BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00045087
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|2...   280   1e-73
ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi...   279   2e-73
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi...   276   2e-72
ref|XP_002869359.1| pentatricopeptide repeat-containing protein ...   274   7e-72
ref|NP_567856.1| pentatricopeptide repeat-containing protein [Ar...   271   8e-71

>ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|222853828|gb|EEE91375.1|
           predicted protein [Populus trichocarpa]
          Length = 670

 Score =  280 bits (717), Expect = 1e-73
 Identities = 130/196 (66%), Positives = 163/196 (83%), Gaps = 1/196 (0%)
 Frame = -2

Query: 587 SCKEFGHLEDAIKIYGSI-RNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVAL 411
           SCKE GHL+ A+KIY  + ++  +PNLHI  TMIDIYT M QF E E LYMKLKSSG+ L
Sbjct: 298 SCKELGHLDSAVKIYSLMPKSDDRPNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGL 357

Query: 410 DLIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDL 231
           D+IAFSIV+RMYVK+GSL+DACSVLE ++   D++PD+YL RDMLR+YQ+  M DKL+DL
Sbjct: 358 DVIAFSIVIRMYVKAGSLKDACSVLETMEKEKDMVPDIYLFRDMLRVYQQCGMMDKLNDL 417

Query: 230 YYKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
           Y+KILK+G+  DQE+YNCLINCCARALPV EL+R+F+EMLQRGF+PNTITFNVMLDVY K
Sbjct: 418 YFKILKSGVVWDQELYNCLINCCARALPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAK 477

Query: 50  CRLFKKVGRIYRLAKR 3
            +LF K   ++ +A++
Sbjct: 478 AKLFNKARELFMMARK 493



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 42/150 (28%), Positives = 71/150 (47%)
 Frame = -2

Query: 500 STMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSLEDACSVLELIDN 321
           +T+I  Y     FK   +    ++  G ++ L A++ V+  Y K G +E   SVL+ + N
Sbjct: 503 NTIIAAYGRKRDFKNMASTIHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKN 562

Query: 320 RSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYNCLINCCARALPVD 141
            S    D Y    M+ IY  L   D+++ +  ++ + G+  D   YN LI     A  V+
Sbjct: 563 -SSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECGLGPDLCSYNTLIKAYGIAGMVE 621

Query: 140 ELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
           +   +  EM Q G EP+ IT+  ++    K
Sbjct: 622 DAVGLVKEMRQNGVEPDKITYTNLITTLQK 651


>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Vitis vinifera]
            gi|297745081|emb|CBI38673.3| unnamed protein product
            [Vitis vinifera]
          Length = 900

 Score =  279 bits (714), Expect = 2e-73
 Identities = 135/195 (69%), Positives = 162/195 (83%)
 Frame = -2

Query: 587  SCKEFGHLEDAIKIYGSIRNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALD 408
            SCKE G LE+A+KIY  + N  KPNLHIM TMIDIY+ + +F +AENLY+KLKSS ++LD
Sbjct: 530  SCKELGRLENAVKIYSQMPNK-KPNLHIMCTMIDIYSTLGRFSDAENLYLKLKSSEISLD 588

Query: 407  LIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDLY 228
            +IAFSIVVRMYVKSGSL+DACSVLE +D + +I+PD+YL  DMLRIYQ+  M DKL DLY
Sbjct: 589  MIAFSIVVRMYVKSGSLKDACSVLETMDEQKNIVPDIYLFCDMLRIYQQCGMLDKLQDLY 648

Query: 227  YKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGKC 48
            Y+ILKTG+  D EMYNC+INCCARALPVDEL+R+FDEML  GF PNTIT NVMLDVYGK 
Sbjct: 649  YRILKTGVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKS 708

Query: 47   RLFKKVGRIYRLAKR 3
            RLFKK  ++  LA++
Sbjct: 709  RLFKKARKVLWLARK 723



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 36/150 (24%), Positives = 73/150 (48%)
 Frame = -2

Query: 500 STMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSLEDACSVLELIDN 321
           S MI IYT M+ + +AE +   ++   V L+L  + +++  Y + G L++A  VL  + N
Sbjct: 281 SAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQN 340

Query: 320 RSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYNCLINCCARALPVD 141
            +   P++     ++  Y + +  D    ++  +   G+  D+  Y  +I    RA    
Sbjct: 341 -AGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYK 399

Query: 140 ELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
           E    ++E+ + GF+PN+     M+++  K
Sbjct: 400 EAEWYYNELKRLGFKPNSSNLYTMINLQAK 429



