BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00043784
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...    55   6e-06

>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
 Frame = +2

Query: 44  TITLTRDTVNEIKLPPQIHVAPHTVVWNNPLVGANASENYVIDIASLKYKNTKNFDNFDV 223
           T  ++ D VN +K+P   H  P+ + W N        +  +I I+  KY++    D   +
Sbjct: 426 TNVISEDVVNAMKIPTIQHPQPYKLQWLNDDGELKVHKQALISISIGKYQDDVLCDVIPM 485

Query: 224 IACQLVLGTPYQFDLNLCH--KSREKTIDNDG-KYVLYPLEDKIVLN 355
            AC ++LG P+Q+D +  H  K+ + TI   G KY L PL  K V N
Sbjct: 486 HACHILLGRPWQYDRDTLHHGKTNKYTIHKGGKKYTLTPLAPKEVYN 532