BLASTX nr result
ID: Cnidium21_contig00046972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00046972
(386 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22025.3| unnamed protein product [Vitis vinifera] 171 4e-41
ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi... 171 4e-41
ref|XP_002514539.1| pentatricopeptide repeat-containing protein,... 154 5e-36
ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containi... 154 9e-36
ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containi... 146 1e-33
>emb|CBI22025.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 171 bits (434), Expect = 4e-41
Identities = 85/128 (66%), Positives = 97/128 (75%)
Frame = -1
Query: 386 LGSVLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGDFGEGERLINGMP 207
LGSVLRGCAG++ L GRQVHGY LAHMYMKCG GEGERLI MP
Sbjct: 187 LGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMP 246
Query: 206 VRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITFVSVLSSCAELATIGQGQQ 27
+++VA NTLIAGR+Q G E LDQYNMMKMAGFRPDKITFVSV+SSC+ELAT+GQGQQ
Sbjct: 247 SQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQ 306
Query: 26 VHADAFKS 3
+HA+ K+
Sbjct: 307 IHAEVIKA 314
Score = 55.1 bits (131), Expect = 6e-06
Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 31/150 (20%)
Frame = -1
Query: 377 VLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGD-------FGEGER-- 225
+L+ C LS+G+Q+H L ++Y KCG FG R
Sbjct: 58 LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKN 117
Query: 224 ------LING----------------MPVRSLVACNTLIAGRSQRGLSEGALDQYNMMKM 111
LING MP R++ N ++AG Q +E L ++ M
Sbjct: 118 IMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE 177
Query: 110 AGFRPDKITFVSVLSSCAELATIGQGQQVH 21
GF PD+ SVL CA L + G+QVH
Sbjct: 178 LGFLPDEFALGSVLRGCAGLRALVAGRQVH 207
>ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 171 bits (434), Expect = 4e-41
Identities = 85/128 (66%), Positives = 97/128 (75%)
Frame = -1
Query: 386 LGSVLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGDFGEGERLINGMP 207
LGSVLRGCAG++ L GRQVHGY LAHMYMKCG GEGERLI MP
Sbjct: 187 LGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMP 246
Query: 206 VRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITFVSVLSSCAELATIGQGQQ 27
+++VA NTLIAGR+Q G E LDQYNMMKMAGFRPDKITFVSV+SSC+ELAT+GQGQQ
Sbjct: 247 SQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQ 306
Query: 26 VHADAFKS 3
+HA+ K+
Sbjct: 307 IHAEVIKA 314
Score = 55.1 bits (131), Expect = 6e-06
Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 31/150 (20%)
Frame = -1
Query: 377 VLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGD-------FGEGER-- 225
+L+ C LS+G+Q+H L ++Y KCG FG R
Sbjct: 58 LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKN 117
Query: 224 ------LING----------------MPVRSLVACNTLIAGRSQRGLSEGALDQYNMMKM 111
LING MP R++ N ++AG Q +E L ++ M
Sbjct: 118 IMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE 177
Query: 110 AGFRPDKITFVSVLSSCAELATIGQGQQVH 21
GF PD+ SVL CA L + G+QVH
Sbjct: 178 LGFLPDEFALGSVLRGCAGLRALVAGRQVH 207
>ref|XP_002514539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546143|gb|EEF47645.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 332
Score = 154 bits (390), Expect = 5e-36
Identities = 77/128 (60%), Positives = 91/128 (71%)
Frame = -1
Query: 386 LGSVLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGDFGEGERLINGMP 207
LGSVLRGCAG+K + GRQVH Y LAHMYMK G EGER+I MP
Sbjct: 92 LGSVLRGCAGLKSMYAGRQVHCYVVKCGFEFNLVVGSSLAHMYMKSGSLSEGERVIKSMP 151
Query: 206 VRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITFVSVLSSCAELATIGQGQQ 27
R++VA NTLIAG+SQ G SE LD YNMM++ GFRPDKITF SV+SSC+EL T+GQGQQ
Sbjct: 152 SRNIVAWNTLIAGKSQNGHSEEVLDLYNMMRIMGFRPDKITFASVISSCSELTTLGQGQQ 211
Query: 26 VHADAFKS 3
+HA+ K+
Sbjct: 212 IHAEVIKA 219
>ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 154 bits (388), Expect = 9e-36
Identities = 75/128 (58%), Positives = 94/128 (73%)
Frame = -1
Query: 386 LGSVLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGDFGEGERLINGMP 207
LGSVLRGCAG++ L G++VH LAHMY+K G +GE+LI MP
Sbjct: 197 LGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMP 256
Query: 206 VRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITFVSVLSSCAELATIGQGQQ 27
+R++VA NTLIAG++Q G E L+QYNMMKMAGFRPDKITFVSVLS+C+ELAT+GQGQQ
Sbjct: 257 IRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQ 316
Query: 26 VHADAFKS 3
+HA+ K+
Sbjct: 317 IHAEVIKA 324
Score = 58.5 bits (140), Expect = 5e-07
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = -1
Query: 260 YMKCGDFGEGERLINGMPVRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITF 81
Y++ GD ++L + M R++ N +IAG +Q ++ AL + M GF PD+ T
Sbjct: 138 YLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTL 197
Query: 80 VSVLSSCAELATIGQGQQVHADAFK 6
SVL CA L ++ GQ+VHA K
Sbjct: 198 GSVLRGCAGLRSLLAGQEVHACLLK 222
>ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 146 bits (369), Expect = 1e-33
Identities = 76/128 (59%), Positives = 92/128 (71%)
Frame = -1
Query: 386 LGSVLRGCAGIKDLSMGRQVHGYXXXXXXXXXXXXXXXLAHMYMKCGDFGEGERLINGMP 207
LGSVLRGCA + L G+QVH Y LAHMYMK G +GER+IN MP
Sbjct: 204 LGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMP 263
Query: 206 VRSLVACNTLIAGRSQRGLSEGALDQYNMMKMAGFRPDKITFVSVLSSCAELATIGQGQQ 27
SLVA NTL++G++Q+G EG LDQY MMKMAGFRPDKITFVSV+SSC+ELA + QG+Q
Sbjct: 264 DCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQ 323
Query: 26 VHADAFKS 3
+HA+A K+
Sbjct: 324 IHAEAVKA 331