BLASTX nr result

ID: Cnidium21_contig00045018 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00045018
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522527.1| ATP-dependent RNA helicase, putative [Ricinu...   299   2e-79
ref|XP_004148780.1| PREDICTED: probable ATP-dependent RNA helica...   293   2e-77
ref|XP_002276679.2| PREDICTED: probable ATP-dependent RNA helica...   291   3e-77
emb|CBI30650.3| unnamed protein product [Vitis vinifera]              291   3e-77
ref|XP_003593709.1| ATP-dependent RNA helicase dhx8 [Medicago tr...   281   3e-74

>ref|XP_002522527.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223538218|gb|EEF39827.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 696

 Score =  299 bits (765), Expect = 2e-79
 Identities = 148/178 (83%), Positives = 162/178 (91%), Gaps = 3/178 (1%)
 Frame = +3

Query: 18  MSLFWKPGAEKPQLLDDEEGGVLFFXXXXXXX---YGYASLEKQRQRLPVFKYRNSILYL 188
           M+LFWKPG EKP LLDDEEGGV+F           YGY S+EKQRQRLPV+KYR +ILYL
Sbjct: 1   MALFWKPGTEKPPLLDDEEGGVVFLSSSVSSSSSGYGYVSIEKQRQRLPVYKYRTAILYL 60

Query: 189 VETHSTSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 368
           VETH+TS+IVGETGSGKTTQIPQYLKEAGWADGGR+IACTQPRRLAVQAVASRVAEEMGV
Sbjct: 61  VETHATSVIVGETGSGKTTQIPQYLKEAGWADGGRLIACTQPRRLAVQAVASRVAEEMGV 120

Query: 369 KLGDEVGYTIRFEDLTNSELTRVKFLTDGVLLREMMTDPLLSKYSVIMVDEAHERSIS 542
           KLG+EVGYTIRFEDLTNS++T++KFLTDGVLLREMM DPLL+KYSVIMVDEAHERSIS
Sbjct: 121 KLGEEVGYTIRFEDLTNSDVTKIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS 178


>ref|XP_004148780.1| PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Cucumis
           sativus] gi|449515633|ref|XP_004164853.1| PREDICTED:
           probable ATP-dependent RNA helicase DHX35-like [Cucumis
           sativus]
          Length = 696

 Score =  293 bits (749), Expect = 2e-77
 Identities = 147/178 (82%), Positives = 161/178 (90%), Gaps = 3/178 (1%)
 Frame = +3

Query: 18  MSLFWKPGAEKPQLLDDEEGGVLFFXXXXXXX---YGYASLEKQRQRLPVFKYRNSILYL 188
           M+ FWKPG EKP+LLDD EGGVLFF          +G++S EKQRQRLPV+KYR +ILYL
Sbjct: 1   MAQFWKPGTEKPRLLDDGEGGVLFFSSSYSSSSSGFGFSSTEKQRQRLPVYKYRTAILYL 60

Query: 189 VETHSTSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 368
           VETH+T+IIVGETGSGKTTQIPQ+LKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV
Sbjct: 61  VETHATTIIVGETGSGKTTQIPQFLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 120

Query: 369 KLGDEVGYTIRFEDLTNSELTRVKFLTDGVLLREMMTDPLLSKYSVIMVDEAHERSIS 542
           KLG+EVGYTIRFEDLTN ++TRVKFLTDGVLLREMM DPLL+KYSVIMVDEAHERSIS
Sbjct: 121 KLGEEVGYTIRFEDLTNPDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS 178


>ref|XP_002276679.2| PREDICTED: probable ATP-dependent RNA helicase DHX35 [Vitis
           vinifera]
          Length = 695

 Score =  291 bits (746), Expect = 3e-77
 Identities = 145/177 (81%), Positives = 162/177 (91%), Gaps = 2/177 (1%)
 Frame = +3

