BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00044386
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   134   6e-30
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...   128   6e-28
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   125   3e-27
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   120   9e-26
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ...   119   3e-25

>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  134 bits (338), Expect = 6e-30
 Identities = 60/92 (65%), Positives = 74/92 (80%)
 Frame = -3

Query: 509  QRHSSYLLRDNRRYGETKDRIMVSIKNLHKEAKGWFDSSCLVHEKQNLASAWYYVTYHPT 330
            Q  + YL RDNRRYG+TKDRI++S+K+L KEAK WF+S C   EKQ LASAWY+VTYHP+
Sbjct: 876  QNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPS 935

Query: 329  HCQESIKCLGFPWIVGDILLDIKSVNSRELQS 234
            + QE I CL FPWIV DILL+IKS NS+ L++
Sbjct: 936  YFQEGITCLSFPWIVADILLNIKSANSKNLKT 967


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score =  128 bits (321), Expect = 6e-28
 Identities = 58/84 (69%), Positives = 70/84 (83%)
 Frame = -3

Query: 497  SYLLRDNRRYGETKDRIMVSIKNLHKEAKGWFDSSCLVHEKQNLASAWYYVTYHPTHCQE 318
            +YL RDNR+YG+ KDRI+VS+KNL KEAK WF+SSC   E Q +ASAWY+VTYHPT+  E
Sbjct: 1025 TYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHE 1084

Query: 317  SIKCLGFPWIVGDILLDIKSVNSR 246
             + CL FPWIVGDILL+IKS+NSR
Sbjct: 1085 RMNCLSFPWIVGDILLNIKSLNSR 1108


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  125 bits (315), Expect = 3e-27
 Identities = 57/92 (61%), Positives = 70/92 (76%)
 Frame = -3

Query: 509  QRHSSYLLRDNRRYGETKDRIMVSIKNLHKEAKGWFDSSCLVHEKQNLASAWYYVTYHPT 330
            ++ S YL RDNRRY E KDRI+VS K+L KE KGWF   C   E + LASAWY+VTYHP+
Sbjct: 1029 RQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPS 1088

Query: 329  HCQESIKCLGFPWIVGDILLDIKSVNSRELQS 234
            +C+ S  CLGFPW+VGDILLDIK  N+R++ S
Sbjct: 1089 YCEGSANCLGFPWVVGDILLDIKLHNTRKITS 1120


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/88 (64%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
 Frame = -3

Query: 509  QRHSSYLLRDNRRYGETKDRIMVSIKNLHKEAKGWFDSSCLVHEKQNLASAWYYVTYHPT 330
            Q  +SYL RDNRRYG+ KDRI++S+KNL +EAK WF++SC   E + +ASAWY+VTYH +
Sbjct: 1029 QNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTYHRS 1088

Query: 329  H-CQESIKCLGFPWIVGDILLDIKSVNS 249
            H CQES   L FPWIVGDILL I+SVNS
Sbjct: 1089 HYCQESPCFLSFPWIVGDILLQIRSVNS 1116


>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
            gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
            2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  119 bits (298), Expect = 3e-25
 Identities = 54/84 (64%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
 Frame = -3

Query: 494  YLLRDNRRYGETKDRIMVSIKNLHKEAKGWFDSSCL-VHEKQNLASAWYYVTYHPTHCQE 318
            YL RDNRRYG+ KDRI +S+K+LHKEA GWFD SC    +K+ LASAWYYVTY+P+H  E
Sbjct: 1037 YLARDNRRYGDMKDRITLSVKDLHKEAMGWFDKSCEDEQQKKKLASAWYYVTYNPSHRDE 1096

Query: 317  SIKCLGFPWIVGDILLDIKSVNSR 246
             +  L FPWIVGD+LLDIK+ N++
Sbjct: 1097 KLTFLSFPWIVGDVLLDIKAENAQ 1120