BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00046197
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   315   4e-84
ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   314   8e-84
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   309   3e-82
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   302   2e-80
ref|NP_197340.1| pentatricopeptide repeat-containing protein [Ar...   301   4e-80

>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
           gi|449518358|ref|XP_004166209.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  315 bits (807), Expect = 4e-84
 Identities = 144/194 (74%), Positives = 169/194 (87%)
 Frame = -3

Query: 582 TTEIYNSLLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFL 403
           T E+YN+LL+ALCEVK F GAYALIRRM+RKG  PDKKTY  LV GWCSAGK+KEAQEFL
Sbjct: 177 TVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFL 236

Query: 402 EEMSQKGFNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKS 223
           EEMSQKGFNPP+RGRDLL++GLLNAGY+ESAK +VRKMTKEG VPD+ TFNSL + +C S
Sbjct: 237 EEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNS 296

Query: 222 GELEFCIDIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLY 43
           GE++FCI+I+H VC+LGLCPDI+TYKI+I A SK  +ID+A  +LH  IEDGH PFPSLY
Sbjct: 297 GEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLY 356

Query: 42  APILKGLCRRGQFD 1
            PILKG+C+RGQFD
Sbjct: 357 GPILKGMCKRGQFD 370



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 42/187 (22%), Positives = 82/187 (43%)
 Frame = -3

Query: 561 LLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFLEEMSQKG 382
           L+  L      + A  ++R+M ++G VPD  T++ L++  C++G++        E+ + G
Sbjct: 254 LVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLG 313

Query: 381 FNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKSGELEFCI 202
             P +    +LI      G I+ A  L+    ++G VP  + +  + + +CK G+ +   
Sbjct: 314 LCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAF 373

Query: 201 DIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLYAPILKGL 22
             +  +   G  P+   Y ++I    +  +  DA   L    E G  P    +  +  GL
Sbjct: 374 CFFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGL 433

Query: 21  CRRGQFD 1
              G+ D
Sbjct: 434 KNCGKHD 440


>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
           gi|296085168|emb|CBI28663.3| unnamed protein product
           [Vitis vinifera]
          Length = 454

 Score =  314 bits (804), Expect = 8e-84
 Identities = 147/194 (75%), Positives = 171/194 (88%)
 Frame = -3

Query: 582 TTEIYNSLLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFL 403
           T E+YNSLL+ALCEVK F GAYALIRRM+RKG  P+K+TYSVLVNGWC+AGK+KEAQ+FL
Sbjct: 176 TIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFL 235

Query: 402 EEMSQKGFNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKS 223
           EEMS+KGFNPPVRGRDLL+DGLLNAGY+E+AK +VRKMTKEG  PDV T NS+ EA+CK+
Sbjct: 236 EEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKA 295

Query: 222 GELEFCIDIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLY 43
           GE EFCIDIY+ VCRLG+ P++ TYKIMI AA K  +ID+A  ILHRSIEDGH+PFPSLY
Sbjct: 296 GEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLY 355

Query: 42  APILKGLCRRGQFD 1
           API+K LCR GQFD
Sbjct: 356 APIIKALCRNGQFD 369



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 37/187 (19%), Positives = 82/187 (43%)
 Frame = -3

Query: 561 LLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFLEEMSQKG 382
           L+  L      + A  ++R+M ++G  PD +T + ++   C AG+ +   +   ++ + G
Sbjct: 253 LVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLG 312

Query: 381 FNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKSGELEFCI 202
            +P V    ++I      G I+ A  ++ +  ++G  P  + +  + +A+C++G+ +   
Sbjct: 313 VSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAF 372

Query: 201 DIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLYAPILKGL 22
             +  +   G  P+   Y ++I    +  +  DA   L    E    P    +  +  GL
Sbjct: 373 CFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVTDGL 432

Query: 21  CRRGQFD 1
              G+ D
Sbjct: 433 KNCGKHD 439


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
           predicted protein [Populus trichocarpa]
          Length = 422

 Score =  309 bits (791), Expect = 3e-82
 Identities = 140/191 (73%), Positives = 170/191 (89%)
 Frame = -3

