BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00045028
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   136   2e-30
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   130   8e-29
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   129   2e-28
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   127   1e-27
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   127   1e-27

>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  136 bits (342), Expect = 2e-30
 Identities = 62/128 (48%), Positives = 89/128 (69%)
 Frame = -2

Query: 386  NRSPGPDGFTPEFFVKAWPIVGIHVTDAILHFFAENHMPRMINSTAITLVPKSANASTLG 207
            N+SPGPDG+T EFF + W ++G  VT AI  FF    +P+ +NST + L+PK   A  + 
Sbjct: 734  NKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMK 793

Query: 206  QFRPISCCNVLYKCIAKLLALRMRKIMPSLVSPNQAAFIPGRKIGDDVMLAQSLCRDYHL 27
             +RPISCCNVLYK I+KLLA R++ ++P  ++PNQ+AFI  R + ++++LA  L +DYH 
Sbjct: 794  DYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHK 853

Query: 26   NSGSPRFA 3
            +  SPR A
Sbjct: 854  DGLSPRCA 861


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  130 bits (328), Expect = 8e-29
 Identities = 60/128 (46%), Positives = 89/128 (69%)
 Frame = -2

Query: 386 NRSPGPDGFTPEFFVKAWPIVGIHVTDAILHFFAENHMPRMINSTAITLVPKSANASTLG 207
           ++SPGPDG+T EF+  +W I+G  V  AI  FFA+  +P+ +NST + L+PK   A  + 
Sbjct: 189 DKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIK 248

Query: 206 QFRPISCCNVLYKCIAKLLALRMRKIMPSLVSPNQAAFIPGRKIGDDVMLAQSLCRDYHL 27
            +RPISCCNVLYK I+K+LA R+++I+P  +  NQ+AF+  R + ++V+LA  L +DYH 
Sbjct: 249 DYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHK 308

Query: 26  NSGSPRFA 3
           +S S R A
Sbjct: 309 DSISTRCA 316


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1352

 Score =  129 bits (325), Expect = 2e-28
 Identities = 59/128 (46%), Positives = 90/128 (70%)
 Frame = -2

Query: 386 NRSPGPDGFTPEFFVKAWPIVGIHVTDAILHFFAENHMPRMINSTAITLVPKSANASTLG 207
           ++SPGPDG+T EFF  AWP++G  +  AI  FF +  +P+ IN+T + L+ K    S + 
Sbjct: 615 HKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMK 674

Query: 206 QFRPISCCNVLYKCIAKLLALRMRKIMPSLVSPNQAAFIPGRKIGDDVMLAQSLCRDYHL 27
            +RPISCCNVLYK ++KL+A R+++I+P+ ++PNQ+AFI  R + ++++LA  L +DYH 
Sbjct: 675 DYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHK 734

Query: 26  NSGSPRFA 3
            S S R A
Sbjct: 735 ESISSRSA 742


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  127 bits (318), Expect = 1e-27
 Identities = 58/119 (48%), Positives = 82/119 (68%)
 Frame = -2

Query: 389 TNRSPGPDGFTPEFFVKAWPIVGIHVTDAILHFFAENHMPRMINSTAITLVPKSANASTL 210
           +N+SPGPDG+T EFF K W IVG  +  A+  FF    +    NSTA+T+VPK  NA  +
Sbjct: 460 SNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRI 519

Query: 209 GQFRPISCCNVLYKCIAKLLALRMRKIMPSLVSPNQAAFIPGRKIGDDVMLAQSLCRDY 33
            +FRPISCCN +YK I+KLLA R+  I+P  +SP+Q+AF+ GR + ++V+LA  L + +
Sbjct: 520 TEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGF 578


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  127 bits (318), Expect = 1e-27
 Identities = 58/128 (45%), Positives = 85/128 (66%)
 Frame = -2

Query: 386  NRSPGPDGFTPEFFVKAWPIVGIHVTDAILHFFAENHMPRMINSTAITLVPKSANASTLG 207
            N+SPGPDG+T EFF   W + G     AI  FF +  +P+ +N+T + L+PK   A  + 
Sbjct: 765  NKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMK 824

Query: 206  QFRPISCCNVLYKCIAKLLALRMRKIMPSLVSPNQAAFIPGRKIGDDVMLAQSLCRDYHL 27
             +RPISCCNVLYK I+K+LA R++ ++PS +  NQ+AF+  R + ++V+LA  L +DYH 
Sbjct: 825  DYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHK 884

Query: 26   NSGSPRFA 3
             S +PR A
Sbjct: 885  ESVTPRCA 892