BLASTX nr result

ID: Cnidium21_contig00046204 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00046204
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002880772.1| hypothetical protein ARALYDRAFT_481487 [Arab...    65   6e-09
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    64   1e-08
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi...    64   1e-08
dbj|BAF00529.1| hypothetical protein [Arabidopsis thaliana]            64   1e-08
ref|NP_180196.1| CTC-interacting domain 7 protein [Arabidopsis t...    64   1e-08

>ref|XP_002880772.1| hypothetical protein ARALYDRAFT_481487 [Arabidopsis lyrata subsp.
           lyrata] gi|297326611|gb|EFH57031.1| hypothetical protein
           ARALYDRAFT_481487 [Arabidopsis lyrata subsp. lyrata]
          Length = 570

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/37 (78%), Positives = 32/37 (86%)
 Frame = -2

Query: 146 FICVGTGHHTRGFRTRERLPTAVQNYLLKEEGLDFSD 36
           FICVGTGHHTRG RT  RLP AVQ YLL+EEGLD+S+
Sbjct: 523 FICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSE 559


>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = -2

Query: 146 FICVGTGHHTRGFRTRERLPTAVQNYLLKEEGLDFSD 36
           +ICVGTGHHTRG RT  RLP AVQ YL++EEGLDFS+
Sbjct: 531 YICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSE 567


>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = -2

Query: 146 FICVGTGHHTRGFRTRERLPTAVQNYLLKEEGLDFSD 36
           +ICVGTGHHTRG RT  RLP AVQ YL++EEGLDFS+
Sbjct: 531 YICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSE 567


>dbj|BAF00529.1| hypothetical protein [Arabidopsis thaliana]
          Length = 567

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = -2

Query: 146 FICVGTGHHTRGFRTRERLPTAVQNYLLKEEGLDFSD 36
           +ICVGTGHHTRG RT  RLP AVQ YLL+EEGLD+S+
Sbjct: 520 YICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSE 556


>ref|NP_180196.1| CTC-interacting domain 7 protein [Arabidopsis thaliana]
           gi|3075391|gb|AAC14523.1| unknown protein [Arabidopsis
           thaliana] gi|133778822|gb|ABO38751.1| At2g26280
           [Arabidopsis thaliana] gi|330252724|gb|AEC07818.1|
           CTC-interacting domain 7 protein [Arabidopsis thaliana]
          Length = 567

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = -2

Query: 146 FICVGTGHHTRGFRTRERLPTAVQNYLLKEEGLDFSD 36
           +ICVGTGHHTRG RT  RLP AVQ YLL+EEGLD+S+
Sbjct: 520 YICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSE 556


Top