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
 Frame = -2

Query: 587 SCKEFGHLEDAIKIYG-SIRNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVAL 411
           +C + GH+E   K +   + N  +PN+     ++ +Y       ++E  + +++S G+  
Sbjct: 217 ACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAFSQMRSFGITC 276

Query: 410 DLIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSD- 234
              A+S ++ +Y +    + A  V++ I     IL     L + L +    + + KL + 
Sbjct: 277 QS-AYSAMITIYTRMSLYDKAEEVIDFIQEDKVILN----LENWLVLLNAYSQQGKLQEA 331

Query: 233 --LYYKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDV 60
             + + +   G   +   YN LI    +A  +D    IF  +   G EP+  T+  M++ 
Sbjct: 332 ERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEG 391

Query: 59  YGKCRLFKKVGRIYRLAKR 3
           +G+   +K+    Y   KR
Sbjct: 392 WGRAENYKEAEWYYNELKR 410


>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
            chloroplastic-like [Cucumis sativus]
          Length = 894

 Score =  276 bits (706), Expect = 2e-72
 Identities = 130/196 (66%), Positives = 164/196 (83%), Gaps = 1/196 (0%)
 Frame = -2

Query: 587  SCKEFGHLEDAIKIYGSI-RNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVAL 411
            SCKE GHLE+AIKIY  + +  +KPNLHI  TMIDIY++M +F + E LY+ L+SSG+ L
Sbjct: 522  SCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPL 581

Query: 410  DLIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDL 231
            DLIA+++VVRMYVK+GSLEDACSVL+L+  + DI+PD+YLLRDMLRIYQR  M  KL+DL
Sbjct: 582  DLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADL 641

Query: 230  YYKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
            YY+ILK+G+  DQEMYNC+INCC+RALPVDEL+R+FDEMLQ GF PNT+T NVMLDVYGK
Sbjct: 642  YYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGK 701

Query: 50   CRLFKKVGRIYRLAKR 3
             +LF K   ++ LA++
Sbjct: 702  SKLFTKARNLFGLAQK 717



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 40/145 (27%), Positives = 72/145 (49%)
 Frame = -2

Query: 500  STMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSLEDACSVLELIDN 321
            +TMI +Y     FK   +   K+K +G ++ L A++ ++  Y K   +E+  SVL+ +  
Sbjct: 727  NTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQE 786

Query: 320  RSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYNCLINCCARALPVD 141
             S    D Y    M+ IY      D+++++  ++   G+  D   YN LI     A  V+
Sbjct: 787  TSSEC-DHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVE 845

Query: 140  ELTRIFDEMLQRGFEPNTITFNVML 66
            E  ++  EM ++  EP+ IT+  M+
Sbjct: 846  EAAQLVKEMREKRIEPDRITYINMI 870



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
 Frame = -2

Query: 518 PNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSLEDACSV 339
           PNL     M++ Y    + +EAE ++  ++ +G + ++IA++ ++  Y K+ +++ A  +
Sbjct: 302 PNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRL 361

Query: 338 LELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTG--IPLDQEMYNCLINC 165
              I N S + PD    R M+  + R     K+++ YYK LK    +P    ++  LIN 
Sbjct: 362 FLGIKN-SGVEPDETTYRSMIEGWGRAG-NYKMAEWYYKELKRRGYMPNSSNLFT-LINL 418

Query: 164 CARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGKCRLFKKV-----GRIYR 15
            A+        +  ++ML+ G  P++I  NV L  Y K R  K V     G  YR
Sbjct: 419 QAKHEDEAGTLKTLNDMLKIGCRPSSIVGNV-LQAYEKARRMKSVPVLLTGSFYR 472



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
 Frame = -2

Query: 518  PNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSLEDACSV 339
            PN   ++ M+D+Y     F +A NL+   +  G+ +D I+++ ++ +Y K+   ++  S 
Sbjct: 687  PNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMISVYGKNKDFKNMSST 745

Query: 338  LELID-NRSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYNCLINCC 162
            ++ +  N   +  + Y    ML  Y +    +    +  ++ +T    D   YN +IN  
Sbjct: 746  VQKMKFNGFSVSLEAY--NCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIY 803

Query: 161  ARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGKCRLFKKVGRIYR 15
                 +DE+  +  E+   G EP+  ++N ++  YG   + ++  ++ +
Sbjct: 804  GEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVK 852


>ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297315195|gb|EFH45618.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 906

 Score =  274 bits (701), Expect = 7e-72
 Identities = 133/196 (67%), Positives = 161/196 (82%), Gaps = 1/196 (0%)
 Frame = -2

