BLASTX nr result
ID: Cnidium21_contig00044304
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00044304
(276 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI26175.3| unnamed protein product [Vitis vinifera] 135 4e-30
ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containi... 135 4e-30
ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containi... 124 8e-27
ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|2... 122 3e-26
ref|XP_002516788.1| pentatricopeptide repeat-containing protein,... 115 4e-24
>emb|CBI26175.3| unnamed protein product [Vitis vinifera]
Length = 619
Score = 135 bits (339), Expect = 4e-30
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
ARDLF+RIP KDVVSWGT+IDGYVQ+ RL +AL MYR ML +G+ PNEVM VDLISAC +
Sbjct: 239 ARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGR 298
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIHF 276
MA G+QFHG+ ++ GFD YDF+QAT+IHF
Sbjct: 299 TMAVSEGQQFHGIIVRTGFDCYDFIQATIIHF 330
Score = 57.8 bits (138), Expect = 9e-07
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR LF+++P K VS+ TM+ G Q +A+ ++++M +G+IPNEV +ISA
Sbjct: 137 ARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSH 196
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIH 273
R H +S KLG + + + ++H
Sbjct: 197 VGGILNCRMLHALSFKLGLEALNIVATNLVH 227
>ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 135 bits (339), Expect = 4e-30
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
ARDLF+RIP KDVVSWGT+IDGYVQ+ RL +AL MYR ML +G+ PNEVM VDLISAC +
Sbjct: 269 ARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGR 328
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIHF 276
MA G+QFHG+ ++ GFD YDF+QAT+IHF
Sbjct: 329 TMAVSEGQQFHGIIVRTGFDCYDFIQATIIHF 360
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/90 (35%), Positives = 47/90 (52%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR LFD +P++DV SW +MI GY Q + AL ++ EM++ G+ PNE+ V + SA
Sbjct: 401 ARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIAT 460
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVI 270
GR H + D + A +I
Sbjct: 461 LGTLMEGRWAHEYILSNSIPLNDNLNAALI 490
Score = 57.8 bits (138), Expect = 9e-07
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR LF+++P K VS+ TM+ G Q +A+ ++++M +G+IPNEV +ISA
Sbjct: 137 ARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSH 196
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIH 273
R H +S KLG + + + ++H
Sbjct: 197 VGGILNCRMLHALSFKLGLEALNIVATNLVH 227
>ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 124 bits (311), Expect = 8e-27
Identities = 55/92 (59%), Positives = 73/92 (79%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR+LF+R+PDKDV+SWGTMIDGY+ + RL +AL+MYR ML SGL NE++ V+L+SAC +
Sbjct: 486 ARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGR 545
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIHF 276
A G G Q HG+ +K GFD Y+F+Q T+IHF
Sbjct: 546 LNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHF 577
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR +FD +P++DV SW TMI GY Q + AL ++ +M++SG+ PNEV V + SA
Sbjct: 618 ARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIAT 677
Query: 181 AMAFGTGRQFH 213
GR H
Sbjct: 678 LGTLKEGRWAH 688
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR LFD +PDK VS+ TMI G VQ +AL ++++M S G++PN++ V++I AC
Sbjct: 354 ARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSH 413
Query: 181 AMAFGTGRQFHGVSIKL 231
R H ++IKL
Sbjct: 414 FGEILNCRMIHAIAIKL 430
>ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|222863460|gb|EEF00591.1|
predicted protein [Populus trichocarpa]
Length = 571
Score = 122 bits (306), Expect = 3e-26
Identities = 58/92 (63%), Positives = 75/92 (81%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
A+++F+ IPDKD+VSWGT+IDGYV+V RL +AL+MYR M+S+GL P+EV +DLISAC +
Sbjct: 146 AKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMMYRLMVSTGLGPSEVTMIDLISACGR 205
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIHF 276
AMA G+Q H V +K FD YDF+QATVIHF
Sbjct: 206 AMAIVEGQQLHCVVVKTSFDCYDFVQATVIHF 237
Score = 66.2 bits (160), Expect = 3e-09
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR LF+ +P K VS+ TMI G+V+ +A+ +Y+EM S G++PNEV +ISAC +
Sbjct: 14 ARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPNEVTMASVISACCR 73
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIH 273
R HG+ IK+ FD + + +++
Sbjct: 74 VGRIWDCRMLHGLVIKMMFDGFVLVSTNLLN 104
Score = 60.8 bits (146), Expect = 1e-07
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR+LF+ +P++DV SW TMI GY Q + AL ++ M++SG+ PNEV V + SA
Sbjct: 278 ARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAA 337
Query: 181 AMAFGTGRQFH 213
GR H
Sbjct: 338 LGTLKEGRWAH 348
>ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543876|gb|EEF45402.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 710
Score = 115 bits (288), Expect = 4e-24
Identities = 52/91 (57%), Positives = 73/91 (80%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
AR +F+RIP+KD+V+WGT+IDGYV+V R+++AL+MYR M+S+G PN+VM VDLIS C +
Sbjct: 283 ARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGR 342
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVIH 273
MA G+Q +K+GFD YDF+Q+T+IH
Sbjct: 343 TMAMTEGQQLLSAVVKMGFDCYDFIQSTIIH 373
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
A +LF+ +P++DV SW TMI GY Q + + AL ++ +M++SG+ PNEV V ++SA
Sbjct: 415 AMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIAT 474
Query: 181 AMAFGTGRQFH 213
+ GR H
Sbjct: 475 SGTLKEGRWAH 485
Score = 54.7 bits (130), Expect = 8e-06
Identities = 29/90 (32%), Positives = 50/90 (55%)
Frame = +1
Query: 1 ARDLFDRIPDKDVVSWGTMIDGYVQVGRLSDALIMYREMLSSGLIPNEVMAVDLISACRQ 180
A +LFD +P K VS+ TMI G+ Q + A+ ++++M + G++PNEV L+SA
Sbjct: 151 ACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSH 210
Query: 181 AMAFGTGRQFHGVSIKLGFDNYDFMQATVI 270
R HG+ IK+ F+ + + ++
Sbjct: 211 FGGIWACRMLHGLVIKMLFEEFVLVSTNLL 240