Query: 573 IYNSLLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFLEEM 394
           +YNSLL+ALCEVK F GAYAL+RRM+RKG VPDK+TY VLVNGWCS+GKL+EA+ FLEEM
Sbjct: 148 VYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRTYGVLVNGWCSSGKLREAKGFLEEM 207

Query: 393 SQKGFNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKSGEL 214
           S+KGFNPPVRGRDLLI+GLLNAGY+ESAK +VR+M KEG VPDV TFNS+ EA+C +GE+
Sbjct: 208 SKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEV 267

Query: 213 EFCIDIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLYAPI 34
           +FC+D+YH+VC+LG CPDI++YKI+I A SK  +ID+A  +LH  IEDGHKPFPSLYAPI
Sbjct: 268 DFCVDMYHSVCKLGFCPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPI 327

Query: 33  LKGLCRRGQFD 1
           +KG+ RRGQFD
Sbjct: 328 IKGMFRRGQFD 338



 Score = 65.1 bits (157), Expect = 8e-09
 Identities = 42/187 (22%), Positives = 83/187 (44%)
 Frame = -3

Query: 561 LLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFLEEMSQKG 382
           L+  L      + A  ++RRM+++G VPD  T++ +V   C+AG++    +    + + G
Sbjct: 222 LIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLG 281

Query: 381 FNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKSGELEFCI 202
           F P +    +LI  +   G I+ A  L+  + ++G  P  + +  + + + + G+ +   
Sbjct: 282 FCPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAF 341

Query: 201 DIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLYAPILKGL 22
             +  +   G  P+   Y +MI    +  K  +A   L    E G  P    +  +  GL
Sbjct: 342 CFFSEMKVKGHPPNRPVYTMMITMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGL 401

Query: 21  CRRGQFD 1
              G+ D
Sbjct: 402 KNCGKHD 408


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297317651|gb|EFH48073.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 459

 Score =  302 bits (774), Expect = 2e-80
 Identities = 138/194 (71%), Positives = 168/194 (86%)
 Frame = -3

Query: 582 TTEIYNSLLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFL 403
           T ++YN+LL+ALC+VK F GAYALIRRM+RKG  PDK+TY++LVNGWCSAGK+KEAQEFL
Sbjct: 181 TVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFL 240

Query: 402 EEMSQKGFNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKS 223
           +EMS+KGFNPP RGRDLLI+GLLNAGY+ESAK +V KMTK GFVPD+ TFN+L EA+ KS
Sbjct: 241 DEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKS 300

Query: 222 GELEFCIDIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLY 43
           GE+EFCI++Y+  C+LGLC DIDTYK +I A SK  KID+A  +L+  +EDGHKPFPSLY
Sbjct: 301 GEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLY 360

Query: 42  APILKGLCRRGQFD 1
           API+KG+CR G FD
Sbjct: 361 APIIKGMCRNGMFD 374


>ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
           gi|332005166|gb|AED92549.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  301 bits (772), Expect = 4e-80
 Identities = 138/194 (71%), Positives = 167/194 (86%)
 Frame = -3

Query: 582 TTEIYNSLLYALCEVKNFQGAYALIRRMVRKGGVPDKKTYSVLVNGWCSAGKLKEAQEFL 403
           T ++YNSLL+ALC+VK F GAYALIRRM+RKG  PDK+TY++LVNGWCSAGK+KEAQEFL
Sbjct: 181 TVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFL 240

Query: 402 EEMSQKGFNPPVRGRDLLIDGLLNAGYIESAKGLVRKMTKEGFVPDVATFNSLAEAVCKS 223
           +EMS++GFNPP RGRDLLI+GLLNAGY+ESAK +V KMTK GFVPD+ TFN L EA+ KS
Sbjct: 241 DEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKS 300

Query: 222 GELEFCIDIYHAVCRLGLCPDIDTYKIMIMAASKTDKIDDALVILHRSIEDGHKPFPSLY 43
           GE+EFCI++Y+  C+LGLC DIDTYK +I A SK  KID+A  +L+  +EDGHKPFPSLY
Sbjct: 301 GEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLY 360

Query: 42  APILKGLCRRGQFD 1
           API+KG+CR G FD
Sbjct: 361 APIIKGMCRNGMFD 374