BLASTX nr result

ID: Cnidium21_contig00042609 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042609
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267274.1| PREDICTED: translocase of chloroplast 159, c...   135   5e-30
ref|XP_002332265.1| predicted protein [Populus trichocarpa] gi|2...   133   2e-29
ref|XP_004152365.1| PREDICTED: translocase of chloroplast 159, c...   132   4e-29
ref|XP_004156890.1| PREDICTED: translocase of chloroplast 159, c...   130   9e-29
ref|XP_002516922.1| GTP binding protein, putative [Ricinus commu...   128   6e-28

>ref|XP_002267274.1| PREDICTED: translocase of chloroplast 159, chloroplastic-like [Vitis
            vinifera]
          Length = 1465

 Score =  135 bits (339), Expect = 5e-30
 Identities = 71/107 (66%), Positives = 85/107 (79%)
 Frame = +3

Query: 3    LVQRLGMSDESSVVAKVLQRLIQVTEVQIGHPFVPDTAKNTALQLEKDGKEDLDCSLNIL 182
            LVQRLG S E S+V +VL RL  +   Q G  F  DTAK  A+QLE +GK+DL+ SLNIL
Sbjct: 765  LVQRLGHSPEDSIVGQVLYRLALLVGRQTGEEFSLDTAKRRAMQLEAEGKDDLNFSLNIL 824

Query: 183  VLGKSGVGKTATINAIFGEKKARVDAFQPATTTVKEIIGVADGVKIR 323
            VLGKSGVGK+ATIN+IFGE+KA ++AF+PATTTV+EIIG  DGVKIR
Sbjct: 825  VLGKSGVGKSATINSIFGEQKALINAFEPATTTVREIIGTIDGVKIR 871


>ref|XP_002332265.1| predicted protein [Populus trichocarpa] gi|222832030|gb|EEE70507.1|
           predicted protein [Populus trichocarpa]
          Length = 861

 Score =  133 bits (334), Expect = 2e-29
 Identities = 64/107 (59%), Positives = 84/107 (78%)
 Frame = +3

Query: 3   LVQRLGMSDESSVVAKVLQRLIQVTEVQIGHPFVPDTAKNTALQLEKDGKEDLDCSLNIL 182
           LVQRLG S E S+VA+VL RL+  T   +   F  + A+  A+QLE +GK+DLD SL+IL
Sbjct: 163 LVQRLGQSPEDSIVAQVLHRLVVATRAHVNQEFSLENAEKMAMQLEAEGKDDLDFSLSIL 222

Query: 183 VLGKSGVGKTATINAIFGEKKARVDAFQPATTTVKEIIGVADGVKIR 323
           VLGK+GVGK+ATIN+IFGEKK  ++AF+PATT +KE++G+ DGVKIR
Sbjct: 223 VLGKTGVGKSATINSIFGEKKVEINAFEPATTMLKEVVGIVDGVKIR 269


>ref|XP_004152365.1| PREDICTED: translocase of chloroplast 159, chloroplastic-like
            [Cucumis sativus]
          Length = 1528

 Score =  132 bits (331), Expect = 4e-29
 Identities = 71/107 (66%), Positives = 82/107 (76%)
 Frame = +3

Query: 3    LVQRLGMSDESSVVAKVLQRLIQVTEVQIGHPFVPDTAKNTALQLEKDGKEDLDCSLNIL 182
            LVQRLG+S + S+VA+VL R   V     G  F  D AKNTA+QLE +GKEDLD SLNIL
Sbjct: 829  LVQRLGVSPDDSLVAQVLYRFGLVAGRSTGQLFSFDNAKNTAIQLEAEGKEDLDFSLNIL 888

Query: 183  VLGKSGVGKTATINAIFGEKKARVDAFQPATTTVKEIIGVADGVKIR 323
            VLGKSGVGK+ATIN+IFGE K  ++AF P TTTVKEIIG  +GVKIR
Sbjct: 889  VLGKSGVGKSATINSIFGENKTPINAFGPGTTTVKEIIGTVEGVKIR 935


>ref|XP_004156890.1| PREDICTED: translocase of chloroplast 159, chloroplastic-like
            [Cucumis sativus]
          Length = 1528

 Score =  130 bits (328), Expect = 9e-29
 Identities = 71/107 (66%), Positives = 81/107 (75%)
 Frame = +3

Query: 3    LVQRLGMSDESSVVAKVLQRLIQVTEVQIGHPFVPDTAKNTALQLEKDGKEDLDCSLNIL 182
            LVQRLG+S + S+VA VL R   V     G  F  D AKNTA+QLE +GKEDLD SLNIL
Sbjct: 829  LVQRLGVSPDDSLVAHVLYRFGLVAGRSTGQLFSFDNAKNTAIQLEAEGKEDLDFSLNIL 888

Query: 183  VLGKSGVGKTATINAIFGEKKARVDAFQPATTTVKEIIGVADGVKIR 323
            VLGKSGVGK+ATIN+IFGE K  ++AF P TTTVKEIIG  +GVKIR
Sbjct: 889  VLGKSGVGKSATINSIFGEDKTPINAFGPGTTTVKEIIGTVEGVKIR 935


>ref|XP_002516922.1| GTP binding protein, putative [Ricinus communis]
            gi|223544010|gb|EEF45536.1| GTP binding protein, putative
            [Ricinus communis]
          Length = 1381

 Score =  128 bits (321), Expect = 6e-28
 Identities = 63/107 (58%), Positives = 79/107 (73%)
 Frame = +3

Query: 3    LVQRLGMSDESSVVAKVLQRLIQVTEVQIGHPFVPDTAKNTALQLEKDGKEDLDCSLNIL 182
            LV RLG+S E S V +VL RL+    + + H F  + AK  A+QLE +GK+DLD  LNIL
Sbjct: 696  LVHRLGLSPEDSTVVQVLHRLVLAAGLHVRHKFCNEFAKRMAMQLEAEGKDDLDFCLNIL 755

Query: 183  VLGKSGVGKTATINAIFGEKKARVDAFQPATTTVKEIIGVADGVKIR 323
            V+GK+GVGK+AT+N+IFGEKK  +DAF PATT VKEI G  DGV+IR
Sbjct: 756  VIGKTGVGKSATVNSIFGEKKVMIDAFDPATTKVKEIFGTIDGVRIR 802


Top