BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00046683
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB78071.1| putative protein [Arabidopsis thaliana]               138   4e-31
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...   135   3e-30
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...   133   1e-29
emb|CAB40066.1| putative protein [Arabidopsis thaliana] gi|72677...   133   1e-29
dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hy...   130   1e-28

>emb|CAB78071.1| putative protein [Arabidopsis thaliana]
          Length = 290

 Score =  138 bits (348), Expect = 4e-31
 Identities = 57/147 (38%), Positives = 94/147 (63%)
 Frame = -1

Query: 441 NGEGFNNWKRSMMLTLSAKNKLGFVNGTISAPDVASAEYKAWQRCNDLVISWILFNLDEN 262
           +G  F++W+RS+ + L+ +NKLGF++GTI  P     +  +W RCND+V +W++ ++ + 
Sbjct: 34  SGSEFHSWRRSVRMALNVRNKLGFIDGTIPQPPSTHRDAGSWSRCNDMVATWLMNSVSKK 93

Query: 261 IARSVLFLKTTRAIWRDLEDRFGYASMPQISSLEHKLADLHQGQLSVSEFYTKLKTLWDS 82
           I +S+LF+ T  +IW++L  RF     P++  +E +L  L QG + VS +YT+L TLW+ 
Sbjct: 94  IGQSLLFMSTAESIWKNLLSRFKQDDAPRVFEIEQRLGSLQQGSMDVSTYYTELVTLWEE 153

Query: 81  LDDAYPLPTCTCEKCTCNLTGRIQKMQ 1
             +   LP CTC +C CN +   +KMQ
Sbjct: 154 YKNYIELPLCTCGRCECNASALWEKMQ 180


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
           gi|7268152|emb|CAB78488.1| retrovirus-related like
           polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score =  135 bits (341), Expect = 3e-30
 Identities = 55/143 (38%), Positives = 94/143 (65%)
 Frame = -1

Query: 429 FNNWKRSMMLTLSAKNKLGFVNGTISAPDVASAEYKAWQRCNDLVISWILFNLDENIARS 250
           F++W+RS+++ L+ +NKLGF+NGTI+ P     ++ AW RCND+V +W++ ++D+ I +S
Sbjct: 57  FHSWRRSILMALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQS 116

Query: 249 VLFLKTTRAIWRDLEDRFGYASMPQISSLEHKLADLHQGQLSVSEFYTKLKTLWDSLDDA 70
           +L++ T + IW +L  RF     P+I  +E KL+ + QG + +S +YT L TLW+   + 
Sbjct: 117 LLYIATVQGIWNNLLSRFKQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHRNY 176

Query: 69  YPLPTCTCEKCTCNLTGRIQKMQ 1
             LP CTC +C C+   + + +Q
Sbjct: 177 VELPVCTCGRCECDAAVKWEHLQ 199


>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
           score: 11.19) [Arabidopsis thaliana]
          Length = 1633

 Score =  133 bits (335), Expect = 1e-29
 Identities = 52/143 (36%), Positives = 94/143 (65%)
 Frame = -1

Query: 429 FNNWKRSMMLTLSAKNKLGFVNGTISAPDVASAEYKAWQRCNDLVISWILFNLDENIARS 250
           F++W+RS+ + L+ +NKLGF++GTI  P +   +Y AW RCND V +W++ ++ + I +S
Sbjct: 58  FHSWRRSIWMALNVRNKLGFIDGTIVKPPLDHRDYGAWSRCNDTVSTWLMNSVSKKIGQS 117

Query: 249 VLFLKTTRAIWRDLEDRFGYASMPQISSLEHKLADLHQGQLSVSEFYTKLKTLWDSLDDA 70
           +LF+ T   IW+++  RF     P++  +E +L+ + QG + +S +YT+L+TLW+   + 
Sbjct: 118 LLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDISAYYTELQTLWEEHKNY 177

Query: 69  YPLPTCTCEKCTCNLTGRIQKMQ 1
             LP CTC +C C+   + +++Q
Sbjct: 178 VDLPVCTCGRCECDAAVKWERLQ 200


>emb|CAB40066.1| putative protein [Arabidopsis thaliana] gi|7267796|emb|CAB81199.1|
           putative protein [Arabidopsis thaliana]
          Length = 294

 Score =  133 bits (335), Expect = 1e-29
 Identities = 52/143 (36%), Positives = 94/143 (65%)
 Frame = -1

Query: 429 FNNWKRSMMLTLSAKNKLGFVNGTISAPDVASAEYKAWQRCNDLVISWILFNLDENIARS 250
           F++W+RS+ + L+ +NKLGF++GTI  P +   +Y AW RCND V +W++ ++ + I +S
Sbjct: 58  FHSWRRSIWMALNVRNKLGFIDGTIVKPPLDHRDYGAWSRCNDTVSTWLMNSVSKKIGQS 117

Query: 249 VLFLKTTRAIWRDLEDRFGYASMPQISSLEHKLADLHQGQLSVSEFYTKLKTLWDSLDDA 70
           +LF+ T   IW+++  RF     P++  +E +L+ + QG + +S +YT+L+TLW+   + 
Sbjct: 118 LLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDISAYYTELQTLWEEHKNY 177

Query: 69  YPLPTCTCEKCTCNLTGRIQKMQ 1
             LP CTC +C C+   + +++Q
Sbjct: 178 VDLPVCTCGRCECDAAVKWERLQ 200


>dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
          Length = 463

 Score =  130 bits (327), Expect = 1e-28
 Identities = 56/148 (37%), Positives = 92/148 (62%)
 Frame = -1

Query: 444 FNGEGFNNWKRSMMLTLSAKNKLGFVNGTISAPDVASAEYKAWQRCNDLVISWILFNLDE 265
           F+G  + NWKR ++++LSAKNKLGF+ G    PD     ++ W+RC+D+V++W+L +L +
Sbjct: 54  FDGSSYGNWKRGVLISLSAKNKLGFITGAYKKPDKEDLLFEQWRRCSDMVLAWLLNSLSK 113

Query: 264 NIARSVLFLKTTRAIWRDLEDRFGYASMPQISSLEHKLADLHQGQLSVSEFYTKLKTLWD 85
            IA SVL+ +T + +W++LE R+G     ++  L+ +L ++ QG   V+ ++ KLK +WD
Sbjct: 114 EIAESVLYSQTAQELWQELEQRYGQIDGTKMFQLQRELNNVSQGTNDVAAYFNKLKRIWD 173

Query: 84  SLDDAYPLPTCTCEKCTCNLTGRIQKMQ 1
            +        C+CE C C   G   KMQ
Sbjct: 174 QMKVLNTFMVCSCE-CNCEAKGHNAKMQ 200