BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00044987
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271803.2| PREDICTED: uncharacterized protein LOC100243...   342   5e-92
emb|CBI30815.3| unnamed protein product [Vitis vinifera]              342   5e-92
ref|XP_004147431.1| PREDICTED: pre-mRNA-processing factor 39-lik...   317   2e-84
ref|XP_003629894.1| Pre-mRNA-processing factor [Medicago truncat...   298   1e-78
ref|NP_199452.2| pre-mRNA-processing factor 39 [Arabidopsis thal...   282   8e-74

>ref|XP_002271803.2| PREDICTED: uncharacterized protein LOC100243465 [Vitis vinifera]
          Length = 1179

 Score =  342 bits (878), Expect = 5e-92
 Identities = 164/296 (55%), Positives = 218/296 (73%), Gaps = 2/296 (0%)
 Frame = +2

Query: 5    SSMEVQAEVLPCG--AINMSETDIDDIIRNMQDSSNGSQWSNALQKYLAIGEQFYHKACQ 178
            S MEVQ+E++          + ++  I  ++ D S GS    ALQKYL+IGEQ Y KACQ
Sbjct: 236  SGMEVQSELVVDSENTTYYKDDEVSHITTDLLDPSVGSDRYKALQKYLSIGEQLYQKACQ 295

Query: 179  LEEKIHHFETSIGRPFFHMKPLDDNHLASWHSYLDFIEKQEDFDWIVKIYEKCLIPCANY 358
            ++ KIH FET I RP+FH+KPLD + L +WH YLDF+E Q DFDW VK+YE+CLIPCANY
Sbjct: 296  VDAKIHGFETHIRRPYFHVKPLDVSQLENWHQYLDFVEVQGDFDWAVKLYERCLIPCANY 355

Query: 359  PEFWMRYVEFMETKGGRELSNFALERATQIFLENAPVIHIFNARFKEQIGDVHGARAAFL 538
            PEFWMRYVEFME KGGRE++NFAL+R+T+IFL++ P IH+FNA FKEQ GDV GA AAF+
Sbjct: 356  PEFWMRYVEFMEIKGGREIANFALDRSTKIFLKSIPAIHVFNAWFKEQTGDVFGAHAAFV 415

Query: 539  QSDKDSNSYFVESAIKAANMEKRLGNLAGASSIYENALNLVSKRQKLHTVPVLYIHYSRL 718
            Q + +S+S F+E+ IK ANM+KRLGN A AS+I++ AL +  ++QK H +P LYIH+SRL
Sbjct: 416  QYETESDSSFIENVIKEANMKKRLGNFAAASNIFKEALAIAVEKQKFHILPNLYIHFSRL 475

Query: 719  KHLIAGSADNAIDVMLDGIEHVPHCRXXXXXXXXXXMMHEGSKYMTVVDSIIANAM 886
            +++I GS D A DV++DGI  VP  +          MMH G +++ VVD+++ANA+
Sbjct: 476  EYMITGSVDAARDVLIDGIRCVPESKMLLEELIKFAMMHGGPRHINVVDAVVANAI 531


>emb|CBI30815.3| unnamed protein product [Vitis vinifera]
          Length = 1195

 Score =  342 bits (878), Expect = 5e-92
 Identities = 164/296 (55%), Positives = 218/296 (73%), Gaps = 2/296 (0%)
 Frame = +2

Query: 5    SSMEVQAEVLPCG--AINMSETDIDDIIRNMQDSSNGSQWSNALQKYLAIGEQFYHKACQ 178
            S MEVQ+E++          + ++  I  ++ D S GS    ALQKYL+IGEQ Y KACQ
Sbjct: 191  SGMEVQSELVVDSENTTYYKDDEVSHITTDLLDPSVGSDRYKALQKYLSIGEQLYQKACQ 250

Query: 179  LEEKIHHFETSIGRPFFHMKPLDDNHLASWHSYLDFIEKQEDFDWIVKIYEKCLIPCANY 358
            ++ KIH FET I RP+FH+KPLD + L +WH YLDF+E Q DFDW VK+YE+CLIPCANY
Sbjct: 251  VDAKIHGFETHIRRPYFHVKPLDVSQLENWHQYLDFVEVQGDFDWAVKLYERCLIPCANY 310

