BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00043786
         (736 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   317   1e-84
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   312   4e-83
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   311   7e-83
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   298   8e-79
ref|XP_002894642.1| pseudouridine synthase family protein [Arabi...   295   7e-78

>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score =  317 bits (813), Expect = 1e-84
 Identities = 164/247 (66%), Positives = 188/247 (76%), Gaps = 2/247 (0%)
 Frame = +2

Query: 2   SPPLPLISKDIELSRAMTASSKSSLFCLSRTHVLFEDDWLIAVCKPQGVYCEAVLASVPS 181
           SPPLP ISK IEL+RA++ASS+SSLF LSR+ VL+ED WLIAV KPQGVYCE VL SVP 
Sbjct: 27  SPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVNKPQGVYCETVLESVPR 86

Query: 182 LLTHS--LDSGQLDTQIKPPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVKKT 355
           +L  S  L       +  P EFHLANRLDRDTSGVM+ITKSHKVA+KLVKAFTDHK+KKT
Sbjct: 87  VLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKIKKT 146

Query: 356 YIASCTGAAPNWQRISIESGHGRSKFGAWRVYATSDVGKKLPGGSVVRDMATIFEVLSVN 535
           YIA C G AP W++I+I+SGHGRSKFG WRVYA SDVG+ LPGGS V+DM T FE+LSVN
Sbjct: 147 YIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDVGQTLPGGSTVKDMETSFELLSVN 206

Query: 536 GQYCTKDXXXXXXXXXXXXXXXXXXTDFGGRKDEIVVRAYPRSGRTHQIRLHCQYLGISI 715
           GQ   K+                   +   +K EI+VRA+P+SGRTHQIRLHCQYLGISI
Sbjct: 207 GQGSFKELSEFEKDENILVVEEKAAKNADVKKVEILVRAFPQSGRTHQIRLHCQYLGISI 266

Query: 716 RGDVKYE 736
           RGDVKYE
Sbjct: 267 RGDVKYE 273


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  312 bits (800), Expect = 4e-83
 Identities = 159/246 (64%), Positives = 188/246 (76%), Gaps = 1/246 (0%)
 Frame = +2

Query: 2   SPPLPLISKDIELSRAMTASSKSSLFCLSRTHVLFEDDWLIAVCKPQGVYCEAVLASVPS 181
           SPPLP ISK++EL+RAM ASSKSSL+ LS   V++ED+WLIAV KPQG+YCE VLA+VP 
Sbjct: 62  SPPLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPR 121

Query: 182 LLTHSLDSGQLDTQIKPPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVKKTYI 361
           LL  S ++G + T +  PE HLANRLDRDTSGVM+ITKSHKVA+KLVKAFTDH V K+YI
Sbjct: 122 LLGDSANAG-IKTSL--PELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYI 178

Query: 362 ASCTGAAPNWQRISIESGHGRSKFGAWRVYATSDVGKKLPGGSVVRDMATIFEVLSVNGQ 541
           A C G +P W++I+++SGHGRSKFG WRVYA +DVG+ LPGGSVVRDM T FEVLSVNG+
Sbjct: 179 AFCVGTSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGK 238

Query: 542 YCTKD-XXXXXXXXXXXXXXXXXXTDFGGRKDEIVVRAYPRSGRTHQIRLHCQYLGISIR 718
              ++                    D    KDEI++RA PRSGRTHQIRLHCQYLGI IR
Sbjct: 239 NTMEELQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIR 298

Query: 719 GDVKYE 736
           GDVKYE
Sbjct: 299 GDVKYE 304


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
           [Cucumis sativus]
          Length = 366

 Score =  311 bits (798), Expect = 7e-83
 Identities = 159/246 (64%), Positives = 187/246 (76%), Gaps = 1/246 (0%)
 Frame = +2

Query: 2   SPPLPLISKDIELSRAMTASSKSSLFCLSRTHVLFEDDWLIAVCKPQGVYCEAVLASVPS 181
           SPPLP ISK++EL+RAM ASSKSSL+ LS   V++ED+WLIAV KPQG+YCE VLA+VP 
Sbjct: 62  SPPLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPR 121

Query: 182 LLTHSLDSGQLDTQIKPPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVKKTYI 361
           LL  S ++G + T +  PE HLANRLDRDTSGVM+ITKSHKVA+KLVKAFTDH V K+YI
Sbjct: 122 LLGDSANAG-IKTSL--PELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYI 178

