BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00046206
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               68   9e-10
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    68   9e-10
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    67   1e-09
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    66   3e-09
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    64   1e-08

>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = -1

Query: 361 LNRCSKQKMIRNFILNQDIHLFSLLETRVKAYKLGSVYINVCPGWCFSSNISKHEGGRII 182
           LN  ++Q+++R++I + ++ +   LET V      SV  +  PGW   SN    E GRI 
Sbjct: 54  LNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRIW 113

Query: 181 IGWNSRSFQVDILHMTSQLIHCKVTTDH-QKKFCCTFVYGLNDSKDRHVLWEDL 23
           I W+  S  V +   T Q++ C +      + F   FVYG N   DR  LWED+
Sbjct: 114 IVWDP-SISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDI 166


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = -1

Query: 361 LNRCSKQKMIRNFILNQDIHLFSLLETRVKAYKLGSVYINVCPGWCFSSNISKHEGGRII 182
           LN  ++Q+++R++I + ++ +   LET V      SV  +  PGW   SN    E GRI 
Sbjct: 11  LNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRIW 70

Query: 181 IGWNSRSFQVDILHMTSQLIHCKVTTDH-QKKFCCTFVYGLNDSKDRHVLWEDL 23
           I W+  S  V +   T Q++ C +      + F   FVYG N   DR  LWED+
Sbjct: 71  IVWDP-SISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDI 123


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
 Frame = -1

Query: 361 LNRCSKQKMIRNFILNQDIHLFSLLETRVKAYKLGSVYINVCPGWCFSSNISKHEGGRII 182
           LN   K K +++F+ +Q I L SL ETRV+    G +       W + +N +    GRI 
Sbjct: 11  LNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNYACSPRGRIW 70

Query: 181 IGWNSRSFQVDILHMTSQLIHCKVTTDH-QKKFCCTFVYGLNDSKDRHVLWEDL 23
           +GW +    +++L +T Q+I  +V   +    F    VYGL+   DR VLWE+L
Sbjct: 71  VGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVLWEEL 124


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
 Frame = -1

Query: 361 LNRCSKQKMIRNFILNQDIHLFSLLETRVKAYKLGSVYINVCPGWCFSSNISKHEGGRII 182
           LN+ SK  +I+ +I   +     L+ETRVK  K+  +   +   W   +N   +  GRI 
Sbjct: 11  LNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNRRGRIW 70

Query: 181 IGWNSRSFQVDILHMTSQLIHCKV-TTDHQKKFCCTFVYGLNDSKDRHVLWEDLQ 20
           + W  ++ ++  ++ + QL+ C V   D Q +F C+FVY  N  ++R VLW +L+
Sbjct: 71  VLWR-KNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197043|gb|AAM14892.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1412

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = -1

Query: 292 LLETRVKAYKLGSVYINVCPGWCFSSNISKHEGGRIIIGWNSRSFQVDILHMTSQLIHCK 113
           +LETRV   K+  ++  V   W   SN   +  GRI + W+S S Q+ ++  +SQ+I C 
Sbjct: 336 VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSS-SVQLQVIFKSSQMIVCL 394

Query: 112 VTTDHQK-KFCCTFVYGLNDSKDRHVLWEDLQKIANS 5
           V  +H   +F C+F+Y  N  ++R  LW+DL  + NS
Sbjct: 395 VRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNS 431