Query: 587  SCKEFGHLEDAIKIYGSIRNSSKP-NLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVAL 411
            SCKE G L DA+K+Y     S +  NLHI STMIDIYTVM +F EAE LY+ LKSSGV L
Sbjct: 534  SCKESGQLTDAVKLYNHTMESDEEINLHITSTMIDIYTVMGEFGEAEKLYLNLKSSGVVL 593

Query: 410  DLIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDL 231
            D I FSIVVRMYVK+GSLE+ACSVLE++D + DI+PDVYL RDMLRIYQ+ +++DKL  L
Sbjct: 594  DRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHL 653

Query: 230  YYKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
            YY+I K+GI  DQEMYNC+INCCARALP+DEL+R F+EM++ GF PNT+TFNV+LDVYGK
Sbjct: 654  YYRIQKSGIHWDQEMYNCVINCCARALPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGK 713

Query: 50   CRLFKKVGRIYRLAKR 3
             +LFKKV  ++ LAKR
Sbjct: 714  AKLFKKVNELFLLAKR 729



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
 Frame = -2

Query: 536  IRNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSL 357
            IR    PN    + ++D+Y     FK+   L++  K  GV +D+I+++ ++  Y K+   
Sbjct: 693  IRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAYGKNKDF 751

Query: 356  EDACSVLELID-NRSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYN 180
             +  S ++ +  +   +  + Y    +L  Y +    +K   +  ++ K+    D   YN
Sbjct: 752  TNMSSAIKNMQFDGFSVSLEAY--NTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYN 809

Query: 179  CLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYG 54
             +IN       +DE+  +  E+ + G  P+  ++N ++  YG
Sbjct: 810  IMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYG 851



 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 41/193 (21%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
 Frame = -2

Query: 572  GHLEDAIKIYGSIRNSSK---PNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALDLI 402
            G LE+A  +   I +  K   P++++   M+ IY   +   + ++LY +++ SG+  D  
Sbjct: 609  GSLEEACSVL-EIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQE 667

Query: 401  AFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYK 222
             ++ V+    ++  L++     E +  R    P+      +L +Y +  +  K+++L+  
Sbjct: 668  MYNCVINCCARALPLDELSRTFEEMI-RYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLL 726

Query: 221  ILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGKCRL 42
              + G+ +D   YN +I    +      ++     M   GF  +   +N +LD YGK + 
Sbjct: 727  AKRHGV-VDVISYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQ 785

Query: 41   FKKVGRIYRLAKR 3
             +K   I +  K+
Sbjct: 786  MEKFRSILKRMKK 798


>ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|223635625|sp|O65567.2|PP342_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g30825, chloroplastic; Flags: Precursor
            gi|332660415|gb|AEE85815.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score =  271 bits (692), Expect = 8e-71
 Identities = 131/196 (66%), Positives = 161/196 (82%), Gaps = 1/196 (0%)
 Frame = -2

Query: 587  SCKEFGHLEDAIKIYG-SIRNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVAL 411
            SCKE G L DA+KIY   + +  + NLHI STMIDIYTVM +F EAE LY+ LKSSGV L
Sbjct: 532  SCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVL 591

Query: 410  DLIAFSIVVRMYVKSGSLEDACSVLELIDNRSDILPDVYLLRDMLRIYQRLNMRDKLSDL 231
            D I FSIVVRMYVK+GSLE+ACSVLE++D + DI+PDVYL RDMLRIYQ+ +++DKL  L
Sbjct: 592  DRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHL 651

Query: 230  YYKILKTGIPLDQEMYNCLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYGK 51
            YY+I K+GI  +QEMYNC+INCCARALP+DEL+  F+EM++ GF PNT+TFNV+LDVYGK
Sbjct: 652  YYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGK 711

Query: 50   CRLFKKVGRIYRLAKR 3
             +LFKKV  ++ LAKR
Sbjct: 712  AKLFKKVNELFLLAKR 727



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
 Frame = -2

Query: 536  IRNSSKPNLHIMSTMIDIYTVMNQFKEAENLYMKLKSSGVALDLIAFSIVVRMYVKSGSL 357
            IR    PN    + ++D+Y     FK+   L++  K  GV +D+I+++ ++  Y K+   
Sbjct: 691  IRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAYGKNKDY 749

Query: 356  EDACSVLELID-NRSDILPDVYLLRDMLRIYQRLNMRDKLSDLYYKILKTGIPLDQEMYN 180
             +  S ++ +  +   +  + Y    +L  Y +    +K   +  ++ K+    D   YN
Sbjct: 750  TNMSSAIKNMQFDGFSVSLEAY--NTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYN 807

Query: 179  CLINCCARALPVDELTRIFDEMLQRGFEPNTITFNVMLDVYG 54
             +IN       +DE+  +  E+ + G  P+  ++N ++  YG
Sbjct: 808  IMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYG 849