Query: 359  PEFWMRYVEFMETKGGRELSNFALERATQIFLENAPVIHIFNARFKEQIGDVHGARAAFL 538
            PEFWMRYVEFME KGGRE++NFAL+R+T+IFL++ P IH+FNA FKEQ GDV GA AAF+
Sbjct: 311  PEFWMRYVEFMEIKGGREIANFALDRSTKIFLKSIPAIHVFNAWFKEQTGDVFGAHAAFV 370

Query: 539  QSDKDSNSYFVESAIKAANMEKRLGNLAGASSIYENALNLVSKRQKLHTVPVLYIHYSRL 718
            Q + +S+S F+E+ IK ANM+KRLGN A AS+I++ AL +  ++QK H +P LYIH+SRL
Sbjct: 371  QYETESDSSFIENVIKEANMKKRLGNFAAASNIFKEALAIAVEKQKFHILPNLYIHFSRL 430

Query: 719  KHLIAGSADNAIDVMLDGIEHVPHCRXXXXXXXXXXMMHEGSKYMTVVDSIIANAM 886
            +++I GS D A DV++DGI  VP  +          MMH G +++ VVD+++ANA+
Sbjct: 431  EYMITGSVDAARDVLIDGIRCVPESKMLLEELIKFAMMHGGPRHINVVDAVVANAI 486


>ref|XP_004147431.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus]
          Length = 901

 Score =  317 bits (813), Expect = 2e-84
 Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 9/303 (2%)
 Frame = +2

Query: 5    SSMEVQAEVLPCGAI--NMSETDIDDIIRNMQDSSNGSQWSNALQKYLAIGEQFYHKACQ 178
            +SM ++ E  P   +    ++T++  +I+++ D S G+   ++L KY+  GE+ Y +ACQ
Sbjct: 210  NSMPMEFEASPDSEVPTKCTDTELSSVIKDLLDLSAGTTRYSSLLKYVHAGEKLYDEACQ 269

Query: 179  LEEKIHHFETSIGRPFFHMKPLDDNHLASWHSYLDFIEKQEDFDWIVKIYEKCLIPCANY 358
            L+EKI HFE  I R +FH+KPLDD  L +WHSYLD +E   DFDW VK+YE+CLIPCA+Y
Sbjct: 270  LKEKIMHFEDKIRRTYFHVKPLDDGQLKNWHSYLDLVEMYGDFDWAVKLYERCLIPCASY 329

Query: 359  PEFWMRYVEFMETKGGRELSNFALERATQIFLENAPVIHIFNARFKEQIGDVHGARAAFL 538
            PEFWMRYVEF+ETKGGREL+ FALERAT+ FL+  PVIH+FN+RFKEQI D+ GARAAFL
Sbjct: 330  PEFWMRYVEFVETKGGRELAMFALERATKTFLKKVPVIHLFNSRFKEQIRDLSGARAAFL 389

Query: 539  QSDKDSNSYFVESAIKAANMEKRLGNLAGASSIYENALNLVSKRQKLHTVPVLYIHYSRL 718
            Q D D +S FVE+ I  ANMEKR+G    A +IY +AL +   ++KL  +P LY+H+SRL
Sbjct: 390  QLDGDLDSKFVENIILKANMEKRMGKSTEAFNIYRDALQMALMKKKLDVLPALYVHFSRL 449

Query: 719  KHL-------IAGSADNAIDVMLDGIEHVPHCRXXXXXXXXXXMMHEGSKYMTVVDSIIA 877
            KH+       I GS D A++V++DGI +VP C+          M+H   K + +VD I+A
Sbjct: 450  KHMVWNSCFQITGSVDAAMEVLIDGIRNVPLCKLLLEELINFVMVHGVPKLINLVDPIVA 509

Query: 878  NAM 886
            NA+
Sbjct: 510  NAI 512


>ref|XP_003629894.1| Pre-mRNA-processing factor [Medicago truncatula]
            gi|355523916|gb|AET04370.1| Pre-mRNA-processing factor
            [Medicago truncatula]
          Length = 1215

 Score =  298 bits (762), Expect = 1e-78
 Identities = 151/306 (49%), Positives = 207/306 (67%), Gaps = 11/306 (3%)
 Frame = +2

