BLASTX nr result

ID: Cnidium21_contig00047623 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047623
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]   140   1e-31
ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein lig...   139   2e-31
emb|CBI19874.3| unnamed protein product [Vitis vinifera]              139   2e-31
sp|C6L7U1.2|LIN1_LOTJA RecName: Full=Putative E3 ubiquitin-prote...   132   3e-29
dbj|BAH86605.1| U-box protein with unknown function [Lotus japon...   132   3e-29

>emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]
          Length = 1494

 Score =  140 bits (352), Expect = 1e-31
 Identities = 65/96 (67%), Positives = 78/96 (81%)
 Frame = +3

Query: 3    GFDKPYNALMKAEKLKYYDAXXXXXXXXXXKAAISWERRVAFVLCNHEKGMIFKALEECL 182
            G+D+PY+ALMK+E+LK Y+           KA  SW++RV FVLCNHEKG IFKALEECL
Sbjct: 1025 GYDQPYHALMKSERLKIYENELTETTXEEEKAVTSWQKRVVFVLCNHEKGSIFKALEECL 1084

Query: 183  KSNSIEIAKSCLVIATWIVYMLYSLPDTGVRDAARK 290
            KSNS+EIAKSCLV+ATW+ YMLY+LPDTGVR+ A K
Sbjct: 1085 KSNSLEIAKSCLVVATWLTYMLYNLPDTGVRNVAHK 1120


>ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis
            vinifera]
          Length = 1494

 Score =  139 bits (350), Expect = 2e-31
 Identities = 64/96 (66%), Positives = 76/96 (79%)
 Frame = +3

Query: 3    GFDKPYNALMKAEKLKYYDAXXXXXXXXXXKAAISWERRVAFVLCNHEKGMIFKALEECL 182
            G+D+PY+ALMK+E+LK Y+           KA  SW++RV FVLCNHEKG IFKALEECL
Sbjct: 1025 GYDQPYHALMKSERLKIYENELTETTEEEEKAVTSWQKRVVFVLCNHEKGSIFKALEECL 1084

Query: 183  KSNSIEIAKSCLVIATWIVYMLYSLPDTGVRDAARK 290
            KSNS+EIAKSCLV+ATW+ YMLY LPDTGVR+ A K
Sbjct: 1085 KSNSLEIAKSCLVVATWLTYMLYHLPDTGVRNVAHK 1120


>emb|CBI19874.3| unnamed protein product [Vitis vinifera]
          Length = 1510

 Score =  139 bits (350), Expect = 2e-31
 Identities = 64/96 (66%), Positives = 76/96 (79%)
 Frame = +3

Query: 3    GFDKPYNALMKAEKLKYYDAXXXXXXXXXXKAAISWERRVAFVLCNHEKGMIFKALEECL 182
            G+D+PY+ALMK+E+LK Y+           KA  SW++RV FVLCNHEKG IFKALEECL
Sbjct: 1041 GYDQPYHALMKSERLKIYENELTETTEEEEKAVTSWQKRVVFVLCNHEKGSIFKALEECL 1100

Query: 183  KSNSIEIAKSCLVIATWIVYMLYSLPDTGVRDAARK 290
            KSNS+EIAKSCLV+ATW+ YMLY LPDTGVR+ A K
Sbjct: 1101 KSNSLEIAKSCLVVATWLTYMLYHLPDTGVRNVAHK 1136


>sp|C6L7U1.2|LIN1_LOTJA RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName:
            Full=Protein cerberus
          Length = 1485

 Score =  132 bits (332), Expect = 3e-29
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +3

Query: 3    GFDKPYNALMKAEKLKYYDAXXXXXXXXXXKAAISWERRVAFVLCNHEKGMIFKALEECL 182
            GFD+PYNALMK E+L  +D            A  SW++R+A VLCNHE G IFKALEECL
Sbjct: 1019 GFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECL 1078

Query: 183  KSNSIEIAKSCLVIATWIVYMLYSLPDTGVRDAARKCL 296
            KSNS+++AKSCLV+ATW+ +MLY+LPDTGVRD ARK L
Sbjct: 1079 KSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSL 1116


>dbj|BAH86605.1| U-box protein with unknown function [Lotus japonicus]
            gi|254749430|dbj|BAH86606.1| U-box protein with unknown
            function [Lotus japonicus]
          Length = 1477

 Score =  132 bits (332), Expect = 3e-29
 Identities = 62/98 (63%), Positives = 75/98 (76%)
 Frame = +3

Query: 3    GFDKPYNALMKAEKLKYYDAXXXXXXXXXXKAAISWERRVAFVLCNHEKGMIFKALEECL 182
            GFD+PYNALMK E+L  +D            A  SW++R+A VLCNHE G IFKALEECL
Sbjct: 1011 GFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECL 1070

Query: 183  KSNSIEIAKSCLVIATWIVYMLYSLPDTGVRDAARKCL 296
            KSNS+++AKSCLV+ATW+ +MLY+LPDTGVRD ARK L
Sbjct: 1071 KSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSL 1108


Top