BLASTX nr result
ID: Cnidium21_contig00042992
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00042992
(614 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH67116.1| H0502G05.7 [Oryza sativa Indica Group] 167 1e-39
ref|NP_001057345.1| Os06g0266100 [Oryza sativa Japonica Group] g... 167 1e-39
gb|AAL68644.1|AF458768_1 polyprotein [Oryza sativa Japonica Group] 167 1e-39
gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays] 166 2e-39
emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa Japonica Group] 165 5e-39
>emb|CAH67116.1| H0502G05.7 [Oryza sativa Indica Group]
Length = 642
Score = 167 bits (423), Expect = 1e-39
Identities = 96/205 (46%), Positives = 126/205 (61%), Gaps = 1/205 (0%)
Frame = +1
Query: 1 STLEATPFQVVYGTKPRHMAGQERTHNNISSLEFMLEEKQQQWSVLGELLEAAQVRMKSY 180
S+++ATPF+V+YG P H G I L L+E++ +++ + L AQ +MK +
Sbjct: 351 SSVQATPFEVLYGHSPSHF-GIGSQDCAIPDLAQWLKERRLMQNLVQQHLHRAQQQMKHF 409
Query: 181 ADNKRSEREFVVGEKVYLKLQPYRQVTVAIRKCLKLSAKYFGPYEVLEKIGHVAYKLDLP 360
AD KRS R F VG+ VYLKLQPY Q +VA+R KL+ KYFGPY+V KIG VAY+L LP
Sbjct: 410 ADKKRSFRSFEVGDWVYLKLQPYVQTSVAVRANHKLAFKYFGPYQVTAKIGTVAYQLQLP 469
Query: 361 KTSRVHPVFHVSQLKRAIG-QAKAHRQLPQVTEQGTFDLSPLRKLDTRSVVKDHKVIYQV 537
++ +HPVFHVSQLK AIG QLP T PLR LD R + + + QV
Sbjct: 470 SSTSIHPVFHVSQLKSAIGFTGPVQHQLPASTAPLQV---PLRILDRRLTKRGNSAVAQV 526
Query: 538 LVQWKGCSVDEATWEDEDLLKLNFP 612
L+QW ++ATWED D L+ FP
Sbjct: 527 LIQWSASVPEDATWEDLDDLRSRFP 551
>ref|NP_001057345.1| Os06g0266100 [Oryza sativa Japonica Group]
gi|113595385|dbj|BAF19259.1| Os06g0266100, partial
[Oryza sativa Japonica Group]
Length = 399
Score = 167 bits (423), Expect = 1e-39
Identities = 92/205 (44%), Positives = 127/205 (61%), Gaps = 1/205 (0%)
Frame = +1
Query: 1 STLEATPFQVVYGTKPRHMAGQERTHNNISSLEFMLEEKQQQWSVLGELLEAAQVRMKSY 180
S L +PF+V+YG PR+ G I L+ L+E++ S++ + L AQ MK+
Sbjct: 133 SALNTSPFEVLYGHPPRYF-GIHSEDCAIPELQVWLKERRLMHSLIQQHLNRAQQHMKNM 191
Query: 181 ADNKRSEREFVVGEKVYLKLQPYRQVTVAIRKCLKLSAKYFGPYEVLEKIGHVAYKLDLP 360
AD KRS R F +G+ VY+KLQPY Q +VA R KL+ +YFGP++V++K G VAYKL LP
Sbjct: 192 ADKKRSFRSFELGDWVYIKLQPYVQSSVAARANHKLAFRYFGPFQVIQKFGSVAYKLQLP 251
Query: 361 KTSRVHPVFHVSQLKRAIG-QAKAHRQLPQVTEQGTFDLSPLRKLDTRSVVKDHKVIYQV 537
TS +HPVFHVSQLK A G Q H LP + + P+ LD R + K + + QV
Sbjct: 252 TTSSIHPVFHVSQLKAAKGFQGALHSTLPSSDDAFQY---PIMLLDNRLIKKGNTTVSQV 308
Query: 538 LVQWKGCSVDEATWEDEDLLKLNFP 612
L+QW +V++ATWED + L+ FP
Sbjct: 309 LIQWSDTAVEDATWEDLEDLRARFP 333
>gb|AAL68644.1|AF458768_1 polyprotein [Oryza sativa Japonica Group]
Length = 933
Score = 167 bits (423), Expect = 1e-39
