BLASTX nr result
ID: Cnidium21_contig00047435
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00047435 (409 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras... 184 8e-45 ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ... 181 5e-44 sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras... 180 9e-44 emb|CBI36559.3| unnamed protein product [Vitis vinifera] 174 9e-42 ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 174 9e-42 >sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic; AltName: Full=NictaRpoT3-syl; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3A; Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] Length = 977 Score = 184 bits (466), Expect = 8e-45 Identities = 91/134 (67%), Positives = 110/134 (82%) Frame = +2 Query: 5 LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184 L+M G+E R V+VVQAAVQIG A+E EVRIH+F++KTKK + Q QED S+ET L Sbjct: 236 LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMIL 295 Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364 RKRVKSL+K+ R EVRK++K+E+ + WGRDTQAKLGCRL+ELLTETA+VQPP+ QSAD Sbjct: 296 RKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADT 355 Query: 365 PPDIRPAFRHTFRI 406 PPDIRPAFRH FRI Sbjct: 356 PPDIRPAFRHVFRI 369 >ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative [Ricinus communis] gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative [Ricinus communis] Length = 1000 Score = 181 bits (459), Expect = 5e-44 Identities = 90/135 (66%), Positives = 109/135 (80%) Frame = +2 Query: 5 LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184 LLM G E V +VQAAVQIG AIEQEVRIH+F++KTK + K ++ QE KE E L Sbjct: 245 LLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTISGAQESLGKEKEIL 304 Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364 RKRV SL+++++ EV+K+VKNE+ KPWGRDTQAKLG RLIELLTETA+VQPP++QSAD Sbjct: 305 RKRVNSLIRRKKLIEVQKLVKNEEMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADV 364 Query: 365 PPDIRPAFRHTFRIV 409 PPD+RPAFRH FRIV Sbjct: 365 PPDVRPAFRHRFRIV 379 >sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName: Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3B; Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum] Length = 977 Score = 180 bits (457), Expect = 9e-44 Identities = 90/134 (67%), Positives = 109/134 (81%) Frame = +2 Query: 5 LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184 L+M G+E R V+VVQAAVQIG A+E EVRIH+F++KTKK + Q QED SKET L Sbjct: 235 LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMIL 294 Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364 RKRVKSL+K+ R EVRK++K+E+ + WGRDTQAKLGCRL+ELLTETA+VQ P+ QSAD Sbjct: 295 RKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADT 354 Query: 365 PPDIRPAFRHTFRI 406 PPDIRPAFRH F+I Sbjct: 355 PPDIRPAFRHVFKI 368 >emb|CBI36559.3| unnamed protein product [Vitis vinifera] Length = 808 Score = 174 bits (440), Expect = 9e-42 Identities = 89/135 (65%), Positives = 107/135 (79%) Frame = +2 Query: 5 LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184 L+M G E VRVVQAAVQIG AIEQEVRIHSF++KTK + K + QE +E E L Sbjct: 67 LVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKEIL 125 Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364 RKRVKS ++K++ EV+K+VKNE+ PWGRDTQAKLG RLIELLTETA+VQ P++QSAD Sbjct: 126 RKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADC 185 Query: 365 PPDIRPAFRHTFRIV 409 PPD+RPAFRHTF+ V Sbjct: 186 PPDVRPAFRHTFKTV 200 >ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis vinifera] Length = 979 Score = 174 bits (440), Expect = 9e-42 Identities = 89/135 (65%), Positives = 107/135 (79%) Frame = +2 Query: 5 LLMTGQEGRYVRVVQAAVQIGCAIEQEVRIHSFMDKTKKCKTGKILTQDQEDASKETEAL 184 L+M G E VRVVQAAVQIG AIEQEVRIHSF++KTK + K + QE +E E L Sbjct: 238 LVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKEIL 296 Query: 185 RKRVKSLMKKRRTNEVRKIVKNEDFKPWGRDTQAKLGCRLIELLTETAWVQPPISQSADA 364 RKRVKS ++K++ EV+K+VKNE+ PWGRDTQAKLG RLIELLTETA+VQ P++QSAD Sbjct: 297 RKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADC 356 Query: 365 PPDIRPAFRHTFRIV 409 PPD+RPAFRHTF+ V Sbjct: 357 PPDVRPAFRHTFKTV 371