BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00047435
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   184   8e-45
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   181   5e-44
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   180   9e-44
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              174   9e-42
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   174   9e-42

>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score =  184 bits (466), Expect = 8e-45
 Identities = 91/134 (67%), Positives = 110/134 (82%)
 Frame = +2

Query: 5   LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184
           L+M G+E R V+VVQAAVQIG A+E EVRIH+F++KTKK +      Q QED S+ET  L
Sbjct: 236 LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMIL 295

Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364
           RKRVKSL+K+ R  EVRK++K+E+ + WGRDTQAKLGCRL+ELLTETA+VQPP+ QSAD 
Sbjct: 296 RKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADT 355

Query: 365 PPDIRPAFRHTFRI 406
           PPDIRPAFRH FRI
Sbjct: 356 PPDIRPAFRHVFRI 369


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score =  181 bits (459), Expect = 5e-44
 Identities = 90/135 (66%), Positives = 109/135 (80%)
 Frame = +2

Query: 5   LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184
           LLM G E   V +VQAAVQIG AIEQEVRIH+F++KTK  +  K ++  QE   KE E L
Sbjct: 245 LLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTISGAQESLGKEKEIL 304

Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364
           RKRV SL+++++  EV+K+VKNE+ KPWGRDTQAKLG RLIELLTETA+VQPP++QSAD 
Sbjct: 305 RKRVNSLIRRKKLIEVQKLVKNEEMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADV 364

Query: 365 PPDIRPAFRHTFRIV 409
           PPD+RPAFRH FRIV
Sbjct: 365 PPDVRPAFRHRFRIV 379


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  180 bits (457), Expect = 9e-44
 Identities = 90/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 5   LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184
           L+M G+E R V+VVQAAVQIG A+E EVRIH+F++KTKK +      Q QED SKET  L
Sbjct: 235 LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMIL 294

Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364
           RKRVKSL+K+ R  EVRK++K+E+ + WGRDTQAKLGCRL+ELLTETA+VQ P+ QSAD 
Sbjct: 295 RKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADT 354

Query: 365 PPDIRPAFRHTFRI 406
           PPDIRPAFRH F+I
Sbjct: 355 PPDIRPAFRHVFKI 368


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  174 bits (440), Expect = 9e-42
 Identities = 89/135 (65%), Positives = 107/135 (79%)
 Frame = +2

Query: 5   LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184
           L+M G E   VRVVQAAVQIG AIEQEVRIHSF++KTK  +  K +   QE   +E E L
Sbjct: 67  LVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKEIL 125

Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364
           RKRVKS ++K++  EV+K+VKNE+  PWGRDTQAKLG RLIELLTETA+VQ P++QSAD 
Sbjct: 126 RKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADC 185

Query: 365 PPDIRPAFRHTFRIV 409
           PPD+RPAFRHTF+ V
Sbjct: 186 PPDVRPAFRHTFKTV 200


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score =  174 bits (440), Expect = 9e-42
 Identities = 89/135 (65%), Positives = 107/135 (79%)
 Frame = +2

Query: 5   LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184
           L+M G E   VRVVQAAVQIG AIEQEVRIHSF++KTK  +  K +   QE   +E E L
Sbjct: 238 LVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKEIL 296

Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364
           RKRVKS ++K++  EV+K+VKNE+  PWGRDTQAKLG RLIELLTETA+VQ P++QSAD 
Sbjct: 297 RKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADC 356

Query: 365 PPDIRPAFRHTFRIV 409
           PPD+RPAFRHTF+ V
Sbjct: 357 PPDVRPAFRHTFKTV 371