Query: 362 ASCTGAAPNWQRISIESGHGRSKFGAWRVYATSDVGKKLPGGSVVRDMATIFEVLSVNGQ 541
           A C G +P W +I+++SGHGRSKFG WRVYA +DVG+ LPGGSVVRDM T FEVLSVNG+
Sbjct: 179 AFCVGTSPKWXKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGK 238

Query: 542 YCTKD-XXXXXXXXXXXXXXXXXXTDFGGRKDEIVVRAYPRSGRTHQIRLHCQYLGISIR 718
              ++                    D    KDEI++RA PRSGRTHQIRLHCQYLGI IR
Sbjct: 239 NTMEELQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIR 298

Query: 719 GDVKYE 736
           GDVKYE
Sbjct: 299 GDVKYE 304


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  298 bits (763), Expect = 8e-79
 Identities = 156/246 (63%), Positives = 179/246 (72%), Gaps = 1/246 (0%)
 Frame = +2

Query: 2   SPPLPLISKDIELSRAMTASSKSSLFCLSRTHVLFEDDWLIAVCKPQGVYCEAVLASVPS 181
           SPPLP ISK IE SRAM+ASS+SSLF L R+ +LFED WL+AV KPQGVYCE +L SV  
Sbjct: 59  SPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCETILLSVSR 118

Query: 182 LLTHSLDSGQLDTQIKPPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVKKTYI 361
           +L  S      D        HLANRLDRDTSGVM+ITKSH+VAAKL+KAF+D KV KTY+
Sbjct: 119 MLDDS------DGHDSCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKAFSDRKVTKTYL 172

Query: 362 ASCTGAAPNWQRISIESGHGRSKFGAWRVYATSDVGKKLPGGSVVRDMATIFEVLSVNGQ 541
           A C GAAP W++I+I+SGHGRSKFGAWRVYA SDVG+ LP    ++DM T FEVLSVNGQ
Sbjct: 173 ALCIGAAPTWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMVTSFEVLSVNGQ 232

Query: 542 YCTKDXXXXXXXXXXXXXXXXXXT-DFGGRKDEIVVRAYPRSGRTHQIRLHCQYLGISIR 718
              K+                    D   R+DEI+VRA+PRSGRTHQIRLHCQYLGISIR
Sbjct: 233 GNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGISIR 292

Query: 719 GDVKYE 736
           GDVKYE
Sbjct: 293 GDVKYE 298


>ref|XP_002894642.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297340484|gb|EFH70901.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 321

 Score =  295 bits (755), Expect = 7e-78
 Identities = 158/244 (64%), Positives = 182/244 (74%)
 Frame = +2

Query: 2   SPPLPLISKDIELSRAMTASSKSSLFCLSRTHVLFEDDWLIAVCKPQGVYCEAVLASVPS 181
           SPP P ISKDIEL RAM ASSKSSLF L+R HVL+ED++L+AV KP+GVYCEAVL S P 
Sbjct: 45  SPPPPPISKDIELRRAMEASSKSSLFNLTRDHVLYEDEYLMAVNKPKGVYCEAVLRSAPQ 104

Query: 182 LLTHSLDSGQLDTQIKPPEFHLANRLDRDTSGVMLITKSHKVAAKLVKAFTDHKVKKTYI 361
           ++   LDS          EFHLANRLDRDTSGVM+ITKSHKVAAKLVKAFT+HK++K+YI
Sbjct: 105 IV---LDSSS--------EFHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYI 153

Query: 362 ASCTGAAPNWQRISIESGHGRSKFGAWRVYATSDVGKKLPGGSVVRDMATIFEVLSVNGQ 541
           A C G++PNW++I++ SGHGRSK GAWRVYA  DVG+ LPGGS VRDM T FEV+SVNG 
Sbjct: 154 ALCIGSSPNWRKITVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNGV 213

Query: 542 YCTKDXXXXXXXXXXXXXXXXXXTDFGGRKDEIVVRAYPRSGRTHQIRLHCQYLGISIRG 721
             T+                    D     D +VVRA+PRSGRTHQIRLHCQYLGISIRG
Sbjct: 214 E-TESCEVENVIVVEREQELSCAGD-----DVVVVRAFPRSGRTHQIRLHCQYLGISIRG 267

Query: 722 DVKY 733
           DVKY
Sbjct: 268 DVKY 271