BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047529
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group] g...   142   4e-32
gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indi...   142   4e-32
gb|ABA91088.1| retrotransposon protein, putative, Ty1-copia subc...   133   2e-29
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]...   131   5e-29
gb|ABA95567.1| retrotransposon protein, putative, Ty1-copia subc...   131   6e-29

>ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group]
           gi|113622864|dbj|BAF22809.1| Os08g0125300 [Oryza sativa
           Japonica Group] gi|215701150|dbj|BAG92574.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 1427

 Score =  142 bits (357), Expect = 4e-32
 Identities = 60/112 (53%), Positives = 85/112 (75%)
 Frame = -2

Query: 339 HVNFQAMQYMCSNGMAHGLPNLVHPKEVCKGCLLSKQTRRPFPSKSNFVARELLQLIHGD 160
           HVNFQAM+ +   GMA G+P + HP ++C+ CL++KQ R+PFP+ +NF A E L+L+H D
Sbjct: 501 HVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLELLHID 560

Query: 159 LCGPITPQTPAGSRFFLLLVDDLSRMMWVFTLKSKDEAFTTFKRFKAMVEKS 4
           LCGPITP T AG+R+F+L+VDD SR MW+F +K+KD+A   F +FK + E +
Sbjct: 561 LCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENT 612


>gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indica Group]
          Length = 1427

 Score =  142 bits (357), Expect = 4e-32
 Identities = 60/112 (53%), Positives = 85/112 (75%)
 Frame = -2

Query: 339 HVNFQAMQYMCSNGMAHGLPNLVHPKEVCKGCLLSKQTRRPFPSKSNFVARELLQLIHGD 160
           HVNFQAM+ +   GMA G+P + HP ++C+ CL++KQ R+PFP+ +NF A E L+L+H D
Sbjct: 501 HVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLELLHID 560

Query: 159 LCGPITPQTPAGSRFFLLLVDDLSRMMWVFTLKSKDEAFTTFKRFKAMVEKS 4
           LCGPITP T AG+R+F+L+VDD SR MW+F +K+KD+A   F +FK + E +
Sbjct: 561 LCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENT 612


>gb|ABA91088.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1399

 Score =  133 bits (334), Expect = 2e-29
 Identities = 61/110 (55%), Positives = 78/110 (70%)
 Frame = -2

Query: 339 HVNFQAMQYMCSNGMAHGLPNLVHPKEVCKGCLLSKQTRRPFPSKSNFVARELLQLIHGD 160
           H+NFQA++ M    M  GLP + H  E+C GCL  KQ R PFP++S F A+ +L+L+HGD
Sbjct: 555 HLNFQALRRMAHGDMVRGLPRIDHADELCDGCLAGKQRRAPFPAESKFRAQTVLELVHGD 614

Query: 159 LCGPITPQTPAGSRFFLLLVDDLSRMMWVFTLKSKDEAFTTFKRFKAMVE 10
           LCGPI P TP G ++FLLLVDD+SR MW+  L SK EA T  K+F+A VE
Sbjct: 615 LCGPILPATPGGRKYFLLLVDDMSRHMWIRLLTSKHEAATAIKQFQAGVE 664


>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108710383|gb|ABF98178.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1339

 Score =  131 bits (330), Expect = 5e-29
 Identities = 55/112 (49%), Positives = 81/112 (72%)
 Frame = -2

Query: 339 HVNFQAMQYMCSNGMAHGLPNLVHPKEVCKGCLLSKQTRRPFPSKSNFVARELLQLIHGD 160
           HVNF A++ +    MA G+P + HP ++C+ CL++KQ R+PFP  +N++A   L+L+H D
Sbjct: 454 HVNFHALKLLVDKEMAAGVPAVHHPNQLCQACLVAKQVRQPFPGMANYLAEAPLELLHMD 513

Query: 159 LCGPITPQTPAGSRFFLLLVDDLSRMMWVFTLKSKDEAFTTFKRFKAMVEKS 4
           LCGPITP T  G+R+F+L+VDD S  MWVF +KSKD+A   F++FK + E +
Sbjct: 514 LCGPITPSTFTGNRYFMLIVDDFSHWMWVFVIKSKDQALAAFEKFKPLAENT 565


>gb|ABA95567.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1465

 Score =  131 bits (329), Expect = 6e-29
 Identities = 60/110 (54%), Positives = 77/110 (70%)
 Frame = -2

Query: 339 HVNFQAMQYMCSNGMAHGLPNLVHPKEVCKGCLLSKQTRRPFPSKSNFVARELLQLIHGD 160
           H+NFQA++ M    M  GLP + H  E+C GCL  KQ   PFP++S F A+ +L+L+HGD
Sbjct: 621 HLNFQALRRMAHGDMVRGLPRIDHADELCDGCLAGKQRHAPFPAESKFRAQTVLELVHGD 680

Query: 159 LCGPITPQTPAGSRFFLLLVDDLSRMMWVFTLKSKDEAFTTFKRFKAMVE 10
           LCGPI P TP G ++FLLLVDD+SR MW+  L SK EA T  K+F+A VE
Sbjct: 681 LCGPILPATPGGRKYFLLLVDDMSRHMWIRLLTSKHEAATAIKQFQAGVE 730