BLASTX nr result
ID: Cnidium21_contig00043412
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00043412
(376 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 172 3e-41
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 169 2e-40
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 167 6e-40
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 167 8e-40
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ... 158 4e-37
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 172 bits (435), Expect = 3e-41
Identities = 81/125 (64%), Positives = 100/125 (80%)
Frame = +1
Query: 1 DEEIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVE 180
D E+VE+VLK+C +VP LA RFFNWVK +NG HTT TYNTM+ IAGE +EFGLVEKL+
Sbjct: 170 DSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVEKLIG 229
Query: 181 EMGKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALCNAG 360
EM + + DI+TWTILI+HYGKAK++GKALL+ EKM SG EPD+ AY ++ R+LCNA
Sbjct: 230 EMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQ 289
Query: 361 KDDIA 375
K DIA
Sbjct: 290 KADIA 294
Score = 79.3 bits (194), Expect = 3e-13
Identities = 39/115 (33%), Positives = 65/115 (56%)
Frame = +1
Query: 7 EIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVEEM 186
++V +L+ CS A FF+WV ++G++HTTETYN + I+G + F + L EM
Sbjct: 664 QLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLFFEM 723
Query: 187 GKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALC 351
+ + + TWTI+I YG+A + AL + +M+ + +P+ YK + LC
Sbjct: 724 RRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLIICLC 778
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 169 bits (428), Expect = 2e-40
Identities = 78/125 (62%), Positives = 103/125 (82%)
Frame = +1
Query: 1 DEEIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVE 180
+ EIVE+VLK+C +VP LAFRFF+WVK+++GF HTT+TY TM+ IAGE +EF +V+ LVE
Sbjct: 175 EPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVE 234
Query: 181 EMGKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALCNAG 360
EM KNS E DI+TW+ILI+ +GKAK++GKALL +EKM+ SG EPD YK+M +LCNAG
Sbjct: 235 EMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAG 294
Query: 361 KDDIA 375
K ++A
Sbjct: 295 KGEVA 299
Score = 72.4 bits (176), Expect = 4e-11
Identities = 36/114 (31%), Positives = 61/114 (53%)
Frame = +1
Query: 10 IVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVEEMG 189
+V +L CS A +FF+W+ ++ G+ HT ETYN M I+G ++F + L EM
Sbjct: 687 LVLEILHNCSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKISGREKDFKHMRSLFYEMR 746
Query: 190 KNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALC 351
+ + TW I+I YG+ + +L + +M+ +G P+ YK + +LC
Sbjct: 747 RKGCLITPDTWAIMIMQYGRTGLTEISLKTFTEMKDNGYIPNDSTYKYLLISLC 800
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 167 bits (424), Expect = 6e-40
Identities = 80/125 (64%), Positives = 101/125 (80%)
Frame = +1
Query: 1 DEEIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVE 180
+ EIVE+VLK+C +VP LA+RFFNWVK K+GF HTT+TYNTM+ AGE REF +V+ L+E
Sbjct: 169 EPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLE 228
Query: 181 EMGKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALCNAG 360
EM K S E DI+TWTILI YGKAK+VGKALL++EKMR SG EPD+ Y++ +LC+AG
Sbjct: 229 EMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAG 288
Query: 361 KDDIA 375
K +IA
Sbjct: 289 KGEIA 293
Score = 79.3 bits (194), Expect = 3e-13
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +1
Query: 7 EIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVEEM 186
E+V L+ C A FF WV +NGF TTETYN M ++G ++F + L EM
Sbjct: 663 ELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEM 722
Query: 187 GKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALC 351
+ + + TW I+I YG+ + AL ++ +M+ SG P+ YK + LC
Sbjct: 723 RRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLC 777
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 167 bits (423), Expect = 8e-40
Identities = 79/125 (63%), Positives = 101/125 (80%)
Frame = +1
Query: 1 DEEIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVE 180
+ EIVE+VLK+C +VP LA+RFFNWVK K+GF HTT+TYNTM+ AGE REF +V+ L+E
Sbjct: 169 EPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLE 228
Query: 181 EMGKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALCNAG 360
EM K S E DI+TWTILI YGKAK++GKALL++EKMR SG EPD+ Y++ +LC+AG
Sbjct: 229 EMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAG 288
Query: 361 KDDIA 375
K +IA
Sbjct: 289 KGEIA 293
Score = 79.3 bits (194), Expect = 3e-13
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +1
Query: 7 EIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVEEM 186
E+V L+ C A FF WV +NGF TTETYN M ++G ++F + L EM
Sbjct: 663 ELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEM 722
Query: 187 GKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALC 351
+ + + TW I+I YG+ + AL ++ +M+ SG P+ YK + LC
Sbjct: 723 RRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLC 777
>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297317055|gb|EFH47477.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1029
Score = 158 bits (400), Expect = 4e-37
Identities = 75/125 (60%), Positives = 97/125 (77%)
Frame = +1
Query: 1 DEEIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVE 180
+ EIVE VLK+C +VP LA RFFNWVKLK+GF+H YNTM++IAGE R +V++LV+
Sbjct: 153 EPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARNLDMVDELVK 212
Query: 181 EMGKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALCNAG 360
EM K++ + DIRTWTILI+ YGKAK +GK LL++EKMR SG E D AY +M R+LC AG
Sbjct: 213 EMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLCIAG 272
Query: 361 KDDIA 375
+ D+A
Sbjct: 273 RGDLA 277
Score = 70.5 bits (171), Expect = 1e-10
Identities = 34/115 (29%), Positives = 58/115 (50%)
Frame = +1
Query: 7 EIVERVLKKCSRVPRLAFRFFNWVKLKNGFNHTTETYNTMMNIAGELREFGLVEKLVEEM 186
E+V VL+ RFF+WV +NG+ H +E YN + +AG ++F + L EM
Sbjct: 643 ELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEM 702
Query: 187 GKNSYEMDIRTWTILITHYGKAKMVGKALLMYEKMRVSGIEPDLVAYKLMSRALC 351
+ + TW I+I YG+ + A+ +++M+ G+ P +K + LC
Sbjct: 703 RRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLC 757