BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00044353
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      68   9e-10
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...    62   6e-08
gb|AAR96001.1| polyprotein-like protein [Musa acuminata]               61   8e-08
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    59   9e-08
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...    61   1e-07

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
 Frame = +2

Query: 2    CTRPDVA*CDKQISIFS*EKG------IR*Q*NVIVYLRSTRDIFVVSDGSK-LKLEILE 160
            CTRPDV+      S +  + G      ++   N++ YLR T+D+F+V  G + L +    
Sbjct: 1107 CTRPDVSYALSATSRYQSDPGEGHWTAVK---NILKYLRRTKDMFLVYGGEEDLVVSGYT 1163

Query: 161  DLSFG*SQFDSRSMSGHLIVLSGSAVSWNSFKQ*TTNDIRSGS--IVCFIASVMQYWIGK 334
            D SF   + D RS SG +  L+G AVSW S KQ T  D  + +  I    A+    WI K
Sbjct: 1164 DASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKK 1223

Query: 335  LVSELG*FLADDGPLSCIVTTQG 403
             VSELG   +  GP+S      G
Sbjct: 1224 FVSELGVMTSTTGPMSLYCDNSG 1246


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
 Frame = +2

Query: 2    CTRPDVA*CDKQISIFS*EKG------IR*Q*NVIVYLRSTRDIFVVSDGSK-LKLEILE 160
            CTRPDV       S +  + G      ++   N++ YLR T+D+F++  G + L +    
Sbjct: 731  CTRPDVPYALSATSQYQSDPGESHWIAVK---NILKYLRRTKDMFLIYGGQEELVVNNYT 787

Query: 161  DLSFG*SQFDSRSMSGHLIVLSGSAVSWNSFKQ*TTNDIRSGS--IVCFIASVMQYWIGK 334
            D SF   + D RS SG +  L+G AVSW S KQ T  D  + +  I    A+    WI K
Sbjct: 788  DASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAAWIKK 847

Query: 335  LVSELG*FLADDGPLSCIVTTQG 403
             VS+LG   +   P+       G
Sbjct: 848  FVSQLGVMTSASSPMDLYCDNSG 870


>gb|AAR96001.1| polyprotein-like protein [Musa acuminata]
          Length = 130

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
 Frame = +2

Query: 2   CTRPDVA*CDKQISIFS*EKGIR*Q*NV---IVYLRSTRDIFVVSDGSKLKLEILEDLSF 172
           CTRPD+A      S +  + GI     V   + YLR T+D+ +V  G+ LK+E   D SF
Sbjct: 19  CTRPDIAQALSVTSRYQADPGIEHWKAVKCILKYLRKTKDLLLVYGGNSLKVEGYMDSSF 78

Query: 173 G*SQFDSRSMSGHLIVLSGSAVSWNSFKQ*TTNDI 277
                DS+S SG++  L+G AV W S KQ TT D+
Sbjct: 79  QSDVDDSKSNSGYVYTLNGGAVCWKSSKQDTTADL 113


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score = 59.3 bits (142), Expect(2) = 9e-08
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
 Frame = +2

Query: 2    CTRPDVA*CDKQISIFS*EKG------IR*Q*NVIVYLRSTRDIFVVSDGSK-LKLEILE 160
            CTRPDV+      S +  + G      ++   N++ YLR T+D+F+   G + L +    
Sbjct: 978  CTRPDVSYALSATSRYQSDPGESHWIAVK---NILKYLRRTKDMFLAYGGQEELVVNGYT 1034

Query: 161  DLSFG*SQFDSRSMSGHLIVLSGSAVSWNSFKQ*TTNDIRSGSIVCFIASVMQYWIGKLV 340
            D SF   + D RS SG +  L+G AVSW S KQ    D  S +   +IA+    WI K V
Sbjct: 1035 DASFQIDKDDFRSQSGFVFCLNGGAVSWKSSKQDIVVD--STTEAEYIAASEAVWIKKFV 1092

Query: 341  SELG 352
            S+LG
Sbjct: 1093 SQLG 1096



 Score = 21.6 bits (44), Expect(2) = 9e-08
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 343  RVGLVPSR*WAIELYCDNTRA 405
            ++G++ S   +++LYCDN+ A
Sbjct: 1094 QLGVMTSASSSMDLYCDNSGA 1114


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
 Frame = +2

Query: 5    TRPDVA*CDKQISIFS*EKG------IR*Q*NVIVYLRSTRDIFVVSDGSK-LKLEILED 163
            TRPDVA      S +  + G      +R   N+  YLR T+D F+V  GS+ L +    D
Sbjct: 755  TRPDVACALSMTSRYQSDPGESHWIVVR---NIFKYLRRTKDKFLVYGGSEELVVSGYTD 811

Query: 164  LSFG*SQFDSRSMSGHLIVLSGSAVSWNSFKQ*TTNDIRSGS--IVCFIASVMQYWIGKL 337
             SF   + D RS SG    L+G AVSW S KQ T  D  + +  I    A+    WI K 
Sbjct: 812  ASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKF 871

Query: 338  VSELG*FLADDGPLSCIVTTQG 403
            ++ELG   +  GP+       G
Sbjct: 872  ITELGVVPSISGPIDLYCDNNG 893