BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00045740
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACA10611.1| RNA polymerase C [Tapinanthus sp. OM 825]               59   7e-07
ref|YP_002456478.1| RNA polymerase beta [Trifolium subterraneum]...    58   2e-06
gb|ADT63246.1| RNA polymerase beta subunit [Juncus dudleyi]            57   3e-06
gb|ADD47681.1| RNA polymerase C [Juncus effusus] gi|290584874|gb...    57   3e-06
gb|ABU79850.1| RNA polymerase C [Amorphophallus titanum]               57   3e-06

>gb|ACA10611.1| RNA polymerase C [Tapinanthus sp. OM 825]
          Length = 160

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 27/39 (69%), Positives = 34/39 (87%)
 Frame = -1

Query: 315 SIIGKQVYYSGHSIIVMGPSLSLHQCELYREIAIELSHI 199
           +++GK+V YSG S+I++GPSLSLHQC L REIAIEL HI
Sbjct: 5   TLLGKRVDYSGRSVIIVGPSLSLHQCGLPREIAIELFHI 43


>ref|YP_002456478.1| RNA polymerase beta [Trifolium subterraneum]
           gi|193788962|gb|ACF20558.1| RNA polymerase beta
           [Trifolium subterraneum]
          Length = 682

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = -1

Query: 315 SIIGKQVYYSGHSIIVMGPSLSLHQCELYREIAIELSH 202
           +++GK+V YSG S+IV+GPSLSLHQC L REIAIEL H
Sbjct: 370 TLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFH 407


>gb|ADT63246.1| RNA polymerase beta subunit [Juncus dudleyi]
          Length = 164

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = -1

Query: 315 SIIGKQVYYSGHSIIVMGPSLSLHQCELYREIAIELSHIDCVNPMDR 175
           +++GK+V YSG S+IV+GPSLSLHQC L REIAIEL  I  +  + R
Sbjct: 2   TLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQIFLIRTLIR 48


>gb|ADD47681.1| RNA polymerase C [Juncus effusus] gi|290584874|gb|ADD47682.1| RNA
           polymerase C [Juncus effusus]
          Length = 164

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = -1

Query: 315 SIIGKQVYYSGHSIIVMGPSLSLHQCELYREIAIELSHIDCVNPMDR 175
           +++GK+V YSG S+IV+GPSLSLHQC L REIAIEL  I  +  + R
Sbjct: 2   TLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQIFLIRTLIR 48


>gb|ABU79850.1| RNA polymerase C [Amorphophallus titanum]
          Length = 172

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = -1

Query: 315 SIIGKQVYYSGHSIIVMGPSLSLHQCELYREIAIELSHIDCVNPMDR 175
           +++GK+V YSG S+IV+GPSLSLHQC L REIAIEL  I  +  + R
Sbjct: 33  TLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQIFVIRGLIR 79