BLASTX nr result

ID: Cnidium21_contig00043854 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00043854
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF82236.1|AC069143_12 Contains similarity to a transposable ...   186   1e-45
ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerizat...   186   1e-45
ref|NP_189620.1| General transcription factor 2-related zinc fin...   186   2e-45
ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] ...   173   1e-41
gb|EEC70057.1| hypothetical protein OsI_00657 [Oryza sativa Indi...   172   3e-41

>gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for
           transposase from Ipomoea purpurea gb|4063769 and is a
           member of the transmembrane 4 family PF|00335
           [Arabidopsis thaliana]
          Length = 811

 Score =  186 bits (473), Expect = 1e-45
 Identities = 92/137 (67%), Positives = 115/137 (83%)
 Frame = -3

Query: 416 SIDVSRYLLNSALPFRGHDESENSFHRGHFLELMKYTQNQNESVRKVTLKNAPGNSQMVS 237
           SIDVSR+LL+  LPFRGHDESE S ++G+F+EL+KYT  QNE V+KV LKNAP N+QM S
Sbjct: 219 SIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTS 278

Query: 236 PKIQKDICHCFAQEILKSIISEIGDDVFALLVDESSDVSKKEQMAVVLRYVDDTCGLVKE 57
           P IQKDI HCF++E+ +SII E+ +DVF LLVDES+D S KEQMAVV R+V D  G+VKE
Sbjct: 279 PPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFV-DKYGVVKE 337

Query: 56  RFVGLVHVKETSSLTLK 6
           RF+G++HV+ETSSL+LK
Sbjct: 338 RFIGVIHVQETSSLSLK 354


>ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain
           [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1|
           TTF-type zinc finger protein with HAT dimerization
           domain [Arabidopsis thaliana]
          Length = 769

 Score =  186 bits (473), Expect = 1e-45
 Identities = 92/137 (67%), Positives = 115/137 (83%)
 Frame = -3

Query: 416 SIDVSRYLLNSALPFRGHDESENSFHRGHFLELMKYTQNQNESVRKVTLKNAPGNSQMVS 237
           SIDVSR+LL+  LPFRGHDESE S ++G+F+EL+KYT  QNE V+KV LKNAP N+QM S
Sbjct: 177 SIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTS 236

Query: 236 PKIQKDICHCFAQEILKSIISEIGDDVFALLVDESSDVSKKEQMAVVLRYVDDTCGLVKE 57
           P IQKDI HCF++E+ +SII E+ +DVF LLVDES+D S KEQMAVV R+V D  G+VKE
Sbjct: 237 PPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFV-DKYGVVKE 295

Query: 56  RFVGLVHVKETSSLTLK 6
           RF+G++HV+ETSSL+LK
Sbjct: 296 RFIGVIHVQETSSLSLK 312


>ref|NP_189620.1| General transcription factor 2-related zinc finger protein
           [Arabidopsis thaliana] gi|332644085|gb|AEE77606.1|
           General transcription factor 2-related zinc finger
           protein [Arabidopsis thaliana]
          Length = 505

 Score =  186 bits (471), Expect = 2e-45
 Identities = 92/137 (67%), Positives = 114/137 (83%)
 Frame = -3

Query: 416 SIDVSRYLLNSALPFRGHDESENSFHRGHFLELMKYTQNQNESVRKVTLKNAPGNSQMVS 237
           SIDVSR+LL+  LPFRGHDESE S ++G+FLEL+KY   QNE V+KV LKNAP N+QM S
Sbjct: 45  SIDVSRHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTS 104

Query: 236 PKIQKDICHCFAQEILKSIISEIGDDVFALLVDESSDVSKKEQMAVVLRYVDDTCGLVKE 57
           P IQKDI HCF++E+ +SII E+ +DVF LLVDES+D S KEQMAVV R+V D  G+VKE
Sbjct: 105 PPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFV-DKYGVVKE 163

Query: 56  RFVGLVHVKETSSLTLK 6
           RF+G++HV+ETSSL+LK
Sbjct: 164 RFIGVIHVQETSSLSLK 180


>ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana]
           gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis
           thaliana] gi|7267661|emb|CAB78089.1| putative protein
           [Arabidopsis thaliana] gi|332657378|gb|AEE82778.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 664

 Score =  173 bits (438), Expect = 1e-41
 Identities = 85/130 (65%), Positives = 105/130 (80%)
 Frame = -3

Query: 395 LLNSALPFRGHDESENSFHRGHFLELMKYTQNQNESVRKVTLKNAPGNSQMVSPKIQKDI 216
           L+   L FRGHDESE S ++G+FLEL+KYT  QNE V+KV LKNAP N+QM SP IQKDI
Sbjct: 148 LMRQGLSFRGHDESEESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDI 207

Query: 215 CHCFAQEILKSIISEIGDDVFALLVDESSDVSKKEQMAVVLRYVDDTCGLVKERFVGLVH 36
            HCF++E+ +SII E+ +DVF LLVDES+D S KEQM VV R+V D  G+VKERF+G++H
Sbjct: 208 VHCFSEEVTRSIIEEMDNDVFGLLVDESADASNKEQMTVVFRFV-DKYGVVKERFIGVIH 266

Query: 35  VKETSSLTLK 6
           VKETSSL+LK
Sbjct: 267 VKETSSLSLK 276


>gb|EEC70057.1| hypothetical protein OsI_00657 [Oryza sativa Indica Group]
          Length = 836

 Score =  172 bits (435), Expect = 3e-41
 Identities = 89/137 (64%), Positives = 104/137 (75%)
 Frame = -3

Query: 416 SIDVSRYLLNSALPFRGHDESENSFHRGHFLELMKYTQNQNESVRKVTLKNAPGNSQMVS 237
           SIDV+R LL   +PFRGHDESE S ++G+F E   YT  QN ++ KV  KNAPGNSQ  S
Sbjct: 190 SIDVTRILLKLGMPFRGHDESEESLNKGNFKEFHAYTAEQNPALHKVAGKNAPGNSQYTS 249

Query: 236 PKIQKDICHCFAQEILKSIISEIGDDVFALLVDESSDVSKKEQMAVVLRYVDDTCGLVKE 57
            KIQ DI  CFA+E+L+ I+ E+G+DVF LLVDES DVS KEQMAVVLRYV   CG VKE
Sbjct: 250 SKIQNDIIRCFAKEVLRYILEEVGNDVFCLLVDESRDVSYKEQMAVVLRYV-GKCGSVKE 308

Query: 56  RFVGLVHVKETSSLTLK 6
           R VGLVHVKET+S+ LK
Sbjct: 309 RLVGLVHVKETTSMYLK 325


Top