BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00045940
         (639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               123   3e-26
gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...   109   5e-22
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   105   9e-21
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             104   1e-20
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...   101   1e-19

>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  123 bits (308), Expect = 3e-26
 Identities = 68/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%)
 Frame = +2

Query: 32   HSIYTISKGLATIITFTDADYEGINPNHTEALVVSLDVANNEVKRILVDNGSSVDICFKH 211
            HS  T  +     ITFTD D+  I+P+  + +V+++++    + ++LVD GSSVDI +  
Sbjct: 609  HSTPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWE 668

Query: 212  TWDRLKLDDAKLETCPDETPLYGFGHHAVPIAGIARLPVYFGESPRQVCRVIKFYVINTA 391
            T+ ++K+ +A+++  P    + GF    V   G   L   FG+        I++ ++N  
Sbjct: 669  TFKKMKIPEAEIQ--PYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNAN 726

Query: 392  SSYNMILGRPTLNLLKAITSTPHLKIKFPTLNG-IGEIKGDSETSKRCYGIALTLGATEP 568
            +SYN++LGRP++N LKAI STPHL +KFP++NG I  +  D +T++ CY  +L +   EP
Sbjct: 727  TSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASLKV---EP 783

Query: 569  SNVRKKKANRKRQEKRRRHAEHQ 637
            +      +  +  E+R R  E +
Sbjct: 784  TRRLYTTSAERTTERRGRSTERR 806


>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score =  109 bits (272), Expect = 5e-22
 Identities = 59/155 (38%), Positives = 92/155 (59%)
 Frame = +2

Query: 71  ITFTDADYEGINPNHTEALVVSLDVANNEVKRILVDNGSSVDICFKHTWDRLKLDDAKLE 250
           I+F + +   +   H +ALV++LDVAN EV RIL+D GSSVD+ F  T +++ +    + 
Sbjct: 515 ISFNEEETRHLERPHDDALVITLDVANFEVSRILIDTGSSVDLIFLSTLEKMGISRGDIV 574

Query: 251 TCPDETPLYGFGHHAVPIAGIARLPVYFGESPRQVCRVIKFYVINTASSYNMILGRPTLN 430
             P  +PL  F   +    G  +LPV      ++V +++ F V +  ++YN+ILG P + 
Sbjct: 575 GPP--SPLVAFTSESAMSLGTIKLPVL----AKKVSKIVDFVVFDKPAAYNIILGTPWIY 628

Query: 431 LLKAITSTPHLKIKFPTLNGIGEIKGDSETSKRCY 535
            +KA+ ST +  IKFPT NG+  I+GD E S+ CY
Sbjct: 629 RMKAVPSTYYQCIKFPTSNGVETIRGDQEASRTCY 663


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  105 bits (261), Expect = 9e-21
 Identities = 66/173 (38%), Positives = 91/173 (52%), Gaps = 2/173 (1%)
 Frame = +2

Query: 89   DYEGINPNHTEALVVSLDVANNEVKRILVDNGSSVDICFKHTWDRLKLDDAKLETCPDET 268
            D EGI   H +ALV+   VA  E++RILVD GSSVDI FK   D + + D KLE     T
Sbjct: 540  DEEGILYLHEDALVIKAMVAAIELRRILVDTGSSVDILFKSALDDMGISDLKLERT--NT 597

Query: 269  PLYGFGHHAVPIAGIARLPVYFGESPRQVCRVIKFYVINTASSYNMILGRPTLNLLKAIT 448
             L GFG   +   GI  LP+  G  P +   ++ F V+   S Y MILGRP + + + + 
Sbjct: 598  SLKGFGGGRLTPMGINELPITVGSKPFERIVMLYFVVVEERSPYQMILGRPFIRISQCVI 657

Query: 449  STPHLKIKFPTLNGIGEIKGDSETSKRCYGIAL--TLGATEPSNVRKKKANRK 601
            ST +L +K+     +G +KG  + ++ CY  A   TL  T   N    K  R+
Sbjct: 658  STHYLALKYRVNGVVGVVKGVQKMTRSCYATAAKETLQVTSLDNRGDSKKGRQ 710


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  104 bits (260), Expect = 1e-20
 Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
 Frame = +2

Query: 71   ITFTDADYEGINPNHTEALVVSLDVANNEVKRILVDNGSSVDICFKHTWDRLKLDDAKLE 250
            I+FTD D EG++  H + LVV L ++++ V R+L+D GSSVD+ FK     + + D +++
Sbjct: 600  ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659

Query: 251  TCPDETPLYGFGHHAVPIAGIARLPVYFGESPRQVCRVIKFYVINTASSYNMILGRPTLN 430
              P   PL GF    V   G  +LP++ G     +   +KF VI   + YN+ILG P ++
Sbjct: 660  --PVSKPLAGFDGDFVMTIGTIKLPIFVG----GLIAWVKFVVIGKPAVYNVILGTPWIH 713

Query: 431  LLKAITSTPHLKIKFPTLNGIGEIKG--DSETSKRCY 535
             ++AI ST H  +KFPT NGI  ++   +++T  R Y
Sbjct: 714  QMQAIPSTYHQCVKFPTHNGIFTLRAPKEAKTPSRSY 750


>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score =  101 bits (252), Expect = 1e-19
 Identities = 58/155 (37%), Positives = 89/155 (57%)
 Frame = +2

Query: 71  ITFTDADYEGINPNHTEALVVSLDVANNEVKRILVDNGSSVDICFKHTWDRLKLDDAKLE 250
           ITF +++   ++  H +ALV+ +DV N E+  I+VD GSSVD+ F   + R    D+KL+
Sbjct: 47  ITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQ 106

Query: 251 TCPDETPLYGFGHHAVPIAGIARLPVYFGESPRQVCRVIKFYVINTASSYNMILGRPTLN 430
               +TPL GF        G  +LP       R V ++  F V++  + +N ILGRP L+
Sbjct: 107 G--RKTPLTGFAGDTTFSIGTIQLPTI----ARGVRQLTNFLVVDKKAPFNAILGRPWLH 160

Query: 431 LLKAITSTPHLKIKFPTLNGIGEIKGDSETSKRCY 535
           ++KA+ ST H  IKFP+  GI  + G   +S++CY
Sbjct: 161 VMKAVPSTYHQCIKFPSYKGIAVVYGSQRSSRKCY 195