BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047479
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80767.1| hypothetical protein VITISV_013864 [Vitis vinifera]    88   6e-16
ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242...    88   8e-16
ref|XP_002519367.1| replication factor C / DNA polymerase III ga...    84   2e-14
ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thali...    82   6e-14
ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arab...    80   2e-13

>emb|CAN80767.1| hypothetical protein VITISV_013864 [Vitis vinifera]
          Length = 545

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
 Frame = -2

Query: 339 ILQNFSPNGYAL-RKSTTPRPLFKASQRDSTSQEEQLLSLD-----SKATHSQYIDGSPP 178
           I+    PN + + RKS +P  + K+++++ST Q + L  +D     +K  HSQ+ +    
Sbjct: 69  IIHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAKPVHSQFRNSGAS 128

Query: 177 NVSHNDSAVETTNSSSANSGILNDIWMQCIEKCHPNTLRQLLHTYGKLVSISEVEGDLV 1
             SH+D  +      S N+  L+DIW +CIE+CH  TLRQLLH +GKLVSISE EG LV
Sbjct: 129 ASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLV 187


>ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera]
          Length = 1274

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 6/119 (5%)
 Frame = -2

Query: 339  ILQNFSPNGYAL-RKSTTPRPLFKASQRDSTSQEEQLLSLD-----SKATHSQYIDGSPP 178
            I+    PN + + RKS +P  + K+++++ST Q + L  +D     +K  HSQ+ +    
Sbjct: 829  IVHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAKPVHSQFRNSGAS 888

Query: 177  NVSHNDSAVETTNSSSANSGILNDIWMQCIEKCHPNTLRQLLHTYGKLVSISEVEGDLV 1
              SH+D  +      S N+  L+DIW +CIE+CH  TLRQLLH +GKLVSISE EG LV
Sbjct: 889  ASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLV 947


>ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223541434|gb|EEF42984.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 1270

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = -2

Query: 357  STTREV-ILQNFSPNGYALRKSTTPRPLFKASQRDSTSQEEQLLSLDSKATHSQYIDGSP 181
            S +REV + +  S   Y  R+S++P  L+KA    S+ + E     +SK   S  ID   
Sbjct: 831  SASREVTVYKQKSDAQYLSRRSSSPASLYKAINGKSSHRGE--FGFNSKLRPSHSIDSCM 888

Query: 180  PNVSHNDSAVETTNSSSANSGILNDIWMQCIEKCHPNTLRQLLHTYGKLVSISEVEGDLV 1
             + S +D  VE+      N+  L+ IW +CI  CH NTLRQLLHT+GKL S+SEVEG LV
Sbjct: 889  SSASRDDELVESMPLRYRNAEKLDRIWEKCIANCHSNTLRQLLHTHGKLFSLSEVEGALV 948


>ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
            gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis
            thaliana] gi|20197093|gb|AAC18938.2| similar to
            prokaryotic DNA polymerase III gamma subunit [Arabidopsis
            thaliana] gi|330250491|gb|AEC05585.1| AAA-type
            ATPase-like protein [Arabidopsis thaliana]
          Length = 1218

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
 Frame = -2

Query: 357  STTREVILQNFSPNGYALRKSTTPRPLFKASQRDSTSQEEQLLSLDSK----ATHSQYID 190
            S +REV+       G    KS +P  + K +   S   +     +D+     ++ SQ I+
Sbjct: 827  SVSREVMAYKQRIGGLHFSKSASPASVIKRNGNHSHEAKPFSRVIDNNCYKSSSSSQMIE 886

Query: 189  GSPPNVSHNDSAVETTNSSSANSGILNDIWMQCIEKCHPNTLRQLLHTYGKLVSISEVEG 10
                  SH +S   T   +  +S  LNDIW +CIE+CH  TLRQLL+T+GKL+SISEVEG
Sbjct: 887  SEGSIASHENSIASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEG 946

Query: 9    DLV 1
             LV
Sbjct: 947  ILV 949


>ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
            lyrata] gi|297320968|gb|EFH51389.1| hypothetical protein
            ARALYDRAFT_484163 [Arabidopsis lyrata subsp. lyrata]
          Length = 1222

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
 Frame = -2

Query: 357  STTREVILQNFSPNGYALRKSTTPRPLFKASQRDSTSQEEQLLSLDSK----ATHSQYID 190
            S +REV+       G    K  +P  + K +   S   +     +D+     ++ SQ I+
Sbjct: 831  SISREVMAYKQRIGGLHFSKLASPASVIKRNGNHSHEAKALSRVIDNNCYKSSSSSQVIE 890

Query: 189  GSPPNVSHNDSAVETTNSSSANSGILNDIWMQCIEKCHPNTLRQLLHTYGKLVSISEVEG 10
                  SH +S   T   +  +S  LNDIW +CIE+CH  TLRQLL+T+GKL+SISEVEG
Sbjct: 891  SEASIASHENSVASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEG 950

Query: 9    DLV 1
             LV
Sbjct: 951  ILV 953