Identities = 99/205 (48%), Positives = 123/205 (60%), Gaps = 1/205 (0%)
Frame = +1
Query: 1 STLEATPFQVVYGTKPRHMAGQERTHNNISSLEFMLEEKQQQWSVLGELLEAAQVRMKSY 180
S L TPF+V+YG P H G IS L+ L E+ +L + L AQ MK+
Sbjct: 672 SALNKTPFEVLYGYPPSHF-GIRADACVISDLDSWLSERHLMTQLLRQHLNRAQQVMKTQ 730
Query: 181 ADNKRSEREFVVGEKVYLKLQPYRQVTVAIRKCLKLSAKYFGPYEVLEKIGHVAYKLDLP 360
AD KRS R F VG+ V+LKLQPY Q +VA R KLS +YFGPY++L K+G VAYKL LP
Sbjct: 731 ADKKRSFRSFQVGDWVFLKLQPYVQSSVAKRANHKLSFRYFGPYQILSKVGSVAYKLQLP 790
Query: 361 KTSRVHPVFHVSQLKRAIG-QAKAHRQLPQVTEQGTFDLSPLRKLDTRSVVKDHKVIYQV 537
S VHPVFHVSQLK + QLP +T+ + P++ LDTR K +KV+ Q+
Sbjct: 791 ADSMVHPVFHVSQLKGTQNFKHSIQSQLPNITDHIQY---PVQILDTRIQKKGNKVVRQI 847
Query: 538 LVQWKGCSVDEATWEDEDLLKLNFP 612
LV W EATWEDE+ LK FP
Sbjct: 848 LVCWSNLPAVEATWEDEEELKQRFP 872
>gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 166 bits (421), Expect = 2e-39
Identities = 97/205 (47%), Positives = 128/205 (62%), Gaps = 1/205 (0%)
Frame = +1
Query: 1 STLEATPFQVVYGTKPRHMAGQERTHNNISSLEFMLEEKQQQWSVLGELLEAAQVRMKSY 180
STL TPF+V+YG PRH T LE L+E++ V+ L AQ RMK
Sbjct: 1334 STLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMTKVIKLHLHRAQDRMKRQ 1393
Query: 181 ADNKRSEREFVVGEKVYLKLQPYRQVTVAIRKCLKLSAKYFGPYEVLEKIGHVAYKLDLP 360
AD +RSER F VG+ VYLKLQPY Q +VA R KLS K+FGP+++ +++G VAY+L LP
Sbjct: 1394 ADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGPFQITDRLGSVAYRLALP 1453
Query: 361 KTSRVHPVFHVSQLKRAIGQ-AKAHRQLPQVTEQGTFDLSPLRKLDTRSVVKDHKVIYQV 537
+S +HP+FHVSQLKR IG+ +A QLPQ + G + P R L R + + ++I QV
Sbjct: 1454 ASSSIHPIFHVSQLKRVIGRDQRASPQLPQ--DVGPIQV-PTRILQRRFIDRGGELIAQV 1510
Query: 538 LVQWKGCSVDEATWEDEDLLKLNFP 612
V W G + D ATWED + L+ FP
Sbjct: 1511 KVVWSGMTEDLATWEDVEALRARFP 1535
>emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa Japonica Group]
Length = 753
Score = 165 bits (418), Expect = 5e-39
Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Frame = +1
Query: 7 LEATPFQVVYGTKPRHMAGQERTHNNISSLEFMLEEKQQQWSVLGELLEAAQVRMKSYAD 186
++ATPF+V+YG P H G I L L+E++ +++ + L AQ +MK +AD
Sbjct: 241 VQATPFEVLYGHSPSHF-GIGSQDCAIPDLAQWLKERRLMQNLVQQHLHRAQQQMKHFAD 299
Query: 187 NKRSEREFVVGEKVYLKLQPYRQVTVAIRKCLKLSAKYFGPYEVLEKIGHVAYKLDLPKT 366
KRS R F VG+ VYLKLQPY Q +VA+R KL+ KYFGPY+V KIG VAY+L LP +
Sbjct: 300 KKRSFRSFEVGDWVYLKLQPYVQTSVAVRANHKLAFKYFGPYQVTAKIGTVAYQLQLPSS 359
Query: 367 SRVHPVFHVSQLKRAIG-QAKAHRQLPQVTEQGTFDLSPLRKLDTRSVVKDHKVIYQVLV 543
+ +HPVFHVSQLK AIG QLP T PLR LD R + + + QVL+
Sbjct: 360 TSIHPVFHVSQLKSAIGFTGPVQHQLPASTAPLQV---PLRILDRRLTKRGNSAVAQVLI 416
Query: 544 QWKGCSVDEATWEDEDLLKLNFP 612
QW ++ATWED D L+ FP
Sbjct: 417 QWSASVPEDATWEDLDDLRSRFP 439