Query: 2    TSSMEVQAEVLPCGAINMSETDIDD----IIRNMQDSSNGSQWSNALQKYLAIGEQFYHK 169
            +S  E Q+E    G I M+    DD    +I++M DS  G   S AL+KY  IGEQ YH 
Sbjct: 214  SSPKESQSEPCLDGEIPMTMCRDDDEIYCVIKDMVDSPVGLTSSTALKKYRIIGEQLYHN 273

Query: 170  ACQLEEKIHHFETSIGRPFFHMKPLDDNHLASWHSYLDFIEKQEDFDWIVKIYEKCLIPC 349
            AC+L  KI  FE +I R +F  +PLD N L +WH+YLDFIE   DFDW VK+YE+CLI C
Sbjct: 274  ACELYSKISSFEANIQRYYFDFRPLDANQLQNWHAYLDFIELHGDFDWAVKLYERCLIVC 333

Query: 350  ANYPEFWMRYVEFMETKGGRELSNFALERATQIFLENAPVIHIFNARFKEQIGDVHGARA 529
            ANYP++WMRY +FME KGGRE++N++L+RAT+I+L++ P IH+FNARFKEQIGDV  ARA
Sbjct: 334  ANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFNARFKEQIGDVLAARA 393

Query: 530  AFLQSDKDSNSYFVESAIKAANMEKRLGNLAGASSIYENALNLVSKRQKLHTVPVLYIHY 709
            A++   K+++S FVE+ I  ANMEKRLGN+  A SIY+ AL + +  +K   +P+LY+H+
Sbjct: 394  AYIHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKEALEIAAAEEKQPALPILYVHF 453

Query: 710  SRLKHLIAG---SADNAID----VMLDGIEHVPHCRXXXXXXXXXXMMHEGSKYMTVVDS 868
            SRLK ++     S+ N +D    V++DGI  +P  +          MMH G+K++  +DS
Sbjct: 454  SRLKFMVGSLCLSSTNDVDAARVVLIDGIRTLPQNKLLLEELMKFSMMHGGAKHIDELDS 513

Query: 869  IIANAM 886
            IIA A+
Sbjct: 514  IIAGAI 519


>ref|NP_199452.2| pre-mRNA-processing factor 39 [Arabidopsis thaliana]
            gi|332007996|gb|AED95379.1| pre-mRNA-processing factor 39
            [Arabidopsis thaliana]
          Length = 1036

 Score =  282 bits (721), Expect = 8e-74
 Identities = 139/275 (50%), Positives = 186/275 (67%), Gaps = 2/275 (0%)
 Frame = +2

Query: 56   SETDIDDIIRNMQDSSNGSQWSNALQKYLAIGEQFYHKACQLEEKIHHFETSIGRPFFHM 235
            ++ +I  ++R +   S+ S  S AL  YL+IGEQFY  + QL EKI  FET I RP+FH+
Sbjct: 231  TDEEISIVVRELMGPSSSSAVSKALHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHV 290

Query: 236  KPLDDNHLASWHSYLDFIEKQEDFDWIVKIYEKCLIPCANYPEFWMRYVEFMETKGGREL 415
            KPLD N L +WH+YL F E   DFDW + +YE+CLIPCANY EFW RYV+F+E+KGGREL
Sbjct: 291  KPLDTNQLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGREL 350

Query: 416  SNFALERATQIFLENAPVIHIFNARFKEQIGDVHGARAAFLQSDKDSNSYFVESAIKAAN 595
            +NFAL RA+Q F+++A VIH+FNARFKE +GD   A  A  +  ++    FVE+  K AN
Sbjct: 351  ANFALARASQTFVKSASVIHLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKAN 410

Query: 596  MEKRLGNLAGASSIYENALN--LVSKRQKLHTVPVLYIHYSRLKHLIAGSADNAIDVMLD 769
            MEKRLGN   A + Y  ALN  L+ K + L T   LY+ +SRLK++I  SAD+A  ++L+
Sbjct: 411  MEKRLGNFEAAVTTYREALNKTLIGK-ENLETTARLYVQFSRLKYVITNSADDAAQILLE 469

Query: 770  GIEHVPHCRXXXXXXXXXXMMHEGSKYMTVVDSII 874
            G E+VPHC+          MMH GS+ + ++D II
Sbjct: 470  GNENVPHCKLLLEELMRLLMMHGGSRQVDLLDPII 504