BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00043306
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   203   1e-50
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   154   5e-36
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   150   1e-34
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   149   2e-34
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   148   5e-34

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  203 bits (516), Expect = 1e-50
 Identities = 90/111 (81%), Positives = 103/111 (92%)
 Frame = -2

Query: 359 RNKFPKATHRTKGTLDYIHSDCWGPSRVESLGGHRYFVSMIDDFSRMTWVFVMKHKSEVF 180
           RNKFPKA HRTKGTLDYIHSDCWGP RVESLGG R+FVS+IDD+SRMTWV++MKHKSE F
Sbjct: 456 RNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAF 515

Query: 179 KTFKQWKVLLENQTGKKIKRLRTDNGLEFCSSEFDEFCKNDGIARHHTFRD 27
           + FK+WK+L+ENQTGKKIKRLRTDNGLEFC SEFD+FCK++GIARH T R+
Sbjct: 516 QKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRN 566


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  154 bits (390), Expect = 5e-36
 Identities = 66/110 (60%), Positives = 87/110 (79%)
 Frame = -2

Query: 359 RNKFPKATHRTKGTLDYIHSDCWGPSRVESLGGHRYFVSMIDDFSRMTWVFVMKHKSEVF 180
           R KF KA H T+  LDYIHSD WGPSRV S+GG RYF+++IDD+SR  W++ +K+KSE F
Sbjct: 436 RVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETF 495

Query: 179 KTFKQWKVLLENQTGKKIKRLRTDNGLEFCSSEFDEFCKNDGIARHHTFR 30
             FK+WK+L+E QT +K+K+LRTDNGLEF S++F+  C+ +GIARH T R
Sbjct: 496 LKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVR 545


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  150 bits (378), Expect = 1e-34
 Identities = 66/110 (60%), Positives = 81/110 (73%)
 Frame = -2

Query: 359  RNKFPKATHRTKGTLDYIHSDCWGPSRVESLGGHRYFVSMIDDFSRMTWVFVMKHKSEVF 180
            R KF   +H T G L+YIHSD WGPS VES  G RY+V+ IDDFSR  WV+ +K K EVF
Sbjct: 790  RVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVF 849

Query: 179  KTFKQWKVLLENQTGKKIKRLRTDNGLEFCSSEFDEFCKNDGIARHHTFR 30
              FK+WK ++E +TGK +K LRTDNGLEFC+ +FDEFC+ +GI RH T R
Sbjct: 850  GKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVR 899


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  149 bits (376), Expect = 2e-34
 Identities = 65/108 (60%), Positives = 80/108 (74%)
 Frame = -2

Query: 353 KFPKATHRTKGTLDYIHSDCWGPSRVESLGGHRYFVSMIDDFSRMTWVFVMKHKSEVFKT 174
           KF   +H T G L+YIHSD WGPS VES  G RY+V+ IDDFSR  WV+ +K K EVF  
Sbjct: 579 KFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGK 638

Query: 173 FKQWKVLLENQTGKKIKRLRTDNGLEFCSSEFDEFCKNDGIARHHTFR 30
           FK+WK ++E +TGK +K LRTDNGLEFC+ +FDEFC+ +GI RH T R
Sbjct: 639 FKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVR 686


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  148 bits (373), Expect = 5e-34
 Identities = 62/108 (57%), Positives = 81/108 (75%)
 Frame = -2

Query: 359 RNKFPKATHRTKGTLDYIHSDCWGPSRVESLGGHRYFVSMIDDFSRMTWVFVMKHKSEVF 180
           R KF  + HRTKG LDY+H+D WGPSR  SLGG RY +++IDD+SR  W + +KHK + F
Sbjct: 471 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 530

Query: 179 KTFKQWKVLLENQTGKKIKRLRTDNGLEFCSSEFDEFCKNDGIARHHT 36
             FK+WKV++E QT K++K LRTDN  EFCS  FD++C+ +GI RHHT
Sbjct: 531 AAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHT 578