Query: 18  MSLFWKPGAEKPQLLDDEEGGVLFFXXXXXXX--YGYASLEKQRQRLPVFKYRNSILYLV 191
           MS FWKPG+EKP+LLDDEEGGVLF+         +GY+++EKQRQRLPV+KYR +ILYLV
Sbjct: 1   MSQFWKPGSEKPRLLDDEEGGVLFYSASASSSSGFGYSNIEKQRQRLPVYKYRTAILYLV 60

Query: 192 ETHSTSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 371
           ETH+T+IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
Sbjct: 61  ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 120

Query: 372 LGDEVGYTIRFEDLTNSELTRVKFLTDGVLLREMMTDPLLSKYSVIMVDEAHERSIS 542
           LG+EVGYTIRFEDL+ + +T VKFLTDGVLLREMM DPLL+KYSVIMVDEAHERS+S
Sbjct: 121 LGEEVGYTIRFEDLSKTGVTMVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSLS 177


>emb|CBI30650.3| unnamed protein product [Vitis vinifera]
          Length = 694

 Score =  291 bits (746), Expect = 3e-77
 Identities = 145/177 (81%), Positives = 162/177 (91%), Gaps = 2/177 (1%)
 Frame = +3

Query: 18  MSLFWKPGAEKPQLLDDEEGGVLFFXXXXXXX--YGYASLEKQRQRLPVFKYRNSILYLV 191
           MS FWKPG+EKP+LLDDEEGGVLF+         +GY+++EKQRQRLPV+KYR +ILYLV
Sbjct: 1   MSQFWKPGSEKPRLLDDEEGGVLFYSASASSSSGFGYSNIEKQRQRLPVYKYRTAILYLV 60

Query: 192 ETHSTSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 371
           ETH+T+IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
Sbjct: 61  ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 120

Query: 372 LGDEVGYTIRFEDLTNSELTRVKFLTDGVLLREMMTDPLLSKYSVIMVDEAHERSIS 542
           LG+EVGYTIRFEDL+ + +T VKFLTDGVLLREMM DPLL+KYSVIMVDEAHERS+S
Sbjct: 121 LGEEVGYTIRFEDLSKTGVTMVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSLS 177


>ref|XP_003593709.1| ATP-dependent RNA helicase dhx8 [Medicago truncatula]
           gi|355482757|gb|AES63960.1| ATP-dependent RNA helicase
           dhx8 [Medicago truncatula]
          Length = 701

 Score =  281 bits (720), Expect = 3e-74
 Identities = 142/183 (77%), Positives = 160/183 (87%), Gaps = 8/183 (4%)
 Frame = +3

Query: 18  MSLFWKPGAEKP--QLLDDEEGGVLF------FXXXXXXXYGYASLEKQRQRLPVFKYRN 173
           M+ FWKPG EKP  Q++DDEEGGVLF      F       YGYAS++KQRQRLPV+KYRN
Sbjct: 1   MAQFWKPGTEKPEAQVVDDEEGGVLFIPGASSFSSSSSSGYGYASIDKQRQRLPVYKYRN 60

Query: 174 SILYLVETHSTSIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 353
           +ILYLVETHST+IIVGETGSGKTTQIPQYL EAGWA GGR+IACTQPRRLAVQAV+SRVA
Sbjct: 61  AILYLVETHSTTIIVGETGSGKTTQIPQYLIEAGWASGGRLIACTQPRRLAVQAVSSRVA 120

Query: 354 EEMGVKLGDEVGYTIRFEDLTNSELTRVKFLTDGVLLREMMTDPLLSKYSVIMVDEAHER 533
           +EMGVKLGD+VGYTIRFED+TN + T +KF+TDGVLLREMM DPLL+KYSV+MVDEAHER
Sbjct: 121 QEMGVKLGDQVGYTIRFEDVTNQDETVLKFVTDGVLLREMMNDPLLTKYSVVMVDEAHER 180

Query: 534 SIS 542
           SIS
Sbjct: 181 SIS 183


Top