BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047520
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG44843.1|AF281155_1 cohesion family protein SYN3 [Arabidops...    63   2e-08
ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidop...    63   2e-08
ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus com...    61   1e-07
ref|XP_002876510.1| hypothetical protein ARALYDRAFT_486422 [Arab...    60   1e-07
ref|XP_002872750.1| hypothetical protein ARALYDRAFT_911799 [Arab...    60   2e-07

>gb|AAG44843.1|AF281155_1 cohesion family protein SYN3 [Arabidopsis thaliana]
          Length = 692

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 11/76 (14%)
 Frame = +3

Query: 117 YDKVTVLSNRVMKQRLDDCSDILRTRNKCYRLKI-----------DRMFSDPILTGFCND 263
           +D VTVL+N+ + +RL D SD LR R K    K+           D+ F++P+ TGF +D
Sbjct: 359 FDGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPLFTGFSDD 418

Query: 264 LRDAFNKDFVSSKPYL 311
           LR+ F KD+V+SKP+L
Sbjct: 419 LRNVFEKDYVASKPHL 434


>ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidopsis thaliana]
           gi|30913284|sp|Q9FQ19.2|SCC13_ARATH RecName: Full=Sister
           chromatid cohesion 1 protein 3; AltName: Full=SCC1
           homolog 3; Short=AtRAD21-2
           gi|18157647|gb|AAL62059.1|AF400128_1 RAD21-2
           [Arabidopsis thaliana] gi|6996291|emb|CAB75452.1|
           putative protein [Arabidopsis thaliana]
           gi|332646418|gb|AEE79939.1| Sister chromatid cohesion 1
           protein 3 [Arabidopsis thaliana]
          Length = 693

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 11/76 (14%)
 Frame = +3

Query: 117 YDKVTVLSNRVMKQRLDDCSDILRTRNKCYRLKI-----------DRMFSDPILTGFCND 263
           +D VTVL+N+ + +RL D SD LR R K    K+           D+ F++P+ TGF +D
Sbjct: 360 FDGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPLFTGFSDD 419

Query: 264 LRDAFNKDFVSSKPYL 311
           LR+ F KD+V+SKP+L
Sbjct: 420 LRNVFEKDYVASKPHL 435


>ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus communis]
           gi|223547692|gb|EEF49185.1| cohesin subunit rad21,
           putative [Ricinus communis]
          Length = 774

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
 Frame = +3

Query: 6   FGSHNVIVGEHITPELALRSTXXXXXXXXXXXXXXXXYDKVTVLSNRVMKQRLDDCSDIL 185
           F SH  I    ++PELA+RST                +D+ TVL+N+ MK+ L++  DIL
Sbjct: 353 FDSH--ISFGRVSPELAIRSTPAVQQPRPRTRKRKHFFDEATVLTNKFMKKALENSKDIL 410

Query: 186 RTRNKC-----------YRLKIDRMFSDPILTGFCNDLRDAFNKDFVSSKPYL 311
           R R +              L+ +++ S+P+LTG C DL +   KD++S KP+L
Sbjct: 411 RKRREIPSTALGIWKLRNSLRKEQVLSEPLLTGSCADLCNLL-KDYISGKPHL 462


>ref|XP_002876510.1| hypothetical protein ARALYDRAFT_486422 [Arabidopsis lyrata subsp.
           lyrata] gi|297322348|gb|EFH52769.1| hypothetical protein
           ARALYDRAFT_486422 [Arabidopsis lyrata subsp. lyrata]
          Length = 696

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 11/76 (14%)
 Frame = +3

Query: 117 YDKVTVLSNRVMKQRLDDCSDILRTRNKCYRLKI-----------DRMFSDPILTGFCND 263
           +D+V VL+NR +++RL+D SD LR R K    K+           D+ F +P+ TGF + 
Sbjct: 359 FDEVHVLTNRYIRERLEDPSDTLRKRKKMPSSKVNVWRMNNQSRKDQKFDEPLFTGFSDV 418

Query: 264 LRDAFNKDFVSSKPYL 311
           L   F KD+V+SKPYL
Sbjct: 419 LGRVFEKDYVASKPYL 434


>ref|XP_002872750.1| hypothetical protein ARALYDRAFT_911799 [Arabidopsis lyrata subsp.
           lyrata] gi|297318587|gb|EFH49009.1| hypothetical protein
           ARALYDRAFT_911799 [Arabidopsis lyrata subsp. lyrata]
          Length = 653

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 12/77 (15%)
 Frame = +3

Query: 117 YDKVTVL-SNRVMKQRLDDCSDILRTRNKC-------YRL----KIDRMFSDPILTGFCN 260
           YDK  VL S++++++RL+D S  +R R K        +RL    K D++F++P+ TGF N
Sbjct: 271 YDKTYVLLSHKILRKRLEDPSKTVRKRKKLPSSKLGFWRLDNQSKKDQLFNEPLFTGFSN 330

Query: 261 DLRDAFNKDFVSSKPYL 311
            LR  F KD+V+SKPYL
Sbjct: 331 VLRSVFEKDYVASKPYL 347