BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00044676
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...   117   8e-25
dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]        117   8e-25
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   117   8e-25
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   117   1e-24
ref|XP_003545365.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   116   2e-24

>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
 Frame = -3

Query: 467 PNGLDVQKGSVLSKVPLLHMHCRELVLPNVAKFIELHKNTSETTQKSHDN-YTKPDLLRF 291
           P GLDVQKGSVLSKVPLLH+HCRE+VLPN+AKF  LH    + T+  H     KPDLLRF
Sbjct: 414 PEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKF--LHVMNQQETEPLHTGIIDKPDLLRF 471

Query: 290 VASMPSHMKISWNLMSSYLV 231
           VASMPSHMKISWNLMSSYLV
Sbjct: 472 VASMPSHMKISWNLMSSYLV 491


>dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
          Length = 326

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
 Frame = -3

Query: 467 PNGLDVQKGSVLSKVPLLHMHCRELVLPNVAKFIELHKNTSETTQKSHDN-YTKPDLLRF 291
           P GLDVQKGSVLSKVPLLH+HCRE+VLPN+AKF  LH    + T+  H     KPDLLRF
Sbjct: 249 PEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKF--LHVMNQQETEPLHTGIIDKPDLLRF 306

Query: 290 VASMPSHMKISWNLMSSYLV 231
           VASMPSHMKISWNLMSSYLV
Sbjct: 307 VASMPSHMKISWNLMSSYLV 326


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudourine synthase 3, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 3; AltName: Full=RNA-uridine
           isomerase 3; Flags: Precursor gi|53850479|gb|AAU95416.1|
           At1g78910 [Arabidopsis thaliana]
           gi|56790228|gb|AAW30031.1| At1g78910 [Arabidopsis
           thaliana] gi|332198052|gb|AEE36173.1| RNA pseudourine
           synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  117 bits (294), Expect = 8e-25
 Identities = 60/80 (75%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
 Frame = -3

Query: 467 PNGLDVQKGSVLSKVPLLHMHCRELVLPNVAKFIELHKNTSETTQKSHDN-YTKPDLLRF 291
           P GLDVQKGSVLSKVPLLH+HCRE+VLPN+AKF  LH    + T+  H     KPDLLRF
Sbjct: 401 PEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKF--LHVMNQQETEPLHTGIIDKPDLLRF 458

Query: 290 VASMPSHMKISWNLMSSYLV 231
           VASMPSHMKISWNLMSSYLV
Sbjct: 459 VASMPSHMKISWNLMSSYLV 478


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  117 bits (292), Expect = 1e-24
 Identities = 59/79 (74%), Positives = 64/79 (81%)
 Frame = -3

Query: 467 PNGLDVQKGSVLSKVPLLHMHCRELVLPNVAKFIELHKNTSETTQKSHDNYTKPDLLRFV 288
           P GLDVQKGSVLSKVPLLH+HCRE+VLPN+AKF+ +  N  ET         KPDLLRFV
Sbjct: 400 PEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHV-LNQQETEPLRTGIIDKPDLLRFV 458

Query: 287 ASMPSHMKISWNLMSSYLV 231
           ASMPSHMKISWNLMSSYLV
Sbjct: 459 ASMPSHMKISWNLMSSYLV 477


>ref|XP_003545365.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 3,
           mitochondrial-like [Glycine max]
          Length = 228

 Score =  116 bits (290), Expect = 2e-24
 Identities = 57/79 (72%), Positives = 67/79 (84%)
 Frame = -3

Query: 467 PNGLDVQKGSVLSKVPLLHMHCRELVLPNVAKFIELHKNTSETTQKSHDNYTKPDLLRFV 288
           P GLDVQKGSVLSKVPLLH+HCRELVLPN+AKF+ +  N+SE  + S     +PD+LRFV
Sbjct: 152 PEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNSSEELRTSLRE--QPDVLRFV 209

Query: 287 ASMPSHMKISWNLMSSYLV 231
           A+MPSHM+ISWNLMSSYLV
Sbjct: 210 ATMPSHMRISWNLMSSYLV 228