BLASTX nr result

ID: Cnidium21_contig00043514 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00043514
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13167.1| putative retrovirus-like polyprotein [Phaseolus v...    71   8e-11
gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]       63   3e-08
emb|CAN61743.1| hypothetical protein VITISV_038639 [Vitis vinifera]    62   5e-08
ref|XP_004141415.1| PREDICTED: uncharacterized protein LOC101212...    60   1e-07
emb|CAN59936.1| hypothetical protein VITISV_001878 [Vitis vinifera]    60   2e-07

>gb|AER13167.1| putative retrovirus-like polyprotein [Phaseolus vulgaris]
          Length = 1009

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
 Frame = +2

Query: 92  GSKYYCTHFKINGHSIERCFKVNGYHPGFKNNRDRKVAAVSCGTTNDVI-------HQDQ 250
           G+K  CTH   NGH+IE C+K +GY PG+K     K   V+    +D +        Q++
Sbjct: 497 GNKKMCTHCGRNGHTIETCYKKHGYPPGYK-FYGSKTNQVNNIVISDYVLSEPCQKEQEK 555

Query: 251 NQSISVAQYNQLMALLSNQHISNPVTP*VKEGNDHAMLAGKFCFMTDHK----------- 397
            +    AQ  Q+++ L  Q  +N         N      G F   T+HK           
Sbjct: 556 GEYHLTAQQYQVLSDLFRQSTNNNTA-----ANIQVNRVGSFTADTNHKMAKRSPTGNIL 610

Query: 398 --NNFS-----WLIDSGATDHICSDLSYFIHYTKVQP 487
             NN       W++DSGATDH+CS LS F  Y  ++P
Sbjct: 611 TLNNLQHGRNYWILDSGATDHVCSSLSEFTSYKSIKP 647


>gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]
          Length = 1157

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
 Frame = +2

Query: 71  SSVGPKKGSKYYCTHFKINGHSIERCFKVNGYHPGFKNNRDRKVAAVSCGT-------TN 229
           SS    KG   +CT      H+IE C+   G HP F         AVS  +       TN
Sbjct: 258 SSTSANKGKDRFCTFCNRYNHTIEFCYLKYG-HPNFNKGNSSANNAVSEASDTNNSIGTN 316

Query: 230 DVIHQDQNQSISVAQYNQLMALLSNQHISNPVTP*VKEGNDHAMLAGKFCFMTDHKNNFS 409
           DV+  D   S++  +Y+ L+ALL   ++ + V+P     ++H   +         +   S
Sbjct: 317 DVVAPDSKFSLTQEKYDHLVALLQQANLLSSVSPPTGPISNHVHTSTISSVPDTQQTGIS 376

Query: 410 -------------WLIDSGATDHICSDLSYFIHYTKVQP 487
                        W++DSGA +HICS    F  + K++P
Sbjct: 377 SVVSCAIDSASHHWILDSGANNHICSSSLCFTSFYKIKP 415


>emb|CAN61743.1| hypothetical protein VITISV_038639 [Vitis vinifera]
          Length = 481

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
 Frame = +2

Query: 5   ATYNNFQKHAGGVGNSGYHTCKSSVGPKKGSKYYCTHFKINGHSIERCFKVNGYHPGFKN 184
           ATYN          N   +  +S     K S  +CTH   NGH++++CF+++GY PG+  
Sbjct: 185 ATYNETHALMAKQSNQXRYQPQSFKDKPKKSXLHCTHCGYNGHTMDKCFQLHGYPPGWNG 244

Query: 185 NRDRK--VAAVSCGTTNDVIHQD----QNQSISVAQYNQLMALLS----NQHISNPVTP* 334
            + ++   +A +  TT +V +Q+    Q    +  ++++L+ L +    N    N V P 
Sbjct: 245 PKGKRXMASAHAAITTPEVPNQNXXEQQKFCFTPEEFHKLVXLANSVQPNSSNQNNVQPA 304

Query: 335 VK-------EGNDHAMLAGKF-CFMTDHKNNFS--WLIDSGATDH-ICSDLSY 460
           V         G     L   F C     K N +  WL+D+GATDH ICS L Y
Sbjct: 305 VNLVTTSHFSGKVQPTLKPIFSCNSVTSKPNSTSYWLLDTGATDHMICSPLLY 357


>ref|XP_004141415.1| PREDICTED: uncharacterized protein LOC101212632 [Cucumis sativus]
           gi|449449869|ref|XP_004142687.1| PREDICTED:
           uncharacterized protein LOC101213831 [Cucumis sativus]
          Length = 440

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
 Frame = +2

Query: 71  SSVGPKKGSKYYCTHFKINGHSIERCFKVNGYHPGFK----NN--RDRKVAAVSCGTTND 232
           S    KK ++  C++    GH+ ++C+K++GY PG +    NN    R+   +  G    
Sbjct: 199 SDKSKKKDTRPICSNCGYKGHTADKCYKLHGYPPGHRLANSNNSVHQRQDNTIQDGNDKV 258

Query: 233 VIHQDQNQSISVA-----QYNQLMALLSNQHISNPVTP*VKEGNDHAMLAGKFCFMTDHK 397
           +    +NQS   A     QY QL+ +L   H++ P        N+   +AG  C      
Sbjct: 259 IEVSKRNQSAFFASLNSDQYTQLLDMLQT-HLNTPQNG-ENFKNETTHIAGT-CLSNSLN 315

Query: 398 NNFSWLIDSGATDHICSDLSYFIHYTKVQ 484
           +  +W+IDSGA+ HIC D   F +    Q
Sbjct: 316 DPLTWIIDSGASSHICHDKFMFTNLYSAQ 344


>emb|CAN59936.1| hypothetical protein VITISV_001878 [Vitis vinifera]
          Length = 1031

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
 Frame = +2

Query: 107 CTHFKINGHSIERCFKVNGYHPGFKN--------NRDRKVAAVSCGTTNDVIHQDQNQSI 262
           CTH  I GH++++C+K++GY PGF+N        +   ++   S  T    +      S 
Sbjct: 255 CTHCNILGHTVDQCYKIHGYPPGFRNRPNFRPNGSHPNQMLPNSLHTNQLTLTDGSTASA 314

Query: 263 SVA-----QYNQLMALLSNQHISNPVTP*VKEGNDHAMLAGKFCFM------TDHKNNFS 409
           S       Q+NQL+ALLS  H S+  +    + N        F  +      +   N   
Sbjct: 315 SPLPLTHDQHNQLLALLS-LHSSSGSSTSFGDSNPLQQSISNFTGILSLSPSSSTLNPSI 373

Query: 410 WLIDSGATDHICSDLSYF 463
           W++DSGAT H+C++ S F
Sbjct: 374 WILDSGATHHVCTNSSMF 391


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