMDYACSIF QID PGSFE+N MI+GYV D   + AL +Y++ML+
Sbjct: 926  CASNLVATCALSHWGSMDYACSIFRQIDQPGSFEYNTMIKGYVSDFKMENALLLYYEMLE 985

Query: 185  MDVVPDNFTYPFLLKACAQLRDVKKGVQIHGQVFKLGFEDNVFVQNSLINFYGKXXXXXX 364
             +V  DNFTYP L+KACA LR + + +QIHG +FKLGFE++++VQNSLIN YGK      
Sbjct: 986  KEVQSDNFTYPALIKACAWLRAIDESMQIHGHIFKLGFEEDLYVQNSLINMYGKCGKIEL 1045

Query: 365  XXXXXXKMEQRSVASWSALI 424
                  ++E + +ASWS++I
Sbjct: 1046 SCDVFKQIEHKDIASWSSII 1065


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