BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00046317
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             124   8e-27
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             118   6e-25
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid...   114   6e-24
gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group...   110   2e-22
gb|AAO23092.1| putative polyprotein [Oryza sativa Japonica Group...   109   2e-22

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/98 (59%), Positives = 77/98 (78%)
 Frame = -3

Query: 298 ECEEAFQQIKEHLGKPPLLSKPKEGETLIVYLAVSEYAISAVLVREEEGVQYPVYYVSKR 119
           +CEEAF Q+K +L  PP+LSKP+  E L +Y++VS +A+S VLVRE+ G Q P+YYVSK 
Sbjct: 291 KCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSKS 350

Query: 118 MLDAETRYTSMEKLAYALILASRKLRPYFQAHKIEVRT 5
           M D ETRYT MEKLA A++ ++RKLRPYFQ+H ++V T
Sbjct: 351 MTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLT 388


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  118 bits (295), Expect = 6e-25
 Identities = 53/98 (54%), Positives = 79/98 (80%)
 Frame = -3

Query: 298  ECEEAFQQIKEHLGKPPLLSKPKEGETLIVYLAVSEYAISAVLVREEEGVQYPVYYVSKR 119
            + EEAF+++K++L  PP+L KP+ GETL +Y+AVS++A+S+VLVRE+ G Q P++Y SK 
Sbjct: 1094 DSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKS 1153

Query: 118  MLDAETRYTSMEKLAYALILASRKLRPYFQAHKIEVRT 5
            +++AETRY  +EK A A++ ++RKLRPYFQ+H I V T
Sbjct: 1154 LVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLT 1191


>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1212

 Score =  114 bits (286), Expect = 6e-24
 Identities = 56/98 (57%), Positives = 74/98 (75%)
 Frame = -3

Query: 295 CEEAFQQIKEHLGKPPLLSKPKEGETLIVYLAVSEYAISAVLVREEEGVQYPVYYVSKRM 116
           CEEAF+Q+K +L +P +L+KP+ GE L +Y++VSE AIS VLVR E   + P++YVSK  
Sbjct: 592 CEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENAISGVLVRVERSDERPIFYVSKSF 651

Query: 115 LDAETRYTSMEKLAYALILASRKLRPYFQAHKIEVRTA 2
            D ETRY  MEKLA A++ A+RKLRPYFQ+H I V T+
Sbjct: 652 SDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTS 689


>gb|AAO37471.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|41393196|gb|AAS01919.1| putative polyprotein [Oryza
            sativa Japonica Group] gi|108709171|gb|ABF96966.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1535

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/96 (55%), Positives = 71/96 (73%)
 Frame = -3

Query: 298  ECEEAFQQIKEHLGKPPLLSKPKEGETLIVYLAVSEYAISAVLVREEEGVQYPVYYVSKR 119
            EC+ AF ++K++L  PP+L  P  G  L++YLA S  A+SA LV+E E  Q PVY+VS+ 
Sbjct: 982  ECQAAFDKLKQYLQSPPVLISPPLGSELLLYLAASPVAVSAALVQETESGQKPVYFVSEA 1041

Query: 118  MLDAETRYTSMEKLAYALILASRKLRPYFQAHKIEV 11
            +  A+TRY  MEKLAYAL++ASRKL+ YFQAHK+ V
Sbjct: 1042 LQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIV 1077


>gb|AAO23092.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709049|gb|ABF96844.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 658

 Score =  109 bits (273), Expect = 2e-22
 Identities = 53/96 (55%), Positives = 70/96 (72%)
 Frame = -3

Query: 298 ECEEAFQQIKEHLGKPPLLSKPKEGETLIVYLAVSEYAISAVLVREEEGVQYPVYYVSKR 119
           EC+ AF ++K++L  PP L  P  G  L++YLA S  A+SA LV+E E  Q PVY+VS+ 
Sbjct: 49  ECQVAFAELKQYLQSPPALVSPTPGSELLLYLAASPVAVSAALVQETESGQKPVYFVSEA 108

Query: 118 MLDAETRYTSMEKLAYALILASRKLRPYFQAHKIEV 11
           +  A+TRY  MEKLAYAL++ASRKL+ YFQAHK+ V
Sbjct: 109 LQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIV 144