BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047499
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...    62   5e-08
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...    59   5e-07
ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi...    55   6e-06
ref|XP_003601624.1| Pentatricopeptide repeat-containing protein ...    55   8e-06

>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
           gi|10176990|dbj|BAB10222.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 678

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
 Frame = +2

Query: 2   PISALHFH-SIPCSSSPFL-PTNTTASISNTSLSATYSSKHVWRKPTTSLPQSSHQPYRK 175
           P++  H + SIP S+ P     N   ++S +S S +  +K VWRK       SS Q  RK
Sbjct: 17  PLTRPHIYTSIPFSTIPEARQRNLIFTVSASSSSESTQNKKVWRKQPEKNTTSSFQALRK 76

Query: 176 RPHL---GLLDHSIDMDELVTLIKQTTDEHQLFALMSQYKTR 292
                    LDH++DMDEL+  I QT +E +LF+L+S YK R
Sbjct: 77  HRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDR 118


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 74  SISNTSLSATYSSKHVWRKPTTSLPQSSHQPYRKRPHL---GLLDHSIDMDELVTLIKQT 244
           S S++S S +  +K VWRK       SS Q  RK         LDH++DMDEL+  I QT
Sbjct: 45  SASSSSSSPSTQTKKVWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQT 104

Query: 245 TDEHQLFALMSQYKTR 292
            +E +LF+L+S YK R
Sbjct: 105 QNEKELFSLLSTYKDR 120


>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
 Frame = +2

Query: 29  IPCSSSPFLPTNTTASISNTSLSATYSSKH------------VWRK---PTTSLPQSSHQ 163
           +P SSS F   + +   +N       + KH            VWR+    TTSL  SS Q
Sbjct: 16  LPSSSSSFFSPHISYIKTNIFSPFNKTQKHRACFILVSVFKDVWRRLPDETTSLLSSSRQ 75

Query: 164 PYRKRPHLGLLDHSIDMDELVTLIKQTTDEHQLFALMSQYKTR 292
              ++  +  LDHS+DMDEL+  I QT++E +L++LMS YK R
Sbjct: 76  HRPRKQRVVHLDHSVDMDELLASISQTSNEQELYSLMSPYKGR 118


>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
           gi|449530101|ref|XP_004172035.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
 Frame = +2

Query: 95  SATYSSKHVWRKPTTS-------LPQSSHQPYRKRPHLGLLDHSIDMDELVTLIKQTTDE 253
           S++ +SK +WR+ T S       LPQ   +  R+      LDHSIDMDEL+  I QT +E
Sbjct: 50  SSSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRESSHLDHSIDMDELLASIGQTKNE 109

Query: 254 HQLFALMSQYKTR 292
            +L++++S YK R
Sbjct: 110 QELYSVLSPYKGR 122


>ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355490672|gb|AES71875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 684

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
 Frame = +2

Query: 26  SIPCSSSPFL------PTNTTASISNTSLSATYSSKHVW--RKPTTSLPQSSHQPYRKRP 181
           S PCSSS         P  T  +IS TS SAT  SKHVW  R P      ++ Q  +++ 
Sbjct: 19  SFPCSSSKTTIFNKTTPPTTNTTISTTSTSAT--SKHVWTRRIPHPPFSNTNKQQQQQQR 76

Query: 182 HLGL----------LDHSIDMDELVTLIKQTTDEHQLFALMSQYKTR 292
           H             +D S+DM+EL+T I QT +  QL++++S Y  R
Sbjct: 77  HTRTQQQQKQQSPYMDRSVDMNELLTSIAQTQNIEQLYSILSPYNGR 123